Ggra10270.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra10270.t1
Unique Name	Ggra10270.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	359

Homology

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BLAST of Ggra10270.t1 vs. uniprot
Match: A0A2V3IET1 (BPI1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IET1_9FLOR)

HSP 1 Score: 412 bits (1060), Expect = 5.170e-141
Identity = 235/354 (66.38%), Postives = 274/354 (77.40%), Query Frame = 0

Query:   11 PARFTLHDDEELGHFVELDESADYLATSGPASSADPSATATTLPRRNAPSEAASSAPGPESHPA-----LLRKLVARYPSLDADALKSLLTACDNDIDAASAIIDADSSVASVDDATLAASLQARENRAAARRHRRNGASFALDQAQMDNLVCTLRDIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALSLPKVTVRPALDRKYVFVNVLNAQLELHLGQWRYESQGIVPLQDQGQARLSLQGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYGAGANWAYNAVAVVLKPLVLSYAKEAIADTVTRSLTLYLREWSCSRPLDTSPSSAAT-STPQSPVTAAE 358
            PARFTLHD    G F ELDESADY  T+  A    P      LP  +AP+ +ASS P P  HPA     LL KLV RYPSLD D L +LL +CDNDIDAAS +++ D++ +S DDA LAASLQ RENR A+ RHRRN A F L   QMD+LV TL+ IVVPAL AHFEELVLPDT DQTASI YSL+H+QVTALSLP VTVRPA DRK VF+ VLNAQLELH+G W+YES+GIVP+ D GQARLS+QGL ILLKL+PRWS DG A++ VS+C+VTVDGV RFKTYGA A+WAY+A+A+VLKPLVLSY KEAIAD+V+R+L LYLR+WSCSR LD SP S A+ S  Q+ +TAAE
Sbjct:    4 PARFTLHD----GDFAELDESADYETTASAAPG--PVVARPALP--SAPNLSASS-PQPVQHPAQPHQSLLSKLVRRYPSLDKDVLTALLVSCDNDIDAASTLVEGDTNASSADDALLAASLQERENRRASVRHRRNNAVFPLQPFQMDSLVSTLKHIVVPALHAHFEELVLPDTTDQTASILYSLQHVQVTALSLPNVTVRPAPDRKSVFLTVLNAQLELHVGSWKYESRGIVPVNDAGQARLSVQGLTILLKLEPRWSHDGTARINVSECNVTVDGVTRFKTYGAKADWAYSAIALVLKPLVLSYVKEAIADSVSRALALYLRQWSCSRTLDASPGSTASPSATQAQLTAAE 348

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BLAST of Ggra10270.t1 vs. uniprot
Match: R7QPP0 (BPI1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP0_CHOCR)

HSP 1 Score: 224 bits (572), Expect = 3.850e-69
Identity = 118/211 (55.92%), Postives = 154/211 (72.99%), Query Frame = 0

Query:  156 LVCTLRDIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALSLP--KVTVRPALDRKYVFVNVLNAQLELHLGQWRYESQGIVPLQDQGQARLSLQGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYGAGANWAYNAVAVVLKPLVLSYAKEAIADTVTRSLTLYLREWSCSRPLDTSPSSAAT------STPQSPVTAAE 358
            +V TLR+IVVPAL+AHFEELVLPDT D +  + Y L+  QV+ LSLP   + V+P  D K + V+V+N  LEL +G+W YES+G VP++D G AR+S+ G++I + L+PRWS  GG KVV++DC VT+DG VRF T GA A+WAY A+ VVLKPLV+SY KEAIADTV+++L  +L +W+ SR LD  P+ A        STPQS VTAAE
Sbjct:    1 MVDTLREIVVPALRAHFEELVLPDTKDTSVGVEYELQRFQVSNLSLPPENIHVKPTTDGKLIRVSVVNTFLELEVGRWSYESKGFVPVKDAGTARVSVNGMSISVMLEPRWSHGGGTKVVIADCVVTIDGKVRFATEGAVADWAYKAITVVLKPLVVSYIKEAIADTVSKTLAFHLSQWAFSRSLDDQPARAQRTEPQRPSTPQSTVTAAE 211

The following BLAST results are available for this feature:

BLAST of Ggra10270.t1 vs. uniprot

BLAST of Ggra10270.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IET1	5.170e-141	66.38	BPI1 domain-containing protein n=1 Tax=Gracilariop...	[more]
R7QPP0	3.850e-69	55.92	BPI1 domain-containing protein n=1 Tax=Chondrus cr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017942	Lipid-binding serum glycoprotein, N-terminal	PFAM	PF01273	LBP_BPI_CETP	coord: 163..321 e-value: 7.1E-10 score: 38.7
None	No IPR available	GENE3D	3.15.10.10		coord: 159..330 e-value: 3.9E-21 score: 77.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..71
None	No IPR available	CDD	cd14279	CUE	coord: 74..109 e-value: 0.00542541 score: 32.4402
IPR017943	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	SUPERFAMILY	55394	Bactericidal permeability-increasing protein, BPI	coord: 161..328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:300690..301766 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10270.t1	Ggra10270.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000016_pilon 300690..301766 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra10270.t1 ID=Ggra10270.t1|Name=Ggra10270.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MSRQVQFKTPPARFTLHDDEELGHFVELDESADYLATSGPASSADPSATA
TTLPRRNAPSEAASSAPGPESHPALLRKLVARYPSLDADALKSLLTACDN
DIDAASAIIDADSSVASVDDATLAASLQARENRAAARRHRRNGASFALDQ
AQMDNLVCTLRDIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALS
LPKVTVRPALDRKYVFVNVLNAQLELHLGQWRYESQGIVPLQDQGQARLS
LQGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYGAGANWAYNA
VAVVLKPLVLSYAKEAIADTVTRSLTLYLREWSCSRPLDTSPSSAATSTP
QSPVTAAE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017942	Lipid-bd_serum_glycop_N
IPR017943	Bactericidal_perm-incr_a/b_dom