Ggra10270.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10270.t1
Unique NameGgra10270.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:300690..301766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10270Ggra10270Gracilaria gracilis GNS1m malegenetig00000016_pilon 300690..301766 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10270.t1.stop1Ggra10270.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 300690..300692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10270.t1.CDS1Ggra10270.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 300690..301766 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10270.t1.exon1Ggra10270.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 300690..301766 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10270.t1.start1Ggra10270.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 301764..301766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10270.t1Ggra10270.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 300690..301766 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10270.t1 ID=Ggra10270.t1|Name=Ggra10270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MSRQVQFKTPPARFTLHDDEELGHFVELDESADYLATSGPASSADPSATA
TTLPRRNAPSEAASSAPGPESHPALLRKLVARYPSLDADALKSLLTACDN
DIDAASAIIDADSSVASVDDATLAASLQARENRAAARRHRRNGASFALDQ
AQMDNLVCTLRDIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALS
LPKVTVRPALDRKYVFVNVLNAQLELHLGQWRYESQGIVPLQDQGQARLS
LQGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYGAGANWAYNA
VAVVLKPLVLSYAKEAIADTVTRSLTLYLREWSCSRPLDTSPSSAATSTP
QSPVTAAE*
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spliced messenger RNA

>Ggra10270.t1 ID=Ggra10270.t1|Name=Ggra10270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000016_pilon:300690..301766- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGTCAAGTTCAGTTCAAGACACCGCCGGCGCGCTTCACCTTGCA
TGATGACGAAGAGCTTGGGCACTTCGTTGAGCTGGATGAGTCGGCTGATT
ACCTCGCCACCTCCGGCCCGGCCTCATCGGCAGACCCGTCCGCAACTGCA
ACCACCCTGCCCCGACGTAATGCACCCTCGGAAGCTGCGTCGAGCGCTCC
GGGCCCTGAATCACATCCCGCTTTGCTGAGGAAGCTTGTGGCCAGATATC
CCTCGCTGGATGCTGATGCGCTCAAGTCGCTGTTAACCGCTTGTGATAAC
GACATTGATGCGGCGAGCGCGATAATTGACGCCGACAGTTCCGTGGCTTC
TGTTGACGATGCTACGCTTGCTGCTTCCCTGCAGGCGCGCGAGAATCGTG
CGGCTGCTAGACGTCATCGAAGGAACGGCGCTTCGTTTGCACTAGATCAA
GCGCAAATGGATAATCTTGTATGTACGCTTAGGGATATTGTCGTCCCGGC
TCTACAGGCTCACTTTGAGGAGTTGGTGCTCCCGGACACAAACGACCAGA
CCGCTTCTATTGCATACAGCCTAAAACATTTGCAGGTCACTGCCCTTTCT
CTCCCAAAAGTTACAGTTCGTCCCGCTCTTGATCGAAAGTATGTTTTCGT
TAACGTTTTAAACGCCCAGCTTGAGTTGCATCTGGGCCAATGGCGGTACG
AGAGCCAGGGAATTGTTCCTCTTCAGGATCAAGGCCAAGCGCGCTTATCA
CTCCAGGGGCTCAACATCTTGCTTAAATTACAACCCCGTTGGTCTTTCGA
CGGCGGAGCCAAAGTGGTTGTCAGCGACTGCCACGTCACTGTTGATGGCG
TAGTACGCTTCAAGACGTATGGTGCGGGCGCCAACTGGGCTTATAACGCT
GTCGCCGTCGTTCTTAAACCACTGGTTTTATCTTATGCCAAGGAAGCTAT
TGCGGATACTGTTACACGCTCGCTCACTTTGTATCTGAGGGAATGGTCGT
GCTCTAGACCTCTAGATACCTCGCCCTCGTCCGCTGCTACTAGTACGCCA
CAATCACCGGTCACTGCTGCCGAATGA
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protein sequence of Ggra10270.t1

>Ggra10270.t1 ID=Ggra10270.t1|Name=Ggra10270.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MSRQVQFKTPPARFTLHDDEELGHFVELDESADYLATSGPASSADPSATA
TTLPRRNAPSEAASSAPGPESHPALLRKLVARYPSLDADALKSLLTACDN
DIDAASAIIDADSSVASVDDATLAASLQARENRAAARRHRRNGASFALDQ
AQMDNLVCTLRDIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALS
LPKVTVRPALDRKYVFVNVLNAQLELHLGQWRYESQGIVPLQDQGQARLS
LQGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYGAGANWAYNA
VAVVLKPLVLSYAKEAIADTVTRSLTLYLREWSCSRPLDTSPSSAATSTP
QSPVTAAE*
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mRNA from alignment at tig00000016_pilon:300690..301766-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10270.t1 ID=Ggra10270.t1|Name=Ggra10270.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000016_pilon:300690..301766- (Gracilaria gracilis GNS1m male)
ATGTCGCGTCAAGTTCAGTTCAAGACACCGCCGGCGCGCTTCACCTTGCA
TGATGACGAAGAGCTTGGGCACTTCGTTGAGCTGGATGAGTCGGCTGATT
ACCTCGCCACCTCCGGCCCGGCCTCATCGGCAGACCCGTCCGCAACTGCA
ACCACCCTGCCCCGACGTAATGCACCCTCGGAAGCTGCGTCGAGCGCTCC
GGGCCCTGAATCACATCCCGCTTTGCTGAGGAAGCTTGTGGCCAGATATC
CCTCGCTGGATGCTGATGCGCTCAAGTCGCTGTTAACCGCTTGTGATAAC
GACATTGATGCGGCGAGCGCGATAATTGACGCCGACAGTTCCGTGGCTTC
TGTTGACGATGCTACGCTTGCTGCTTCCCTGCAGGCGCGCGAGAATCGTG
CGGCTGCTAGACGTCATCGAAGGAACGGCGCTTCGTTTGCACTAGATCAA
GCGCAAATGGATAATCTTGTATGTACGCTTAGGGATATTGTCGTCCCGGC
TCTACAGGCTCACTTTGAGGAGTTGGTGCTCCCGGACACAAACGACCAGA
CCGCTTCTATTGCATACAGCCTAAAACATTTGCAGGTCACTGCCCTTTCT
CTCCCAAAAGTTACAGTTCGTCCCGCTCTTGATCGAAAGTATGTTTTCGT
TAACGTTTTAAACGCCCAGCTTGAGTTGCATCTGGGCCAATGGCGGTACG
AGAGCCAGGGAATTGTTCCTCTTCAGGATCAAGGCCAAGCGCGCTTATCA
CTCCAGGGGCTCAACATCTTGCTTAAATTACAACCCCGTTGGTCTTTCGA
CGGCGGAGCCAAAGTGGTTGTCAGCGACTGCCACGTCACTGTTGATGGCG
TAGTACGCTTCAAGACGTATGGTGCGGGCGCCAACTGGGCTTATAACGCT
GTCGCCGTCGTTCTTAAACCACTGGTTTTATCTTATGCCAAGGAAGCTAT
TGCGGATACTGTTACACGCTCGCTCACTTTGTATCTGAGGGAATGGTCGT
GCTCTAGACCTCTAGATACCTCGCCCTCGTCCGCTGCTACTAGTACGCCA
CAATCACCGGTCACTGCTGCCGAATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:300690..301766-

>Ggra10270.t1 ID=Ggra10270.t1|Name=Ggra10270.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000016_pilon:300690..301766- (Gracilaria gracilis GNS1m male)
ATGTCGCGTCAAGTTCAGTTCAAGACACCGCCGGCGCGCTTCACCTTGCA
TGATGACGAAGAGCTTGGGCACTTCGTTGAGCTGGATGAGTCGGCTGATT
ACCTCGCCACCTCCGGCCCGGCCTCATCGGCAGACCCGTCCGCAACTGCA
ACCACCCTGCCCCGACGTAATGCACCCTCGGAAGCTGCGTCGAGCGCTCC
GGGCCCTGAATCACATCCCGCTTTGCTGAGGAAGCTTGTGGCCAGATATC
CCTCGCTGGATGCTGATGCGCTCAAGTCGCTGTTAACCGCTTGTGATAAC
GACATTGATGCGGCGAGCGCGATAATTGACGCCGACAGTTCCGTGGCTTC
TGTTGACGATGCTACGCTTGCTGCTTCCCTGCAGGCGCGCGAGAATCGTG
CGGCTGCTAGACGTCATCGAAGGAACGGCGCTTCGTTTGCACTAGATCAA
GCGCAAATGGATAATCTTGTATGTACGCTTAGGGATATTGTCGTCCCGGC
TCTACAGGCTCACTTTGAGGAGTTGGTGCTCCCGGACACAAACGACCAGA
CCGCTTCTATTGCATACAGCCTAAAACATTTGCAGGTCACTGCCCTTTCT
CTCCCAAAAGTTACAGTTCGTCCCGCTCTTGATCGAAAGTATGTTTTCGT
TAACGTTTTAAACGCCCAGCTTGAGTTGCATCTGGGCCAATGGCGGTACG
AGAGCCAGGGAATTGTTCCTCTTCAGGATCAAGGCCAAGCGCGCTTATCA
CTCCAGGGGCTCAACATCTTGCTTAAATTACAACCCCGTTGGTCTTTCGA
CGGCGGAGCCAAAGTGGTTGTCAGCGACTGCCACGTCACTGTTGATGGCG
TAGTACGCTTCAAGACGTATGGTGCGGGCGCCAACTGGGCTTATAACGCT
GTCGCCGTCGTTCTTAAACCACTGGTTTTATCTTATGCCAAGGAAGCTAT
TGCGGATACTGTTACACGCTCGCTCACTTTGTATCTGAGGGAATGGTCGT
GCTCTAGACCTCTAGATACCTCGCCCTCGTCCGCTGCTACTAGTACGCCA
CAATCACCGGTCACTGCTGCCGAATGA
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