Ggra3686.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3686.t1
Unique NameGgra3686.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1082829..1083734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3686Ggra3686Gracilaria gracilis GNS1m malegenetig00000850_pilon 1082829..1083734 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3686.t1.stop1Ggra3686.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1082829..1082831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3686.t1.CDS1Ggra3686.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1082829..1083734 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3686.t1.exon1Ggra3686.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1082829..1083734 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3686.t1.start1Ggra3686.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1083732..1083734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3686.t1Ggra3686.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1082829..1083734 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3686.t1 ID=Ggra3686.t1|Name=Ggra3686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=302bp
MESNHPLLHSTLPDAPAAHPAESANFPFHNSQNIGQIWTELASITVSAFT
PQLISRLRTFISQNPCFELDNHLQMLGAIVVRHVTLCLSDPDRPCNSLPR
KHSQPSLSRPQVRAKRRSYRDLAYHAVRINRIVPQSEPLQVEPTSSSCSS
STSNMPRRLSIQKASSLLDVAKKRPSTTIRSCQTPNAAKENDKIVLNQPA
NPSSAPPFNYSRSVALREESLNSRSQNRTQAFPRANATTFIESASMRQVN
SPTSRHKVVAQPQNLSEYANRFRNDSRTTAPISRLVQQRKRRAEKNRHNL
K*
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spliced messenger RNA

>Ggra3686.t1 ID=Ggra3686.t1|Name=Ggra3686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000850_pilon:1082829..1083734- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCAATCACCCGCTTTTACACTCCACATTACCCGACGCACCCGC
CGCTCATCCTGCCGAATCCGCCAATTTCCCCTTTCACAACTCGCAGAACA
TCGGTCAAATCTGGACCGAGCTCGCCAGTATAACTGTGTCTGCCTTCACG
CCGCAGCTCATCTCCCGTCTTCGCACTTTCATCTCGCAAAACCCGTGCTT
CGAGCTGGACAATCATCTCCAAATGCTGGGTGCCATCGTCGTGCGTCACG
TCACCCTATGTCTGTCCGACCCCGATCGACCGTGCAATTCGCTGCCTCGC
AAGCACTCGCAGCCGTCTCTATCACGCCCTCAAGTGCGCGCGAAGCGACG
CAGTTACCGAGATCTTGCGTATCATGCTGTTCGTATCAATCGCATCGTGC
CACAGTCCGAACCTCTGCAGGTGGAGCCCACGTCGTCGTCGTGTTCGTCG
TCAACCTCCAATATGCCGCGCCGACTGTCCATTCAAAAAGCAAGCAGTCT
ATTAGACGTTGCCAAAAAGCGCCCGTCAACCACCATTCGCAGCTGTCAAA
CACCAAACGCCGCCAAAGAGAACGACAAAATTGTTCTCAACCAACCAGCG
AATCCGTCGTCCGCACCACCCTTCAACTACTCTCGCTCGGTTGCACTACG
CGAAGAATCCCTCAATTCTCGCTCCCAAAATCGAACACAAGCCTTCCCGA
GGGCCAATGCCACCACTTTCATCGAAAGTGCTTCCATGCGTCAGGTCAAC
TCTCCAACGTCTCGTCACAAAGTGGTCGCACAGCCCCAGAATCTCTCCGA
GTATGCCAATCGGTTCCGGAACGATTCCAGGACTACAGCACCGATAAGTC
GGCTGGTTCAGCAGCGGAAACGACGAGCTGAGAAGAATAGGCATAATCTC
AAGTAG
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protein sequence of Ggra3686.t1

>Ggra3686.t1 ID=Ggra3686.t1|Name=Ggra3686.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=302bp
MESNHPLLHSTLPDAPAAHPAESANFPFHNSQNIGQIWTELASITVSAFT
PQLISRLRTFISQNPCFELDNHLQMLGAIVVRHVTLCLSDPDRPCNSLPR
KHSQPSLSRPQVRAKRRSYRDLAYHAVRINRIVPQSEPLQVEPTSSSCSS
STSNMPRRLSIQKASSLLDVAKKRPSTTIRSCQTPNAAKENDKIVLNQPA
NPSSAPPFNYSRSVALREESLNSRSQNRTQAFPRANATTFIESASMRQVN
SPTSRHKVVAQPQNLSEYANRFRNDSRTTAPISRLVQQRKRRAEKNRHNL
K*
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mRNA from alignment at tig00000850_pilon:1082829..1083734-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3686.t1 ID=Ggra3686.t1|Name=Ggra3686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000850_pilon:1082829..1083734- (Gracilaria gracilis GNS1m male)
ATGGAGTCCAATCACCCGCTTTTACACTCCACATTACCCGACGCACCCGC
CGCTCATCCTGCCGAATCCGCCAATTTCCCCTTTCACAACTCGCAGAACA
TCGGTCAAATCTGGACCGAGCTCGCCAGTATAACTGTGTCTGCCTTCACG
CCGCAGCTCATCTCCCGTCTTCGCACTTTCATCTCGCAAAACCCGTGCTT
CGAGCTGGACAATCATCTCCAAATGCTGGGTGCCATCGTCGTGCGTCACG
TCACCCTATGTCTGTCCGACCCCGATCGACCGTGCAATTCGCTGCCTCGC
AAGCACTCGCAGCCGTCTCTATCACGCCCTCAAGTGCGCGCGAAGCGACG
CAGTTACCGAGATCTTGCGTATCATGCTGTTCGTATCAATCGCATCGTGC
CACAGTCCGAACCTCTGCAGGTGGAGCCCACGTCGTCGTCGTGTTCGTCG
TCAACCTCCAATATGCCGCGCCGACTGTCCATTCAAAAAGCAAGCAGTCT
ATTAGACGTTGCCAAAAAGCGCCCGTCAACCACCATTCGCAGCTGTCAAA
CACCAAACGCCGCCAAAGAGAACGACAAAATTGTTCTCAACCAACCAGCG
AATCCGTCGTCCGCACCACCCTTCAACTACTCTCGCTCGGTTGCACTACG
CGAAGAATCCCTCAATTCTCGCTCCCAAAATCGAACACAAGCCTTCCCGA
GGGCCAATGCCACCACTTTCATCGAAAGTGCTTCCATGCGTCAGGTCAAC
TCTCCAACGTCTCGTCACAAAGTGGTCGCACAGCCCCAGAATCTCTCCGA
GTATGCCAATCGGTTCCGGAACGATTCCAGGACTACAGCACCGATAAGTC
GGCTGGTTCAGCAGCGGAAACGACGAGCTGAGAAGAATAGGCATAATCTC
AAGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1082829..1083734-

>Ggra3686.t1 ID=Ggra3686.t1|Name=Ggra3686.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00000850_pilon:1082829..1083734- (Gracilaria gracilis GNS1m male)
ATGGAGTCCAATCACCCGCTTTTACACTCCACATTACCCGACGCACCCGC
CGCTCATCCTGCCGAATCCGCCAATTTCCCCTTTCACAACTCGCAGAACA
TCGGTCAAATCTGGACCGAGCTCGCCAGTATAACTGTGTCTGCCTTCACG
CCGCAGCTCATCTCCCGTCTTCGCACTTTCATCTCGCAAAACCCGTGCTT
CGAGCTGGACAATCATCTCCAAATGCTGGGTGCCATCGTCGTGCGTCACG
TCACCCTATGTCTGTCCGACCCCGATCGACCGTGCAATTCGCTGCCTCGC
AAGCACTCGCAGCCGTCTCTATCACGCCCTCAAGTGCGCGCGAAGCGACG
CAGTTACCGAGATCTTGCGTATCATGCTGTTCGTATCAATCGCATCGTGC
CACAGTCCGAACCTCTGCAGGTGGAGCCCACGTCGTCGTCGTGTTCGTCG
TCAACCTCCAATATGCCGCGCCGACTGTCCATTCAAAAAGCAAGCAGTCT
ATTAGACGTTGCCAAAAAGCGCCCGTCAACCACCATTCGCAGCTGTCAAA
CACCAAACGCCGCCAAAGAGAACGACAAAATTGTTCTCAACCAACCAGCG
AATCCGTCGTCCGCACCACCCTTCAACTACTCTCGCTCGGTTGCACTACG
CGAAGAATCCCTCAATTCTCGCTCCCAAAATCGAACACAAGCCTTCCCGA
GGGCCAATGCCACCACTTTCATCGAAAGTGCTTCCATGCGTCAGGTCAAC
TCTCCAACGTCTCGTCACAAAGTGGTCGCACAGCCCCAGAATCTCTCCGA
GTATGCCAATCGGTTCCGGAACGATTCCAGGACTACAGCACCGATAAGTC
GGCTGGTTCAGCAGCGGAAACGACGAGCTGAGAAGAATAGGCATAATCTC
AAGTAG
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