Ggra3795.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3795.t1
Unique NameGgra3795.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1882539..1883103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3795Ggra3795Gracilaria gracilis GNS1m malegenetig00000850_pilon 1882018..1883103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3795.t1Ggra3795.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1882539..1883103 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3795.t1.stop1Ggra3795.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1882539..1882541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3795.t1.CDS1Ggra3795.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1882539..1882633 -
Ggra3795.t1.CDS2Ggra3795.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1882731..1883103 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3795.t1.exon1Ggra3795.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1882539..1882633 -
Ggra3795.t1.exon2Ggra3795.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1882731..1883103 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3795.t1.intron1Ggra3795.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1882634..1882730 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3795.t1.start1Ggra3795.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1883101..1883103 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3795.t1 ID=Ggra3795.t1|Name=Ggra3795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=156bp
MECALNPMADQNNPCPNGEVPVENVTLVHFRPVEFDLAINLRGYPLDVIL
LIDASSPSSRINAIKPELVSLLRRLDGEAKVSVAIYGSEQEFDSSGYSVL
ASASDDVNRAIQALDRIPQKADGPQNRNAQSEWIGSRQQGICSVTTVEWW
YCREV*
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spliced messenger RNA

>Ggra3795.t1 ID=Ggra3795.t1|Name=Ggra3795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000850_pilon:1882539..1883103- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATGCGCATTGAATCCAATGGCTGATCAGAACAATCCCTGTCCAAA
TGGTGAAGTTCCTGTGGAAAATGTTACACTCGTACATTTTCGCCCAGTTG
AATTCGATTTGGCAATAAATCTGCGTGGTTATCCTCTTGACGTTATCTTG
CTGATCGACGCCAGTTCTCCGAGCTCTCGGATTAATGCCATTAAGCCGGA
ATTGGTTTCATTACTCAGAAGATTAGACGGAGAAGCGAAGGTTAGTGTTG
CAATCTATGGATCGGAGCAAGAGTTTGACTCATCTGGTTATTCAGTTCTT
GCCTCTGCCTCTGATGATGTGAATCGTGCAATTCAAGCACTTGACCGCAT
TCCTCAAAAGGCTGATGGACCCCAGAACCGGAATGCGCAGTCGGAATGGA
TCGGGTCCAGACAGCAGGGGATATGTTCAGTTACTACAGTGGAATGGTGG
TATTGCCGGGAAGTCTAG
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protein sequence of Ggra3795.t1

>Ggra3795.t1 ID=Ggra3795.t1|Name=Ggra3795.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=156bp
MECALNPMADQNNPCPNGEVPVENVTLVHFRPVEFDLAINLRGYPLDVIL
LIDASSPSSRINAIKPELVSLLRRLDGEAKVSVAIYGSEQEFDSSGYSVL
ASASDDVNRAIQALDRIPQKADGPQNRNAQSEWIGSRQQGICSVTTVEWW
YCREV*
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mRNA from alignment at tig00000850_pilon:1882539..1883103-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3795.t1 ID=Ggra3795.t1|Name=Ggra3795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=565bp|location=Sequence derived from alignment at tig00000850_pilon:1882539..1883103- (Gracilaria gracilis GNS1m male)
ATGGAATGCGCATTGAATCCAATGGCTGATCAGAACAATCCCTGTCCAAA
TGGTGAAGTTCCTGTGGAAAATGTTACACTCGTACATTTTCGCCCAGTTG
AATTCGATTTGGCAATAAATCTGCGTGGTTATCCTCTTGACGTTATCTTG
CTGATCGACGCCAGTTCTCCGAGCTCTCGGATTAATGCCATTAAGCCGGA
ATTGGTTTCATTACTCAGAAGATTAGACGGAGAAGCGAAGGTTAGTGTTG
CAATCTATGGATCGGAGCAAGAGTTTGACTCATCTGGTTATTCAGTTCTT
GCCTCTGCCTCTGATGATGTGAATCGTGCAATTCAAGCACTTGACCGCAT
TCCTCAAAAGGCTGATGGACCCCGTACGACGTTAACCGCTCTGCGTTCTT
TGAAAAGTGGTGGGCTTAATCTAGGTGGGTTCAAAGAGGTCGTTCTCCTT
ATCGGTGATACCCCTGGAAGAGAACCGGAATGCGCAGTCGGAATGGATCG
GGTCCAGACAGCAGGGGATATGTTCAGTTACTACAGTGGAATGGTGGTAT
TGCCGGGAAGTCTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1882539..1883103-

>Ggra3795.t1 ID=Ggra3795.t1|Name=Ggra3795.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=468bp|location=Sequence derived from alignment at tig00000850_pilon:1882539..1883103- (Gracilaria gracilis GNS1m male)
ATGGAATGCGCATTGAATCCAATGGCTGATCAGAACAATCCCTGTCCAAA
TGGTGAAGTTCCTGTGGAAAATGTTACACTCGTACATTTTCGCCCAGTTG
AATTCGATTTGGCAATAAATCTGCGTGGTTATCCTCTTGACGTTATCTTG
CTGATCGACGCCAGTTCTCCGAGCTCTCGGATTAATGCCATTAAGCCGGA
ATTGGTTTCATTACTCAGAAGATTAGACGGAGAAGCGAAGGTTAGTGTTG
CAATCTATGGATCGGAGCAAGAGTTTGACTCATCTGGTTATTCAGTTCTT
GCCTCTGCCTCTGATGATGTGAATCGTGCAATTCAAGCACTTGACCGCAT
TCCTCAAAAGGCTGATGGACCCCAGAACCGGAATGCGCAGTCGGAATGGA
TCGGGTCCAGACAGCAGGGGATATGTTCAGTTACTACAGTGGAATGGTGG
TATTGCCGGGAAGTCTAG
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