Ggra3670.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3670.t1
Unique NameGgra3670.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length469
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1043924..1045330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705388.1
PFAMsRubis-subs-bind,SET
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Evalue8.93e-118
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota
EC2.1.1.43
Descriptionpeptidyl-lysine monomethylation
COG categoryI
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3670Ggra3670Gracilaria gracilis GNS1m malegenetig00000850_pilon 1043924..1045330 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3670.t1.stop1Ggra3670.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1043924..1043926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3670.t1.CDS1Ggra3670.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1043924..1045330 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3670.t1.exon1Ggra3670.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1043924..1045330 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3670.t1.start1Ggra3670.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1045328..1045330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3670.t1Ggra3670.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1043924..1045330 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3670.t1 ID=Ggra3670.t1|Name=Ggra3670.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=469bp
MLPTSFISPIPLPVQRSSANRCPCKRARFTLSLPSPFSPAPVKNPAAKKS
AEFVRWLRENGMYLSEVATWGRPMHPLAIADETTDDGEVSGRGLIAVKPI
LQGEPVFEVPHELILTKEVAVQNLPLDDEVDDYIAIACLLISERAKGEDS
FWKPYLDILPVDEDLIPLFRWSEDDLALLKGSPCLSACKSLRLKLKEEFD
SANAQHFSRNREQFPEDVFCEDAWEWAFAILFSRAIMLTAEQKIALVPYA
DLLNHNPFCSNYIDVQNKLLLDRKVVALYTDRPYGKMDQVFVTYGPKSNS
DLLLLYGFVSDRNPYDSVEIVVSLSESDPLYDRKLEYIRQSGISASSTFP
LYRDRYPMELIEFLRFCVADEDEFNNADFGDFINEVNETQVAQALIDACH
AALDNYPQTRADDDKLISDRKMFQMLSLKQRWAVRQRRAEKRILERTINN
IELEMSEPTFMFTETNNA*
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spliced messenger RNA

>Ggra3670.t1 ID=Ggra3670.t1|Name=Ggra3670.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000850_pilon:1043924..1045330- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCCACATCTTTTATATCCCCGATTCCCCTGCCGGTGCAGCGCTC
GTCGGCAAACCGCTGTCCATGCAAACGAGCAAGATTCACTCTTTCACTTC
CATCCCCATTCTCTCCGGCTCCAGTGAAGAACCCAGCTGCAAAGAAATCT
GCTGAATTCGTCCGATGGTTGCGAGAAAACGGCATGTATCTCTCTGAAGT
TGCTACGTGGGGTAGGCCAATGCATCCATTGGCTATTGCCGATGAAACGA
CTGATGATGGGGAAGTTTCCGGGAGAGGGTTAATAGCAGTGAAACCAATT
CTGCAAGGGGAGCCTGTTTTTGAAGTTCCTCATGAACTTATTCTTACGAA
GGAAGTTGCTGTACAAAACTTACCGTTGGATGATGAAGTAGATGACTACA
TTGCAATCGCTTGTCTCCTTATCTCAGAAAGAGCAAAGGGTGAAGATAGC
TTCTGGAAACCCTACCTCGACATCTTACCGGTTGATGAGGATCTAATTCC
TCTGTTTCGGTGGTCTGAGGATGATCTTGCATTGCTGAAAGGGAGCCCTT
GCCTATCAGCGTGTAAAAGCCTTCGACTTAAACTTAAAGAAGAGTTTGAT
TCGGCAAACGCCCAGCACTTCTCAAGGAACCGAGAGCAGTTTCCTGAAGA
CGTATTTTGTGAGGATGCATGGGAATGGGCTTTTGCTATCCTCTTCTCTC
GAGCGATTATGTTAACGGCCGAACAAAAGATCGCTCTCGTTCCATATGCA
GACCTTCTCAACCACAATCCTTTTTGTTCAAACTACATTGATGTCCAAAA
TAAACTACTTCTGGATCGCAAAGTGGTTGCGCTGTATACTGACAGGCCAT
ACGGGAAGATGGATCAGGTATTCGTCACTTATGGCCCCAAATCGAACTCT
GATTTGCTACTCCTCTATGGGTTCGTGTCAGACAGAAACCCGTATGACTC
TGTGGAGATTGTCGTTTCACTATCGGAATCTGATCCTCTGTACGACAGAA
AATTGGAGTACATTCGGCAATCGGGCATTTCTGCAAGCTCCACATTTCCC
CTTTACCGTGACCGTTATCCCATGGAACTCATAGAGTTCCTCAGATTTTG
TGTTGCTGATGAAGATGAATTCAACAATGCTGATTTTGGCGACTTCATCA
ACGAAGTGAACGAGACACAGGTCGCACAAGCACTAATAGATGCATGCCAT
GCGGCTCTAGATAATTACCCTCAAACCAGGGCGGACGACGACAAGTTAAT
CTCAGACAGGAAGATGTTTCAGATGTTGAGTCTTAAGCAGAGATGGGCTG
TGAGACAGAGAAGAGCTGAAAAACGAATTCTCGAACGGACGATAAATAAT
ATTGAGCTAGAAATGTCTGAACCGACCTTCATGTTTACAGAAACGAACAA
TGCTTAG
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protein sequence of Ggra3670.t1

>Ggra3670.t1 ID=Ggra3670.t1|Name=Ggra3670.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=469bp
MLPTSFISPIPLPVQRSSANRCPCKRARFTLSLPSPFSPAPVKNPAAKKS
AEFVRWLRENGMYLSEVATWGRPMHPLAIADETTDDGEVSGRGLIAVKPI
LQGEPVFEVPHELILTKEVAVQNLPLDDEVDDYIAIACLLISERAKGEDS
FWKPYLDILPVDEDLIPLFRWSEDDLALLKGSPCLSACKSLRLKLKEEFD
SANAQHFSRNREQFPEDVFCEDAWEWAFAILFSRAIMLTAEQKIALVPYA
DLLNHNPFCSNYIDVQNKLLLDRKVVALYTDRPYGKMDQVFVTYGPKSNS
DLLLLYGFVSDRNPYDSVEIVVSLSESDPLYDRKLEYIRQSGISASSTFP
LYRDRYPMELIEFLRFCVADEDEFNNADFGDFINEVNETQVAQALIDACH
AALDNYPQTRADDDKLISDRKMFQMLSLKQRWAVRQRRAEKRILERTINN
IELEMSEPTFMFTETNNA*
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mRNA from alignment at tig00000850_pilon:1043924..1045330-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3670.t1 ID=Ggra3670.t1|Name=Ggra3670.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000850_pilon:1043924..1045330- (Gracilaria gracilis GNS1m male)
ATGTTGCCCACATCTTTTATATCCCCGATTCCCCTGCCGGTGCAGCGCTC
GTCGGCAAACCGCTGTCCATGCAAACGAGCAAGATTCACTCTTTCACTTC
CATCCCCATTCTCTCCGGCTCCAGTGAAGAACCCAGCTGCAAAGAAATCT
GCTGAATTCGTCCGATGGTTGCGAGAAAACGGCATGTATCTCTCTGAAGT
TGCTACGTGGGGTAGGCCAATGCATCCATTGGCTATTGCCGATGAAACGA
CTGATGATGGGGAAGTTTCCGGGAGAGGGTTAATAGCAGTGAAACCAATT
CTGCAAGGGGAGCCTGTTTTTGAAGTTCCTCATGAACTTATTCTTACGAA
GGAAGTTGCTGTACAAAACTTACCGTTGGATGATGAAGTAGATGACTACA
TTGCAATCGCTTGTCTCCTTATCTCAGAAAGAGCAAAGGGTGAAGATAGC
TTCTGGAAACCCTACCTCGACATCTTACCGGTTGATGAGGATCTAATTCC
TCTGTTTCGGTGGTCTGAGGATGATCTTGCATTGCTGAAAGGGAGCCCTT
GCCTATCAGCGTGTAAAAGCCTTCGACTTAAACTTAAAGAAGAGTTTGAT
TCGGCAAACGCCCAGCACTTCTCAAGGAACCGAGAGCAGTTTCCTGAAGA
CGTATTTTGTGAGGATGCATGGGAATGGGCTTTTGCTATCCTCTTCTCTC
GAGCGATTATGTTAACGGCCGAACAAAAGATCGCTCTCGTTCCATATGCA
GACCTTCTCAACCACAATCCTTTTTGTTCAAACTACATTGATGTCCAAAA
TAAACTACTTCTGGATCGCAAAGTGGTTGCGCTGTATACTGACAGGCCAT
ACGGGAAGATGGATCAGGTATTCGTCACTTATGGCCCCAAATCGAACTCT
GATTTGCTACTCCTCTATGGGTTCGTGTCAGACAGAAACCCGTATGACTC
TGTGGAGATTGTCGTTTCACTATCGGAATCTGATCCTCTGTACGACAGAA
AATTGGAGTACATTCGGCAATCGGGCATTTCTGCAAGCTCCACATTTCCC
CTTTACCGTGACCGTTATCCCATGGAACTCATAGAGTTCCTCAGATTTTG
TGTTGCTGATGAAGATGAATTCAACAATGCTGATTTTGGCGACTTCATCA
ACGAAGTGAACGAGACACAGGTCGCACAAGCACTAATAGATGCATGCCAT
GCGGCTCTAGATAATTACCCTCAAACCAGGGCGGACGACGACAAGTTAAT
CTCAGACAGGAAGATGTTTCAGATGTTGAGTCTTAAGCAGAGATGGGCTG
TGAGACAGAGAAGAGCTGAAAAACGAATTCTCGAACGGACGATAAATAAT
ATTGAGCTAGAAATGTCTGAACCGACCTTCATGTTTACAGAAACGAACAA
TGCTTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1043924..1045330-

>Ggra3670.t1 ID=Ggra3670.t1|Name=Ggra3670.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00000850_pilon:1043924..1045330- (Gracilaria gracilis GNS1m male)
ATGTTGCCCACATCTTTTATATCCCCGATTCCCCTGCCGGTGCAGCGCTC
GTCGGCAAACCGCTGTCCATGCAAACGAGCAAGATTCACTCTTTCACTTC
CATCCCCATTCTCTCCGGCTCCAGTGAAGAACCCAGCTGCAAAGAAATCT
GCTGAATTCGTCCGATGGTTGCGAGAAAACGGCATGTATCTCTCTGAAGT
TGCTACGTGGGGTAGGCCAATGCATCCATTGGCTATTGCCGATGAAACGA
CTGATGATGGGGAAGTTTCCGGGAGAGGGTTAATAGCAGTGAAACCAATT
CTGCAAGGGGAGCCTGTTTTTGAAGTTCCTCATGAACTTATTCTTACGAA
GGAAGTTGCTGTACAAAACTTACCGTTGGATGATGAAGTAGATGACTACA
TTGCAATCGCTTGTCTCCTTATCTCAGAAAGAGCAAAGGGTGAAGATAGC
TTCTGGAAACCCTACCTCGACATCTTACCGGTTGATGAGGATCTAATTCC
TCTGTTTCGGTGGTCTGAGGATGATCTTGCATTGCTGAAAGGGAGCCCTT
GCCTATCAGCGTGTAAAAGCCTTCGACTTAAACTTAAAGAAGAGTTTGAT
TCGGCAAACGCCCAGCACTTCTCAAGGAACCGAGAGCAGTTTCCTGAAGA
CGTATTTTGTGAGGATGCATGGGAATGGGCTTTTGCTATCCTCTTCTCTC
GAGCGATTATGTTAACGGCCGAACAAAAGATCGCTCTCGTTCCATATGCA
GACCTTCTCAACCACAATCCTTTTTGTTCAAACTACATTGATGTCCAAAA
TAAACTACTTCTGGATCGCAAAGTGGTTGCGCTGTATACTGACAGGCCAT
ACGGGAAGATGGATCAGGTATTCGTCACTTATGGCCCCAAATCGAACTCT
GATTTGCTACTCCTCTATGGGTTCGTGTCAGACAGAAACCCGTATGACTC
TGTGGAGATTGTCGTTTCACTATCGGAATCTGATCCTCTGTACGACAGAA
AATTGGAGTACATTCGGCAATCGGGCATTTCTGCAAGCTCCACATTTCCC
CTTTACCGTGACCGTTATCCCATGGAACTCATAGAGTTCCTCAGATTTTG
TGTTGCTGATGAAGATGAATTCAACAATGCTGATTTTGGCGACTTCATCA
ACGAAGTGAACGAGACACAGGTCGCACAAGCACTAATAGATGCATGCCAT
GCGGCTCTAGATAATTACCCTCAAACCAGGGCGGACGACGACAAGTTAAT
CTCAGACAGGAAGATGTTTCAGATGTTGAGTCTTAAGCAGAGATGGGCTG
TGAGACAGAGAAGAGCTGAAAAACGAATTCTCGAACGGACGATAAATAAT
ATTGAGCTAGAAATGTCTGAACCGACCTTCATGTTTACAGAAACGAACAA
TGCTTAG
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