Ggra3704.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3704.t1
Unique Name	Ggra3704.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	639

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1146326..1148242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706206.1
Preferred name	FIP1
PFAMs	Fip1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14405
KEGG Pathway	ko03015,map03015
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006725,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0008334,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017022,GO:0030674,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042221,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0060090,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0098787,GO:0098789,GO:1901360
Evalue	7.75e-19
EggNOG OGs	COG5213@1\|root,KOG1049@2759\|Eukaryota
Description	pre-mRNA cleavage required for polyadenylation
COG category	A
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3704	Ggra3704	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1146326..1148242 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3704.t1.start1	Ggra3704.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1146326..1146328 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3704.t1.CDS1	Ggra3704.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1146326..1148242 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3704.t1.exon1	Ggra3704.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1146326..1148242 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3704.t1.stop1	Ggra3704.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1148240..1148242 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3704.t1	Ggra3704.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1146326..1148242 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1146326..1148242+
coding sequence from alignment at tig00000850_pilon:1146326..1148242+

mRNA sequence

>Ggra3704.t1 ID=Ggra3704.t1|Name=Ggra3704.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp
MATGTDVADEDFELYGEPVPESPSSGKKEEVKVESDEKSVLVEASPQEPR
HNDDTQCADLTAASKETVPYENGHENDEGKVEASGPADGALHSPEYQQVK
QEKDDANSSSVAAEVSAKEKSADPVDQGGKQTTEHEGEDQSETAKDEEGG
DDDEEEEEEEDDESDDDDFDVILNVDEADVASRPMNTSFGSIGKVRLGTN
KWQRPGYVPPERVIGNTSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEI
GKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKT
VDGNKNQGTNPPRNVNQNAAKPPINQQHGNRNRMGAPDQMGGGVNNKLGH
QPAMLPGMMGLPPPGSMQPMMGMPNMANMRNPPEHMQGLPQNMHQFPPFN
PKDANPNGRGYAGPMPGYAFMPGNQPNENMFLYHGMPNFGAMGLPNAMPP
QPGMGRGDPNNRGFPGQMNMNPGQPPQDKLNKISPVRHMGQDDGQNMDGR
RRSGQGHPGSRFGNAQGGQGKSHQGRHDHDRRQRWGDNRGHMDRRQDFER
HGNDPGHGQGRRGYDDRAYGDRNQDRRRWNDNREEGYENNRRRGGNYDGP
GRSENRRDYDRDRDRGRDYRKRQSSSRDFDDDRKRTRR*

spliced messenger RNA

>Ggra3704.t1 ID=Ggra3704.t1|Name=Ggra3704.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00000850_pilon:1146326..1148242+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCGGCACAGATGTTGCCGACGAAGACTTTGAACTCTACGGAGA
ACCGGTTCCAGAAAGCCCCTCTAGTGGGAAGAAGGAAGAAGTGAAAGTGG
AAAGTGATGAGAAAAGTGTTCTTGTCGAAGCAAGCCCACAGGAACCTCGA
CATAATGATGACACCCAGTGCGCGGATTTGACTGCAGCATCTAAAGAAAC
AGTTCCTTATGAAAACGGGCATGAAAACGATGAAGGCAAGGTAGAGGCTA
GTGGCCCAGCTGATGGAGCTCTACATAGTCCAGAGTACCAACAGGTCAAG
CAGGAAAAGGATGATGCGAATTCATCCAGTGTAGCTGCAGAAGTTTCCGC
CAAAGAAAAGTCAGCTGATCCGGTGGATCAAGGCGGAAAGCAAACAACTG
AGCATGAAGGTGAAGACCAGTCTGAGACAGCTAaagacgaagaagggggt
gacgatgacgaagaagaggaagaagaagaagacgacgaaagtgatgatga
cgactttgatgtaatcttgaacgttgatgaggctgatgTGGCGAGTAGAC
CGATGAACACATCGTTTGGGTCTATTGGCAAAGTTCGTCTAGGAACAAAC
AAATGGCAGCGCCCGGGATATGTACCTCCGGAGAGAGTCATTGGCAATAC
TTCTCAGGGTGCCGCTAGAACTGGAGGACTGCTGTCTATGTTGCCAACAC
CAACGATGCAAGTCGGGAATGCTCAGAAAAGTGTTTATGATCTTGAGATT
GGGAAGCTTACTGAGAAACCATGGCTGGACGCAAAGGCAGATATGACGGA
TTACTTCAATTACGGATTCACAGAAGAAACTTGGAAGCTATACTGCGAAC
GGCAGAAGCAAATGCGCTTAGAGGTCAGCATGCTCGCAAAGATTAAAACA
GTTGATGGAAACAAGAACCAAGGAACGAATCCACCTCGCAATGTAAACCA
GAACGCTGCTAAACCTCCCATAAACCAGCAACATGGGAATCGCAACCGCA
TGGGCGCGCCGGACCAGATGGGTGGGGGTGTTAATAACAAGCTTGGGCAT
CAACCAGCAATGCTCCCTGGGATGATGGGCTTACCTCCTCCTGGATCCAT
GCAGCCGATGATGGGCATGCCGAATATGGCGAACATGCGAAATCCACCCG
AGCACATGCAGGGCTTACCGCAGAACATGCATCAGTTTCCCCCATTCAAT
CCCAAAGATGCAAATCCAAATGGTCGCGGATATGCTGGACCTATGCCGGG
GTACGCTTTCATGCCGGGCAACCAACCAAACGAGAATATGTTTCTCTACC
ACGGAATGCCTAATTTCGGAGCAATGGGTTTACCAAACGCAATGCCGCCG
CAACCGGGCATGGGGCGAGGTGACCCTAACAATCGAGGTTTTCCAGGTCA
GATGAATATGAATCCAGGACAACCTCCACAGGATAAGCTTAACAAAATAT
CGCCCGTAAGGCATATGGGGCAAGACGACGGGCAAAACATGGACGGAAGG
CGGCGCTCTGGACAAGGTCATCCAGGCTCTCGCTTTGGTAACGCTCAGGG
CGGGCAAGGTAAATCTCATCAAGGAAGACACGACCATGACAGAAGACAGC
GGTGGGGAGATAACAGAGGGCACATGGATCGAAGGCAAGATTTTGAGAGG
CACGGAAACGATCCCGGACATGGGCAAGGAAGAAGGGGATATGATGATCG
CGCGTATGGTGATCGCAATCAGGACAGGAGGCGATGGAATGACAATAGAG
AGGAAGGGTATGAAAACAACAGGCGCCGTGGTGGAAACTATGACGGTCCC
GGAAGGTCCGAGAATCGAAGAGACTACGACAGAGATCGTGACCGAGGTAG
AGACTATCGGAAACGACAATCGTCCTCGAGAGATTTTGACGATGATAGGA
AGCGGACGAGAAGATGA

protein sequence of Ggra3704.t1

>Ggra3704.t1 ID=Ggra3704.t1|Name=Ggra3704.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=639bp
MATGTDVADEDFELYGEPVPESPSSGKKEEVKVESDEKSVLVEASPQEPR
HNDDTQCADLTAASKETVPYENGHENDEGKVEASGPADGALHSPEYQQVK
QEKDDANSSSVAAEVSAKEKSADPVDQGGKQTTEHEGEDQSETAKDEEGG
DDDEEEEEEEDDESDDDDFDVILNVDEADVASRPMNTSFGSIGKVRLGTN
KWQRPGYVPPERVIGNTSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEI
GKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKT
VDGNKNQGTNPPRNVNQNAAKPPINQQHGNRNRMGAPDQMGGGVNNKLGH
QPAMLPGMMGLPPPGSMQPMMGMPNMANMRNPPEHMQGLPQNMHQFPPFN
PKDANPNGRGYAGPMPGYAFMPGNQPNENMFLYHGMPNFGAMGLPNAMPP
QPGMGRGDPNNRGFPGQMNMNPGQPPQDKLNKISPVRHMGQDDGQNMDGR
RRSGQGHPGSRFGNAQGGQGKSHQGRHDHDRRQRWGDNRGHMDRRQDFER
HGNDPGHGQGRRGYDDRAYGDRNQDRRRWNDNREEGYENNRRRGGNYDGP
GRSENRRDYDRDRDRGRDYRKRQSSSRDFDDDRKRTRR*

mRNA from alignment at tig00000850_pilon:1146326..1148242+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3704.t1 ID=Ggra3704.t1|Name=Ggra3704.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00000850_pilon:1146326..1148242+ (Gracilaria gracilis GNS1m male)
ATGGCGACCGGCACAGATGTTGCCGACGAAGACTTTGAACTCTACGGAGA
ACCGGTTCCAGAAAGCCCCTCTAGTGGGAAGAAGGAAGAAGTGAAAGTGG
AAAGTGATGAGAAAAGTGTTCTTGTCGAAGCAAGCCCACAGGAACCTCGA
CATAATGATGACACCCAGTGCGCGGATTTGACTGCAGCATCTAAAGAAAC
AGTTCCTTATGAAAACGGGCATGAAAACGATGAAGGCAAGGTAGAGGCTA
GTGGCCCAGCTGATGGAGCTCTACATAGTCCAGAGTACCAACAGGTCAAG
CAGGAAAAGGATGATGCGAATTCATCCAGTGTAGCTGCAGAAGTTTCCGC
CAAAGAAAAGTCAGCTGATCCGGTGGATCAAGGCGGAAAGCAAACAACTG
AGCATGAAGGTGAAGACCAGTCTGAGACAGCTAaagacgaagaagggggt
gacgatgacgaagaagaggaagaagaagaagacgacgaaagtgatgatga
cgactttgatgtaatcttgaacgttgatgaggctgatgTGGCGAGTAGAC
CGATGAACACATCGTTTGGGTCTATTGGCAAAGTTCGTCTAGGAACAAAC
AAATGGCAGCGCCCGGGATATGTACCTCCGGAGAGAGTCATTGGCAATAC
TTCTCAGGGTGCCGCTAGAACTGGAGGACTGCTGTCTATGTTGCCAACAC
CAACGATGCAAGTCGGGAATGCTCAGAAAAGTGTTTATGATCTTGAGATT
GGGAAGCTTACTGAGAAACCATGGCTGGACGCAAAGGCAGATATGACGGA
TTACTTCAATTACGGATTCACAGAAGAAACTTGGAAGCTATACTGCGAAC
GGCAGAAGCAAATGCGCTTAGAGGTCAGCATGCTCGCAAAGATTAAAACA
GTTGATGGAAACAAGAACCAAGGAACGAATCCACCTCGCAATGTAAACCA
GAACGCTGCTAAACCTCCCATAAACCAGCAACATGGGAATCGCAACCGCA
TGGGCGCGCCGGACCAGATGGGTGGGGGTGTTAATAACAAGCTTGGGCAT
CAACCAGCAATGCTCCCTGGGATGATGGGCTTACCTCCTCCTGGATCCAT
GCAGCCGATGATGGGCATGCCGAATATGGCGAACATGCGAAATCCACCCG
AGCACATGCAGGGCTTACCGCAGAACATGCATCAGTTTCCCCCATTCAAT
CCCAAAGATGCAAATCCAAATGGTCGCGGATATGCTGGACCTATGCCGGG
GTACGCTTTCATGCCGGGCAACCAACCAAACGAGAATATGTTTCTCTACC
ACGGAATGCCTAATTTCGGAGCAATGGGTTTACCAAACGCAATGCCGCCG
CAACCGGGCATGGGGCGAGGTGACCCTAACAATCGAGGTTTTCCAGGTCA
GATGAATATGAATCCAGGACAACCTCCACAGGATAAGCTTAACAAAATAT
CGCCCGTAAGGCATATGGGGCAAGACGACGGGCAAAACATGGACGGAAGG
CGGCGCTCTGGACAAGGTCATCCAGGCTCTCGCTTTGGTAACGCTCAGGG
CGGGCAAGGTAAATCTCATCAAGGAAGACACGACCATGACAGAAGACAGC
GGTGGGGAGATAACAGAGGGCACATGGATCGAAGGCAAGATTTTGAGAGG
CACGGAAACGATCCCGGACATGGGCAAGGAAGAAGGGGATATGATGATCG
CGCGTATGGTGATCGCAATCAGGACAGGAGGCGATGGAATGACAATAGAG
AGGAAGGGTATGAAAACAACAGGCGCCGTGGTGGAAACTATGACGGTCCC
GGAAGGTCCGAGAATCGAAGAGACTACGACAGAGATCGTGACCGAGGTAG
AGACTATCGGAAACGACAATCGTCCTCGAGAGATTTTGACGATGATAGGA
AGCGGACGAGAAGATGA

Coding sequence (CDS) from alignment at tig00000850_pilon:1146326..1148242+

>Ggra3704.t1 ID=Ggra3704.t1|Name=Ggra3704.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1917bp|location=Sequence derived from alignment at tig00000850_pilon:1146326..1148242+ (Gracilaria gracilis GNS1m male)
ATGGCGACCGGCACAGATGTTGCCGACGAAGACTTTGAACTCTACGGAGA
ACCGGTTCCAGAAAGCCCCTCTAGTGGGAAGAAGGAAGAAGTGAAAGTGG
AAAGTGATGAGAAAAGTGTTCTTGTCGAAGCAAGCCCACAGGAACCTCGA
CATAATGATGACACCCAGTGCGCGGATTTGACTGCAGCATCTAAAGAAAC
AGTTCCTTATGAAAACGGGCATGAAAACGATGAAGGCAAGGTAGAGGCTA
GTGGCCCAGCTGATGGAGCTCTACATAGTCCAGAGTACCAACAGGTCAAG
CAGGAAAAGGATGATGCGAATTCATCCAGTGTAGCTGCAGAAGTTTCCGC
CAAAGAAAAGTCAGCTGATCCGGTGGATCAAGGCGGAAAGCAAACAACTG
AGCATGAAGGTGAAGACCAGTCTGAGACAGCTAaagacgaagaagggggt
gacgatgacgaagaagaggaagaagaagaagacgacgaaagtgatgatga
cgactttgatgtaatcttgaacgttgatgaggctgatgTGGCGAGTAGAC
CGATGAACACATCGTTTGGGTCTATTGGCAAAGTTCGTCTAGGAACAAAC
AAATGGCAGCGCCCGGGATATGTACCTCCGGAGAGAGTCATTGGCAATAC
TTCTCAGGGTGCCGCTAGAACTGGAGGACTGCTGTCTATGTTGCCAACAC
CAACGATGCAAGTCGGGAATGCTCAGAAAAGTGTTTATGATCTTGAGATT
GGGAAGCTTACTGAGAAACCATGGCTGGACGCAAAGGCAGATATGACGGA
TTACTTCAATTACGGATTCACAGAAGAAACTTGGAAGCTATACTGCGAAC
GGCAGAAGCAAATGCGCTTAGAGGTCAGCATGCTCGCAAAGATTAAAACA
GTTGATGGAAACAAGAACCAAGGAACGAATCCACCTCGCAATGTAAACCA
GAACGCTGCTAAACCTCCCATAAACCAGCAACATGGGAATCGCAACCGCA
TGGGCGCGCCGGACCAGATGGGTGGGGGTGTTAATAACAAGCTTGGGCAT
CAACCAGCAATGCTCCCTGGGATGATGGGCTTACCTCCTCCTGGATCCAT
GCAGCCGATGATGGGCATGCCGAATATGGCGAACATGCGAAATCCACCCG
AGCACATGCAGGGCTTACCGCAGAACATGCATCAGTTTCCCCCATTCAAT
CCCAAAGATGCAAATCCAAATGGTCGCGGATATGCTGGACCTATGCCGGG
GTACGCTTTCATGCCGGGCAACCAACCAAACGAGAATATGTTTCTCTACC
ACGGAATGCCTAATTTCGGAGCAATGGGTTTACCAAACGCAATGCCGCCG
CAACCGGGCATGGGGCGAGGTGACCCTAACAATCGAGGTTTTCCAGGTCA
GATGAATATGAATCCAGGACAACCTCCACAGGATAAGCTTAACAAAATAT
CGCCCGTAAGGCATATGGGGCAAGACGACGGGCAAAACATGGACGGAAGG
CGGCGCTCTGGACAAGGTCATCCAGGCTCTCGCTTTGGTAACGCTCAGGG
CGGGCAAGGTAAATCTCATCAAGGAAGACACGACCATGACAGAAGACAGC
GGTGGGGAGATAACAGAGGGCACATGGATCGAAGGCAAGATTTTGAGAGG
CACGGAAACGATCCCGGACATGGGCAAGGAAGAAGGGGATATGATGATCG
CGCGTATGGTGATCGCAATCAGGACAGGAGGCGATGGAATGACAATAGAG
AGGAAGGGTATGAAAACAACAGGCGCCGTGGTGGAAACTATGACGGTCCC
GGAAGGTCCGAGAATCGAAGAGACTACGACAGAGATCGTGACCGAGGTAG
AGACTATCGGAAACGACAATCGTCCTCGAGAGATTTTGACGATGATAGGA
AGCGGACGAGAAGATGA