Ggra3704.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3704.t1
Unique NameGgra3704.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length639
Homology
BLAST of Ggra3704.t1 vs. uniprot
Match: A0A2V3IXP8 (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXP8_9FLOR)

HSP 1 Score: 493 bits (1268), Expect = 4.770e-164
Identity = 368/651 (56.53%), Postives = 414/651 (63.59%), Query Frame = 0
Query:    1 MATGTDVADEDFELYGEPVPESP-SSGKKEEVKVESDEKSVLVEAS---PQEPRHNDDTQCADLTAASK---ETVPYENGHENDEGKV-EASGPADGALHS-PEYQQVKQEKDDANSSSVAAEVSAKEKSADPVDQGGKQTTEHEGEDQSETAKDXXXXXXXXXXXXXXXXXXXXXXFDVILNVDEADVASRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNTSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQGTNPPRNVNQNAAKPPINQQHGNRNRMGAPDQMGGGVNNKLGHQPAMLPGMMGLPPPGSMQPMMG-------MPNM-ANMRNPPEHMQGLPQNMHQFPPFNPKDANPNGRGYAGPMPGYAFMPGNQPNENM------FLYHGMPNFG-AMGLPNAMPPQPGMGRGDPNNRGFPGQMNMNPGQPPQDKL-NKISPVRHMGQDDGQNMDGRRRSGQGHPGSRFGNAQGGQGKSHQGRHDHD-RRQRWGDNRGHMDRRQDFERHGNDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYENNRRRGGNYDGPGRSENRRDYDRDXXXGRDYRKRQSS 625
            MAT  ++A+ED ELYGEPVPESP  +GK+E  +V+ +       AS   P +P H    Q    + A++   +++  ++G +   G V + +G ++G L   P+  Q+    D   +  +       EK+AD             G++Q +T     XXXXXXXXXXXXXXXXXXX FDVILNVD+ADVASRP NTSFGSIGKVRLGTNKWQRPGYVPPERVIGN+SQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKAD+TDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNK Q  N  R VN +  KP   QQH  R R    DQ     N KL  QP M       PPPG M            MPN+  NMRNP             FP F+P D    GRG+  P P Y  M   Q NENM      F        G  M +P  +PP PGMGRGD   RGFPGQM M   Q PQDK  ++ISP RH  QD+ QN DGRRRSGQGH  SRFGNAQG Q K HQGRHDHD RRQRW DNRGH DRRQDF+RHG D       X  XXXXXXXXXXX           Y+N RRRGG YDG   S+NRRD+DRD   GRDYRKR SS
Sbjct:    1 MATTAELAEEDLELYGEPVPESPVKAGKEESGQVKDESLPGEQNASNGIPDDPPHPITGQKETASQAAQCAPDSIKTDDGEKGALGTVRDETGGSNGTLEEVPQENQLSGNDDKTMAQKI-------EKNAD------------NGDNQKDTNTGENXXXXXXXXXXXXXXXXXXXDFDVILNVDDADVASRPANTSFGSIGKVRLGTNKWQRPGYVPPERVIGNSSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADLTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKTQAGNTVRTVNPSPVKPSQTQQHAPRGRPTGQDQAIAAPNTKLPQQPPM-------PPPGMMPXXXXXXXXXXXMPNIPGNMRNP-XXXXXXXXXXXXFP-FHPSDPAGKGRGFTPPFPSYPPMQNGQRNENMKNNMFPFXXXXXXXXGMGMPMPGTVPP-PGMGRGDGTGRGFPGQMAMGNNQQPQDKHGSRISPGRHGPQDENQNTDGRRRSGQGHQSSRFGNAQGAQMK-HQGRHDHDGRRQRWVDNRGHGDRRQDFDRHGGD-GGHGGRXGYXXXXXXXXXXXRRRWNDNREEGYDN-RRRGGGYDGQRMSDNRRDFDRDRERGRDYRKRPSS 619          
BLAST of Ggra3704.t1 vs. uniprot
Match: R7QHW7 (Fip1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHW7_CHOCR)

HSP 1 Score: 166 bits (421), Expect = 1.490e-41
Identity = 121/279 (43.37%), Postives = 147/279 (52.69%), Query Frame = 0
Query:  214 IGNTSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQGTNPPRNVNQNAAKPPINQQHGNRNRMGA-PDQMGGGVNNKLGHQPAMLPGM---MGLPPPGSMQ-----PMMGMPNMANMRNPPEHMQGLPQNMHQFPPFNPKDANPNGRGYAGPMPGYAFMP------GNQPNENMF-LYHGMPNFGAMGLPNAMPPQPGM---------GRGDPNNRGFPGQ 467
            +GNT Q   R GG+LSMLPTPTMQ+G +QKSVYD+EIGK TEKPWL+  AD++DYFNYGF EE+WK+YCERQ QMRLE SMLAKIKTVDGNK+      + + Q   K  + QQ+G     G     +  GV  K+  +PA+        G+P           P+ GMP M  M + P     +P NM  FP F P   N  G  +  P P            G  P   MF     MP     G+P  MP    M         GRG  + RGFPGQ
Sbjct:    1 MGNTMQSGGRAGGMLSMLPTPTMQIGVSQKSVYDMEIGKQTEKPWLERGADLSDYFNYGFNEESWKMYCERQMQMRLEDSMLAKIKTVDGNKSVSAAAGQRLPQLGQKITLPQQNGVARTAGMLAAAVRAGVQAKVA-KPAVAAAPSAGQGVPXXXXXXXXXXGPLPGMPGMMKMGDMP-----MPPNMPPFP-FQPGMLNGKGGAFQHPFPXXXXXXAQRQGDGKNPTPPMFPXXXXMP-----GMPPGMPXXXXMPXXXXXXXMGRGGSHGRGFPGQ 267          
BLAST of Ggra3704.t1 vs. uniprot
Match: A0A5J4Z2U3 (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2U3_PORPP)

HSP 1 Score: 140 bits (354), Expect = 4.660e-32
Identity = 97/217 (44.70%), Postives = 116/217 (53.46%), Query Frame = 0
Query:  171 VILNVDEA--DVASRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNTSQGA---ARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQGTNPPRNVNQNAAKPPINQQHGNRNRMGAPDQMGGGVNNK------LGHQPAMLPGM-----MGLPPPGSMQPMM 371
            V+LN   A  DVA+ P N   G+  K   G NKWQRPG   P    G    G    A   GLLSMLPTPT+ +    +SVYD+EIG+L EKPW +  AD+T+YFNYGFTEETWK+YCERQ QMRLE +  AKIKT    +N                      G  N  GAP+ + GG+  K      LG  P M+PG      M +PP G M P M
Sbjct:  102 VVLNAPGAVGDVAADP-NAPRGASVKFAAGVNKWQRPGNAAPGGASGAMPGGVXXXAAPPGLLSMLPTPTVNMPLHARSVYDIEIGRLAEKPWRERGADITEYFNYGFTEETWKVYCERQMQMRLESAGTAKIKTQAATENWP--------------------GIANSDGAPN-IDGGMGPKPPGPMPLGVPPGMMPGFPPMGGMAMPPFGMMMPAM 296          
BLAST of Ggra3704.t1 vs. uniprot
Match: A0A6T6N6Z9 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6N6Z9_9RHOD)

HSP 1 Score: 132 bits (333), Expect = 1.160e-31
Identity = 73/130 (56.15%), Postives = 86/130 (66.15%), Query Frame = 0
Query:  181 ASRPMNTSFGSIGKVRLGTNKWQRPGYVPPE-RVIGNTSQGAARTGGLLSMLPTPTMQVGNA-----QKSVYD---LEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTV 301
            AS  ++T  G +G     TN+WQRPG V     V+G+       +GGLLSMLP PT+          QKSVY+   LEI KL EKPW +  AD+T+YFNYGFTEETWKLYCERQ QMRLE +MLAKIKTV
Sbjct:   71 ASGNIDTIGGGVGVKFGATNRWQRPGVVSGSGNVMGSGVXXXXXSGGLLSMLPVPTLNQSGIHGVTQQKSVYEFKMLEISKLAEKPWRERGADITEYFNYGFTEETWKLYCERQLQMRLESTMLAKIKTV 200          
BLAST of Ggra3704.t1 vs. uniprot
Match: A0A1X6PAB0 (Fip1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAB0_PORUM)

HSP 1 Score: 129 bits (324), Expect = 8.640e-28
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0
Query:  225 GGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDG 303
            G +L+MLPTPTM VG  Q+SVYDLEIGKL EKPW D  AD+T+YFNYGFTEETW+LYCERQ QMRLE SMLAKIK +DG
Sbjct:  310 GNILAMLPTPTMNVGANQRSVYDLEIGKLPEKPWRDRGADITEYFNYGFTEETWRLYCERQMQMRLEASMLAKIK-IDG 387          
BLAST of Ggra3704.t1 vs. uniprot
Match: M2W1X7 (Fip1 domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W1X7_GALSU)

HSP 1 Score: 95.5 bits (236), Expect = 3.400e-18
Identity = 53/142 (37.32%), Postives = 76/142 (53.52%), Query Frame = 0
Query:  176 DEADVASRPMNTSFGSIGKVRLGTNK-----------WQRPGYVPPER--VIGNTSQGAARTGGLLSMLPTPTMQVGNAQK--SVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVD 302
            D+ ++   P +T +G  G    G +K           WQRPGY       ++G+     +R G  LS++P P      A    SV++ EI  L EKPW +  A+++DYFNYGFTE+TW+ YC RQ+ MRL    L  I+T+D
Sbjct:   51 DDVNIVLEPSSTYYG--GDTSTGDSKGLFVGGTTTRHWQRPGYSSTAEGGIVGSGVSAYSRGGVDLSLVPKPPTDFPGAHVDYSVFENEIDSLEEKPWREKGAELSDYFNYGFTEDTWREYCRRQQMMRLYSQSLMPIRTLD 190          
BLAST of Ggra3704.t1 vs. uniprot
Match: A0A8J4PYA9 (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PYA9_9MYCE)

HSP 1 Score: 91.7 bits (226), Expect = 5.800e-16
Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 0
Query:  170 DVILNVDEADVASRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNTSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKN 306
            +++L+ +  + A R   T+F + GK     N ++ P  + P   IG     A +T    +  PT       AQK++YD++I    +KPWL   AD+TDYFNY FTEETWK YCERQ QMR E+S   KIK  +   N
Sbjct:   73 NIVLDTESVE-AGRATGTAFRTPGK-----NYFRNPTSITPG--IGAKYSLAKQT----TSYPTSNRP---AQKTIYDVDIESFEDKPWLKPGADITDYFNYNFTEETWKAYCERQNQMRAELSNQGKIKGYESKNN 194          
BLAST of Ggra3704.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448934 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448934)

HSP 1 Score: 90.9 bits (224), Expect = 9.590e-16
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 0
Query:  200 NKWQRPGYVPPERVIGNTSQGAARTGGLLSMLPTPTMQ--VGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKNQ 307
            NK  +    P    + N +     TGG  S++     Q      QKS+YD+ +  L +KPW    AD+TDYFNY FTEETW++YCERQ Q+R E + L KIK+ +  KNQ
Sbjct:   86 NKTTKSSSGPKAGFLRNPTSITPGTGGKYSLVKQANTQYQANRPQKSIYDVNLDSLEDKPWNKPGADITDYFNYNFTEETWRMYCERQNQLRAEQANLGKIKSYES-KNQ 194          
BLAST of Ggra3704.t1 vs. uniprot
Match: F0ZAJ1 (Fip1 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZAJ1_DICPU)

HSP 1 Score: 90.5 bits (223), Expect = 1.410e-15
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0
Query:  224 TGGLLSMLPTPT---MQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKTVDGNKN 306
            +GG  S   TP    +     QK++Y+++I    EKPWL   AD++DYFNY FTE+TWK YCERQ QMRLEV+ L KIK  +   N
Sbjct:  106 SGGKFSTKQTPAGAFVPAKTNQKTIYEVDIDSFEEKPWLKPGADISDYFNYNFTEDTWKAYCERQNQMRLEVNNLGKIKGYESKNN 191          
BLAST of Ggra3704.t1 vs. uniprot
Match: A0A3S3P8U4 (Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P8U4_9ACAR)

HSP 1 Score: 90.9 bits (224), Expect = 1.910e-15
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 0
Query:  181 ASRPMNTSFGSIGKVRLGTNKWQRPGYVPPERVIGNTSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEIGKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEV 292
            ++ P ++S+ S   V L   K + P + P  +V    S    +T GL        + + N   S+YDL +  L EKPW    AD+TDYFNYGFTEETWK+YCERQK++RLE+
Sbjct:  113 STTPPSSSYNSYAPVNLNIGK-RGPAFGPGGQVTNAASAAKGKTSGL----DIDAVGLYNGG-SIYDLNLDALEEKPWRKPGADITDYFNYGFTEETWKIYCERQKKLRLEL 218          
The following BLAST results are available for this feature:
BLAST of Ggra3704.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXP84.770e-16456.53Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Gra... [more]
R7QHW71.490e-4143.37Fip1 domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A5J4Z2U34.660e-3244.70Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Por... [more]
A0A6T6N6Z91.160e-3156.15Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6PAB08.640e-2877.22Fip1 domain-containing protein n=1 Tax=Porphyra um... [more]
M2W1X73.400e-1837.32Fip1 domain-containing protein n=1 Tax=Galdieria s... [more]
A0A8J4PYA95.800e-1640.15Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064489349.590e-1642.73hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZAJ11.410e-1550.00Fip1 domain-containing protein n=1 Tax=Dictyosteli... [more]
A0A3S3P8U41.910e-1542.86Pre-mRNA 3'-end-processing factor FIP1 n=1 Tax=Din... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007854Pre-mRNA polyadenylation factor Fip1 domainPFAMPF05182Fip1coord: 247..289
e-value: 6.3E-19
score: 67.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..638
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 444..638
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 464..478
NoneNo IPR availablePANTHERPTHR36884:SF4FIP1[III]-LIKE PROTEINcoord: 243..331
IPR044976FIPS3/FIPS5-likePANTHERPTHR36884FIP1[III]-LIKE PROTEINcoord: 243..331

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1146326..1148242 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3704.t1Ggra3704.t1Gracilaria gracilis GNS1m malemRNAtig00000850_pilon 1146326..1148242 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3704.t1 ID=Ggra3704.t1|Name=Ggra3704.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=639bp
MATGTDVADEDFELYGEPVPESPSSGKKEEVKVESDEKSVLVEASPQEPR
HNDDTQCADLTAASKETVPYENGHENDEGKVEASGPADGALHSPEYQQVK
QEKDDANSSSVAAEVSAKEKSADPVDQGGKQTTEHEGEDQSETAKDEEGG
DDDEEEEEEEDDESDDDDFDVILNVDEADVASRPMNTSFGSIGKVRLGTN
KWQRPGYVPPERVIGNTSQGAARTGGLLSMLPTPTMQVGNAQKSVYDLEI
GKLTEKPWLDAKADMTDYFNYGFTEETWKLYCERQKQMRLEVSMLAKIKT
VDGNKNQGTNPPRNVNQNAAKPPINQQHGNRNRMGAPDQMGGGVNNKLGH
QPAMLPGMMGLPPPGSMQPMMGMPNMANMRNPPEHMQGLPQNMHQFPPFN
PKDANPNGRGYAGPMPGYAFMPGNQPNENMFLYHGMPNFGAMGLPNAMPP
QPGMGRGDPNNRGFPGQMNMNPGQPPQDKLNKISPVRHMGQDDGQNMDGR
RRSGQGHPGSRFGNAQGGQGKSHQGRHDHDRRQRWGDNRGHMDRRQDFER
HGNDPGHGQGRRGYDDRAYGDRNQDRRRWNDNREEGYENNRRRGGNYDGP
GRSENRRDYDRDRDRGRDYRKRQSSSRDFDDDRKRTRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007854Fip1_dom
IPR044976FIPS3/FIPS5-like