Ggra3839.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3839.t1
Unique NameGgra3839.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length577
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2195454..2197184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703559.1
PFAMsILVD_EDD
Max annot lvl2759|Eukaryota
KEGG rclassRC00468,RC01714
KEGG koko:K01687
KEGG ReactionR01209,R04441,R05070
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Evalue8.41e-296
EggNOG OGsCOG0129@1|root,KOG2448@2759|Eukaryota
EC4.2.1.9
Descriptiondihydroxy-acid dehydratase activity
COG categoryEG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3839Ggra3839Gracilaria gracilis GNS1m malegenetig00000850_pilon 2195454..2197184 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3839.t1.stop1Ggra3839.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2195454..2195456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3839.t1.CDS1Ggra3839.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2195454..2197184 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3839.t1.exon1Ggra3839.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2195454..2197184 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3839.t1.start1Ggra3839.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2197182..2197184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3839.t1Ggra3839.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2195454..2197184 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3839.t1 ID=Ggra3839.t1|Name=Ggra3839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=577bp
MTVANSHSLRSRSSSLVGSEPGTPEWNKRTAARAMLRAVDFKDEDFGKPI
ITIACTHTNATPCNAHINVLGEALQREVEKTGGKAFVFGTPVISDGETMG
TSGMRYSLVSRDLIADCIETMHEGYLADGMVTIGGCDKSIPGALMPILRN
DSIGVMLYGGSILPGNLDGVDTTVISAFEAIGAHSAGKIDDAQLGRVERN
SCPGSGSCGGMFTANTMSSIIEAMGMSVPYSAAHTAVDRQNNISKDKVGD
CVRSVEALFTCMERGITSRQICTRKAFDNGLTVCMALGGSTNAVLHCLAL
AHEAEVDLTIDDFNAIGERVPLIGDFKPFGRYTMADLEKIGGVPLVMKYL
LDNGLLHGDCMTVTGKTVAENLADVPSLPATQDIIRKLEEPYAPPGNHIV
VMRGNLAPEGAVIKLSGKELKLHRGPARVFESEEDALNAILAGKIVDNDV
VVIRQEGPRGGPGMREMLSPSAAIMGAGLGKTVALITDGRFSGGTHGIMV
GHVSPEAAVGGPIGLLKEGDIIRLEPGKKLLTVEIDDAEMELRRKSWTPY
PKERTRGVLMKYAKLVSSASEGAVTY*
back to top

spliced messenger RNA

>Ggra3839.t1 ID=Ggra3839.t1|Name=Ggra3839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000850_pilon:2195454..2197184- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGGCCAACTCTCACAGTCTGCGTTCCCGATCCTCTTCTCTGGT
TGGCAGTGAGCCAGGGACACCAGAGTGGAACAAACGCACTGCAGCCCGCG
CCATGCTGCGTGCCGTTGATTTCAAAGACGAGGATTTCGGAAAGCCAATC
ATCACAATCGCCTGTACTCACACTAATGCAACCCCGTGCAATGCCCATAT
CAACGTGCTTGGTGAAGCTCTTCAACGTGAGGTCGAGAAAACGGGTGGAA
AGGCCTTCGTGTTTGGCACCCCTGTCATTTCTGATGGAGAGACCATGGGA
ACCAGTGGCATGCGCTATTCACTTGTTTCACGAGACCTCATTGCTGACTG
CATCGAAACCATGCATGAAGGCTATCTTGCAGACGGTATGGTGACAATTG
GTGGCTGTGACAAGAGCATTCCAGGTGCACTCATGCCAATCCTCAGGAAC
GATTCCATTGGTGTCATGTTGTATGGAGGTAGCATTCTTCCGGGTAACCT
GGACGGCGTCGACACTACCGTTATTTCCGCCTTCGAAGCTATTGGGGCGC
ATTCAGCTGGAAAGATCGACGATGCACAATTAGGAAGGGTTGAGCGAAAC
TCCTGTCCGGGAAGTGGTAGCTGTGGTGGAATGTTCACTGCCAATACCAT
GTCCAGTATCATCGAAGCTATGGGAATGAGCGTTCCGTACTCGGCAGCTC
ACACGGCCGTGGATCGCCAGAATAACATCAGCAAGGATAAGGTGGGCGAC
TGCGTCCGCAGTGTTGAAGCATTATTTACTTGTATGGAGCGTGGTATTAC
AAGTAGGCAAATTTGTACGAGAAAAGCTTTTGACAATGGGCTCACTGTTT
GTATGGCTCTTGGCGGTAGTACTAATGCTGTACTGCATTGTCTTGCTCTT
GCACACGAGGCAGAAGTTGACCTCACAATTGATGACTTTAATGCTATCGG
TGAACGAGTCCCTCTCATCGGAGACTTTAAACCATTTGGAAGGTACACAA
TGGCTGATCTTGAGAAGATTGGTGGGGTTCCTTTGGTCATGAAGTATCTA
CTGGACAACGGCCTGCTGCACGGCGATTGTATGACCGTCACTGGAAAGAC
TGTAGCGGAGAATTTGGCGGACGTGCCTAGCCTGCCCGCCACTCAAGACA
TAATCAGAAAGTTGGAGGAGCCGTACGCCCCTCCTGGAAATCACATTGTA
GTGATGAGAGGAAATTTGGCACCAGAGGGAGCCGTCATTAAGCTTTCCGG
AAAGGAGTTGAAGCTGCATCGCGGGCCTGCTCGCGTGTTTGAAAGCGAAG
AAGATGCATTGAATGCGATCCTAGCCGGAAAGATCGTCGATAACGATGTG
GTCGTTATTCGCCAGGAGGGACCGCGCGGTGGACCTGGTATGAGAGAAAT
GCTCTCCCCATCTGCTGCGATAATGGGAGCCGGTCTCGGAAAGACCGTTG
CGCTTATCACTGACGGTCGCTTCTCTGGTGGTACTCATGGTATCATGGTT
GGTCATGTTTCTCCAGAGGCAGCTGTTGGGGGTCCAATTGGTCTGCTGAA
GGAGGGAGATATAATCCGCCTGGAACCGGGAAAGAAGCTGCTAACGGTTG
AGATTGATGATGCGGAAATGGAACTGAGAAGAAAATCATGGACCCCGTAT
CCTAAGGAACGTACTAGAGGAGTTCTGATGAAGTATGCCAAGCTCGTTTC
GTCTGCAAGTGAAGGTGCAGTGACTTACTAG
back to top

protein sequence of Ggra3839.t1

>Ggra3839.t1 ID=Ggra3839.t1|Name=Ggra3839.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=577bp
MTVANSHSLRSRSSSLVGSEPGTPEWNKRTAARAMLRAVDFKDEDFGKPI
ITIACTHTNATPCNAHINVLGEALQREVEKTGGKAFVFGTPVISDGETMG
TSGMRYSLVSRDLIADCIETMHEGYLADGMVTIGGCDKSIPGALMPILRN
DSIGVMLYGGSILPGNLDGVDTTVISAFEAIGAHSAGKIDDAQLGRVERN
SCPGSGSCGGMFTANTMSSIIEAMGMSVPYSAAHTAVDRQNNISKDKVGD
CVRSVEALFTCMERGITSRQICTRKAFDNGLTVCMALGGSTNAVLHCLAL
AHEAEVDLTIDDFNAIGERVPLIGDFKPFGRYTMADLEKIGGVPLVMKYL
LDNGLLHGDCMTVTGKTVAENLADVPSLPATQDIIRKLEEPYAPPGNHIV
VMRGNLAPEGAVIKLSGKELKLHRGPARVFESEEDALNAILAGKIVDNDV
VVIRQEGPRGGPGMREMLSPSAAIMGAGLGKTVALITDGRFSGGTHGIMV
GHVSPEAAVGGPIGLLKEGDIIRLEPGKKLLTVEIDDAEMELRRKSWTPY
PKERTRGVLMKYAKLVSSASEGAVTY*
back to top

mRNA from alignment at tig00000850_pilon:2195454..2197184-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3839.t1 ID=Ggra3839.t1|Name=Ggra3839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000850_pilon:2195454..2197184- (Gracilaria gracilis GNS1m male)
ATGACTGTGGCCAACTCTCACAGTCTGCGTTCCCGATCCTCTTCTCTGGT
TGGCAGTGAGCCAGGGACACCAGAGTGGAACAAACGCACTGCAGCCCGCG
CCATGCTGCGTGCCGTTGATTTCAAAGACGAGGATTTCGGAAAGCCAATC
ATCACAATCGCCTGTACTCACACTAATGCAACCCCGTGCAATGCCCATAT
CAACGTGCTTGGTGAAGCTCTTCAACGTGAGGTCGAGAAAACGGGTGGAA
AGGCCTTCGTGTTTGGCACCCCTGTCATTTCTGATGGAGAGACCATGGGA
ACCAGTGGCATGCGCTATTCACTTGTTTCACGAGACCTCATTGCTGACTG
CATCGAAACCATGCATGAAGGCTATCTTGCAGACGGTATGGTGACAATTG
GTGGCTGTGACAAGAGCATTCCAGGTGCACTCATGCCAATCCTCAGGAAC
GATTCCATTGGTGTCATGTTGTATGGAGGTAGCATTCTTCCGGGTAACCT
GGACGGCGTCGACACTACCGTTATTTCCGCCTTCGAAGCTATTGGGGCGC
ATTCAGCTGGAAAGATCGACGATGCACAATTAGGAAGGGTTGAGCGAAAC
TCCTGTCCGGGAAGTGGTAGCTGTGGTGGAATGTTCACTGCCAATACCAT
GTCCAGTATCATCGAAGCTATGGGAATGAGCGTTCCGTACTCGGCAGCTC
ACACGGCCGTGGATCGCCAGAATAACATCAGCAAGGATAAGGTGGGCGAC
TGCGTCCGCAGTGTTGAAGCATTATTTACTTGTATGGAGCGTGGTATTAC
AAGTAGGCAAATTTGTACGAGAAAAGCTTTTGACAATGGGCTCACTGTTT
GTATGGCTCTTGGCGGTAGTACTAATGCTGTACTGCATTGTCTTGCTCTT
GCACACGAGGCAGAAGTTGACCTCACAATTGATGACTTTAATGCTATCGG
TGAACGAGTCCCTCTCATCGGAGACTTTAAACCATTTGGAAGGTACACAA
TGGCTGATCTTGAGAAGATTGGTGGGGTTCCTTTGGTCATGAAGTATCTA
CTGGACAACGGCCTGCTGCACGGCGATTGTATGACCGTCACTGGAAAGAC
TGTAGCGGAGAATTTGGCGGACGTGCCTAGCCTGCCCGCCACTCAAGACA
TAATCAGAAAGTTGGAGGAGCCGTACGCCCCTCCTGGAAATCACATTGTA
GTGATGAGAGGAAATTTGGCACCAGAGGGAGCCGTCATTAAGCTTTCCGG
AAAGGAGTTGAAGCTGCATCGCGGGCCTGCTCGCGTGTTTGAAAGCGAAG
AAGATGCATTGAATGCGATCCTAGCCGGAAAGATCGTCGATAACGATGTG
GTCGTTATTCGCCAGGAGGGACCGCGCGGTGGACCTGGTATGAGAGAAAT
GCTCTCCCCATCTGCTGCGATAATGGGAGCCGGTCTCGGAAAGACCGTTG
CGCTTATCACTGACGGTCGCTTCTCTGGTGGTACTCATGGTATCATGGTT
GGTCATGTTTCTCCAGAGGCAGCTGTTGGGGGTCCAATTGGTCTGCTGAA
GGAGGGAGATATAATCCGCCTGGAACCGGGAAAGAAGCTGCTAACGGTTG
AGATTGATGATGCGGAAATGGAACTGAGAAGAAAATCATGGACCCCGTAT
CCTAAGGAACGTACTAGAGGAGTTCTGATGAAGTATGCCAAGCTCGTTTC
GTCTGCAAGTGAAGGTGCAGTGACTTACTAG
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:2195454..2197184-

>Ggra3839.t1 ID=Ggra3839.t1|Name=Ggra3839.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00000850_pilon:2195454..2197184- (Gracilaria gracilis GNS1m male)
ATGACTGTGGCCAACTCTCACAGTCTGCGTTCCCGATCCTCTTCTCTGGT
TGGCAGTGAGCCAGGGACACCAGAGTGGAACAAACGCACTGCAGCCCGCG
CCATGCTGCGTGCCGTTGATTTCAAAGACGAGGATTTCGGAAAGCCAATC
ATCACAATCGCCTGTACTCACACTAATGCAACCCCGTGCAATGCCCATAT
CAACGTGCTTGGTGAAGCTCTTCAACGTGAGGTCGAGAAAACGGGTGGAA
AGGCCTTCGTGTTTGGCACCCCTGTCATTTCTGATGGAGAGACCATGGGA
ACCAGTGGCATGCGCTATTCACTTGTTTCACGAGACCTCATTGCTGACTG
CATCGAAACCATGCATGAAGGCTATCTTGCAGACGGTATGGTGACAATTG
GTGGCTGTGACAAGAGCATTCCAGGTGCACTCATGCCAATCCTCAGGAAC
GATTCCATTGGTGTCATGTTGTATGGAGGTAGCATTCTTCCGGGTAACCT
GGACGGCGTCGACACTACCGTTATTTCCGCCTTCGAAGCTATTGGGGCGC
ATTCAGCTGGAAAGATCGACGATGCACAATTAGGAAGGGTTGAGCGAAAC
TCCTGTCCGGGAAGTGGTAGCTGTGGTGGAATGTTCACTGCCAATACCAT
GTCCAGTATCATCGAAGCTATGGGAATGAGCGTTCCGTACTCGGCAGCTC
ACACGGCCGTGGATCGCCAGAATAACATCAGCAAGGATAAGGTGGGCGAC
TGCGTCCGCAGTGTTGAAGCATTATTTACTTGTATGGAGCGTGGTATTAC
AAGTAGGCAAATTTGTACGAGAAAAGCTTTTGACAATGGGCTCACTGTTT
GTATGGCTCTTGGCGGTAGTACTAATGCTGTACTGCATTGTCTTGCTCTT
GCACACGAGGCAGAAGTTGACCTCACAATTGATGACTTTAATGCTATCGG
TGAACGAGTCCCTCTCATCGGAGACTTTAAACCATTTGGAAGGTACACAA
TGGCTGATCTTGAGAAGATTGGTGGGGTTCCTTTGGTCATGAAGTATCTA
CTGGACAACGGCCTGCTGCACGGCGATTGTATGACCGTCACTGGAAAGAC
TGTAGCGGAGAATTTGGCGGACGTGCCTAGCCTGCCCGCCACTCAAGACA
TAATCAGAAAGTTGGAGGAGCCGTACGCCCCTCCTGGAAATCACATTGTA
GTGATGAGAGGAAATTTGGCACCAGAGGGAGCCGTCATTAAGCTTTCCGG
AAAGGAGTTGAAGCTGCATCGCGGGCCTGCTCGCGTGTTTGAAAGCGAAG
AAGATGCATTGAATGCGATCCTAGCCGGAAAGATCGTCGATAACGATGTG
GTCGTTATTCGCCAGGAGGGACCGCGCGGTGGACCTGGTATGAGAGAAAT
GCTCTCCCCATCTGCTGCGATAATGGGAGCCGGTCTCGGAAAGACCGTTG
CGCTTATCACTGACGGTCGCTTCTCTGGTGGTACTCATGGTATCATGGTT
GGTCATGTTTCTCCAGAGGCAGCTGTTGGGGGTCCAATTGGTCTGCTGAA
GGAGGGAGATATAATCCGCCTGGAACCGGGAAAGAAGCTGCTAACGGTTG
AGATTGATGATGCGGAAATGGAACTGAGAAGAAAATCATGGACCCCGTAT
CCTAAGGAACGTACTAGAGGAGTTCTGATGAAGTATGCCAAGCTCGTTTC
GTCTGCAAGTGAAGGTGCAGTGACTTACTAG
back to top