Ggra3866.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3866.t1
Unique NameGgra3866.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2271896..2273543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3866Ggra3866Gracilaria gracilis GNS1m malegenetig00000850_pilon 2271896..2273543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3866.t1Ggra3866.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2271896..2273543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3866.t1.stop1Ggra3866.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2271896..2271898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3866.t1.CDS1Ggra3866.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2271896..2272488 -
Ggra3866.t1.CDS2Ggra3866.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2272604..2273543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3866.t1.exon1Ggra3866.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2271896..2272488 -
Ggra3866.t1.exon2Ggra3866.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2272604..2273543 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3866.t1.intron1Ggra3866.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2272489..2272603 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3866.t1.start1Ggra3866.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2273541..2273543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3866.t1 ID=Ggra3866.t1|Name=Ggra3866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=511bp
MAHVRGMTPRNTFLLFVFLFLVHAACPPLSNGIPSSSQCLPPLSRNPQHL
DYAHCKNEMCFLFIDEDPFIRLPELSTPKARHFRPFPCGQPGRMHPRLEG
ITFRIHAMTGSSNASCIWAGPKASCSFNQLNYFAATFAEYGYHFALSGAF
LDTNVSRCNFQPSAPQLDSAMMIVGPNILSPARSAFEQVTRPFRTSTWIV
ISVISFMFAAIGMIIAVIVANKLSPTVYILMGHRDKLRDYDSRRLASSLA
FLRGAISSFGAIAYLFYAASVVNFLFAQSNVEMSQSVSSLSVTDLAQYAV
LKDSALERVWDIQVNPEGLKYNSSDPSSFPWKRCLSGRQCIEWVFRGTND
VRFAVTYNTMGNHFIHEFADCNVLTEWTSRQPLPTFNIGWLYNSQVTDDE
RMSLNREIVGLRIGGIISDEISRTRGDSACSEETVHDIGILVVILPLAVF
VFPLGIIGLALVIWAEYQRHNIEKRQFGTSLTPVLQSVVIESSTDSSLSS
PPEEPIVEVT*
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spliced messenger RNA

>Ggra3866.t1 ID=Ggra3866.t1|Name=Ggra3866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000850_pilon:2271896..2273543- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACGTGCGTGGTATGACCCCTCGCAACACATTTTTGCTCTTCGT
GTTTCTGTTCCTCGTGCATGCAGCTTGTCCACCACTTAGCAATGGAATCC
CATCATCGTCACAATGTTTACCCCCGCTCTCACGCAATCCGCAGCACCTG
GACTACGCCCACTGCAAGAACGAAATGTGCTTTCTTTTTATTGATGAAGA
CCCTTTCATCCGACTCCCCGAGTTGTCCACTCCGAAAGCTCGTCATTTCC
GACCATTTCCATGCGGTCAACCTGGACGTATGCACCCTCGGCTCGAGGGC
ATTACTTTCAGAATTCATGCCATGACAGGATCGTCGAACGCGTCTTGCAT
TTGGGCAGGACCCAAGGCCAGCTGCTCTTTTAACCAACTGAACTATTTTG
CTGCCACTTTCGCCGAATATGGCTATCACTTCGCTCTCTCGGGTGCATTT
TTGGATACAAACGTCAGTCGATGTAATTTTCAACCTTCTGCTCCGCAACT
CGACTCCGCCATGATGATCGTTGGTCCTAACATACTCTCGCCTGCTAGAA
GTGCGTTTGAGCAAGTTACAAGACCTTTTCGAACTTCCACATGGATAGTA
ATTTCCGTTATTTCGTTCATGTTTGCTGCTATAGGAATGATCATTGCAGT
AATTGTTGCGAACAAACTCTCGCCTACTGTTTACATTTTGATGGGCCACC
GGGACAAGCTGCGAGATTATGATTCTAGACGTCTTGCATCGTCTCTTGCG
TTTCTCCGTGGAGCCATATCAAGTTTTGGAGCCATTGCTTATTTGTTCTA
TGCTGCTTCTGTTGTCAACTTCCTTTTTGCGCAAAGCAATGTGGAGATGT
CTCAGAGTGTCTCCAGTTTATCTGTCACTGATTTGGCGCAGTACGCAGTG
CTAAAGGATTCCGCTTTGGAGCGGGTGTGGGATATCCAAGTGAACCCGGA
AGGACTCAAGTACAACAGCTCTGATCCTTCCAGCTTTCCTTGGAAACGTT
GTTTATCTGGTAGGCAGTGCATTGAATGGGTGTTTCGTGGTACAAACGAT
GTCAGGTTTGCTGTGACGTATAATACGATGGGAAATCATTTCATTCATGA
GTTTGCTGATTGCAATGTTCTCACAGAGTGGACGTCAAGGCAGCCACTGC
CGACGTTCAATATTGGTTGGTTGTACAACTCTCAGGTTACGGATGACGAG
CGAATGAGCCTCAACCGGGAAATTGTCGGACTGCGGATCGGTGGTATTAT
CTCGGACGAGATTTCGCGAACTAGAGGTGATTCAGCCTGTAGTGAAGAAA
CAGTTCATGATATTGGGATATTGGTTGTGATTCTTCCGCTCGCAGTGTTT
GTTTTTCCTCTCGGTATCATCGGTCTTGCTTTAGTAATATGGGCTGAATA
CCAGCGCCACAACATTGAGAAGAGGCAATTTGGGACTAGTCTTACCCCTG
TGTTACAGTCGGTTGTCATTGAGAGTTCAACAGACTCAAGTTTGTCTAGT
CCTCCTGAAGAACCCATCGTGGAAGTTACGTAA
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protein sequence of Ggra3866.t1

>Ggra3866.t1 ID=Ggra3866.t1|Name=Ggra3866.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MAHVRGMTPRNTFLLFVFLFLVHAACPPLSNGIPSSSQCLPPLSRNPQHL
DYAHCKNEMCFLFIDEDPFIRLPELSTPKARHFRPFPCGQPGRMHPRLEG
ITFRIHAMTGSSNASCIWAGPKASCSFNQLNYFAATFAEYGYHFALSGAF
LDTNVSRCNFQPSAPQLDSAMMIVGPNILSPARSAFEQVTRPFRTSTWIV
ISVISFMFAAIGMIIAVIVANKLSPTVYILMGHRDKLRDYDSRRLASSLA
FLRGAISSFGAIAYLFYAASVVNFLFAQSNVEMSQSVSSLSVTDLAQYAV
LKDSALERVWDIQVNPEGLKYNSSDPSSFPWKRCLSGRQCIEWVFRGTND
VRFAVTYNTMGNHFIHEFADCNVLTEWTSRQPLPTFNIGWLYNSQVTDDE
RMSLNREIVGLRIGGIISDEISRTRGDSACSEETVHDIGILVVILPLAVF
VFPLGIIGLALVIWAEYQRHNIEKRQFGTSLTPVLQSVVIESSTDSSLSS
PPEEPIVEVT*
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mRNA from alignment at tig00000850_pilon:2271896..2273543-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3866.t1 ID=Ggra3866.t1|Name=Ggra3866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1648bp|location=Sequence derived from alignment at tig00000850_pilon:2271896..2273543- (Gracilaria gracilis GNS1m male)
ATGGCTCACGTGCGTGGTATGACCCCTCGCAACACATTTTTGCTCTTCGT
GTTTCTGTTCCTCGTGCATGCAGCTTGTCCACCACTTAGCAATGGAATCC
CATCATCGTCACAATGTTTACCCCCGCTCTCACGCAATCCGCAGCACCTG
GACTACGCCCACTGCAAGAACGAAATGTGCTTTCTTTTTATTGATGAAGA
CCCTTTCATCCGACTCCCCGAGTTGTCCACTCCGAAAGCTCGTCATTTCC
GACCATTTCCATGCGGTCAACCTGGACGTATGCACCCTCGGCTCGAGGGC
ATTACTTTCAGAATTCATGCCATGACAGGATCGTCGAACGCGTCTTGCAT
TTGGGCAGGACCCAAGGCCAGCTGCTCTTTTAACCAACTGAACTATTTTG
CTGCCACTTTCGCCGAATATGGCTATCACTTCGCTCTCTCGGGTGCATTT
TTGGATACAAACGTCAGTCGATGTAATTTTCAACCTTCTGCTCCGCAACT
CGACTCCGCCATGATGATCGTTGGTCCTAACATACTCTCGCCTGCTAGAA
GTGCGTTTGAGCAAGTTACAAGACCTTTTCGAACTTCCACATGGATAGTA
ATTTCCGTTATTTCGTTCATGTTTGCTGCTATAGGAATGATCATTGCAGT
AATTGTTGCGAACAAACTCTCGCCTACTGTTTACATTTTGATGGGCCACC
GGGACAAGCTGCGAGATTATGATTCTAGACGTCTTGCATCGTCTCTTGCG
TTTCTCCGTGGAGCCATATCAAGTTTTGGAGCCATTGCTTATTTGTTCTA
TGCTGCTTCTGTTGTCAACTTCCTTTTTGCGCAAAGCAATGTGGAGATGT
CTCAGAGTGTCTCCAGTTTATCTGTCACTGATTTGGCGCAGTACGCAGTG
CTAAAGGATTCCGCTTTGGAGCGGGTGTGGGATATCCAAGGTATGTTACT
TCGCACTGTGGTTTTATGTGGTAAACAGTTCTTTCCGTCCAGAAGATCAA
TCAACGAATCTAACTCTCGAAACTCCGTCTTAACTCGTTTTCCCACCTTT
GTAAGTGAACCCGGAAGGACTCAAGTACAACAGCTCTGATCCTTCCAGCT
TTCCTTGGAAACGTTGTTTATCTGGTAGGCAGTGCATTGAATGGGTGTTT
CGTGGTACAAACGATGTCAGGTTTGCTGTGACGTATAATACGATGGGAAA
TCATTTCATTCATGAGTTTGCTGATTGCAATGTTCTCACAGAGTGGACGT
CAAGGCAGCCACTGCCGACGTTCAATATTGGTTGGTTGTACAACTCTCAG
GTTACGGATGACGAGCGAATGAGCCTCAACCGGGAAATTGTCGGACTGCG
GATCGGTGGTATTATCTCGGACGAGATTTCGCGAACTAGAGGTGATTCAG
CCTGTAGTGAAGAAACAGTTCATGATATTGGGATATTGGTTGTGATTCTT
CCGCTCGCAGTGTTTGTTTTTCCTCTCGGTATCATCGGTCTTGCTTTAGT
AATATGGGCTGAATACCAGCGCCACAACATTGAGAAGAGGCAATTTGGGA
CTAGTCTTACCCCTGTGTTACAGTCGGTTGTCATTGAGAGTTCAACAGAC
TCAAGTTTGTCTAGTCCTCCTGAAGAACCCATCGTGGAAGTTACGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2271896..2273543-

>Ggra3866.t1 ID=Ggra3866.t1|Name=Ggra3866.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000850_pilon:2271896..2273543- (Gracilaria gracilis GNS1m male)
ATGGCTCACGTGCGTGGTATGACCCCTCGCAACACATTTTTGCTCTTCGT
GTTTCTGTTCCTCGTGCATGCAGCTTGTCCACCACTTAGCAATGGAATCC
CATCATCGTCACAATGTTTACCCCCGCTCTCACGCAATCCGCAGCACCTG
GACTACGCCCACTGCAAGAACGAAATGTGCTTTCTTTTTATTGATGAAGA
CCCTTTCATCCGACTCCCCGAGTTGTCCACTCCGAAAGCTCGTCATTTCC
GACCATTTCCATGCGGTCAACCTGGACGTATGCACCCTCGGCTCGAGGGC
ATTACTTTCAGAATTCATGCCATGACAGGATCGTCGAACGCGTCTTGCAT
TTGGGCAGGACCCAAGGCCAGCTGCTCTTTTAACCAACTGAACTATTTTG
CTGCCACTTTCGCCGAATATGGCTATCACTTCGCTCTCTCGGGTGCATTT
TTGGATACAAACGTCAGTCGATGTAATTTTCAACCTTCTGCTCCGCAACT
CGACTCCGCCATGATGATCGTTGGTCCTAACATACTCTCGCCTGCTAGAA
GTGCGTTTGAGCAAGTTACAAGACCTTTTCGAACTTCCACATGGATAGTA
ATTTCCGTTATTTCGTTCATGTTTGCTGCTATAGGAATGATCATTGCAGT
AATTGTTGCGAACAAACTCTCGCCTACTGTTTACATTTTGATGGGCCACC
GGGACAAGCTGCGAGATTATGATTCTAGACGTCTTGCATCGTCTCTTGCG
TTTCTCCGTGGAGCCATATCAAGTTTTGGAGCCATTGCTTATTTGTTCTA
TGCTGCTTCTGTTGTCAACTTCCTTTTTGCGCAAAGCAATGTGGAGATGT
CTCAGAGTGTCTCCAGTTTATCTGTCACTGATTTGGCGCAGTACGCAGTG
CTAAAGGATTCCGCTTTGGAGCGGGTGTGGGATATCCAAGTGAACCCGGA
AGGACTCAAGTACAACAGCTCTGATCCTTCCAGCTTTCCTTGGAAACGTT
GTTTATCTGGTAGGCAGTGCATTGAATGGGTGTTTCGTGGTACAAACGAT
GTCAGGTTTGCTGTGACGTATAATACGATGGGAAATCATTTCATTCATGA
GTTTGCTGATTGCAATGTTCTCACAGAGTGGACGTCAAGGCAGCCACTGC
CGACGTTCAATATTGGTTGGTTGTACAACTCTCAGGTTACGGATGACGAG
CGAATGAGCCTCAACCGGGAAATTGTCGGACTGCGGATCGGTGGTATTAT
CTCGGACGAGATTTCGCGAACTAGAGGTGATTCAGCCTGTAGTGAAGAAA
CAGTTCATGATATTGGGATATTGGTTGTGATTCTTCCGCTCGCAGTGTTT
GTTTTTCCTCTCGGTATCATCGGTCTTGCTTTAGTAATATGGGCTGAATA
CCAGCGCCACAACATTGAGAAGAGGCAATTTGGGACTAGTCTTACCCCTG
TGTTACAGTCGGTTGTCATTGAGAGTTCAACAGACTCAAGTTTGTCTAGT
CCTCCTGAAGAACCCATCGTGGAAGTTACGTAA
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