Ggra3597.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3597.t1
Unique NameGgra3597.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length472
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:208786..210201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX50730
Preferred nameTRYR
PFAMsPyr_redox_2,Pyr_redox_dim
Max annot lvl2759|Eukaryota
KEGG rclassRC00011,RC01003
KEGG koko:K00383,ko:K04283
KEGG ReactionR00094,R00115,R03821,R08356,R08357
KEGG Pathwayko00480,ko01100,ko04918,map00480,map01100,map04918
Evalue4.67e-203
EggNOG OGsCOG1249@1|root,KOG0405@2759|Eukaryota
EC1.8.1.12,1.8.1.7
Descriptionglutathione-disulfide reductase activity
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3597Ggra3597Gracilaria gracilis GNS1m malegenetig00000850_pilon 208786..210201 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3597.t1.start1Ggra3597.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 208786..208788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3597.t1.CDS1Ggra3597.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 208786..210201 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3597.t1.exon1Ggra3597.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 208786..210201 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3597.t1.stop1Ggra3597.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 210199..210201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3597.t1Ggra3597.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 208786..210201 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3597.t1 ID=Ggra3597.t1|Name=Ggra3597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=472bp
MSTAATQAAEQTTLAHGYQYDLFVIGAGSGGVRASRIAANHGAKVAVAEY
APLGGTCVNVGCVPKKLFVYGSHYGHDFHDATAYGWDVPKSSLDWPRLIR
NKNAEIERLNGIYGRLLDKAGVHLIQGKAKFIDSHTIEVDDRQYTADKIL
VATGGRPFVPDFEGKEHVITSNEAFYLEQLPKRAMVIGGGYIAVEFACIF
HGYGSQVVQLYRRDLFLRGFDDDVRKHLAEQMKITGVDVRFNSTVKKIVK
NSDGSLTVTTNNDEVFETDLVMYATGRVPSTEDIALDSAGVKTGSKGKIL
VDEWNKTNVEHIYAIGDVTDRICLTPVAIAEGHAFADTHYGDKRRNVDYS
DIPTAVFSTPSIGTCGLTETQAREKYGKYGVDIYKTAFRPMKHTLTKREG
EKTFMKLIVEKSTDKVVGCHMLDAAAGEVIQIVGVAMKAGATKAHFDSTM
PVHPVSAEEMVTLRTKQPDPQ*
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spliced messenger RNA

>Ggra3597.t1 ID=Ggra3597.t1|Name=Ggra3597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000850_pilon:208786..210201+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACAGCCGCAACACAAGCCGCAGAGCAAACCACTCTGGCGCACGG
GTATCAATATGATCTGTTCGTAATTGGTGCTGGTTCTGGCGGTGTCCGTG
CTTCCCGTATTGCTGCGAACCATGGCGCAAAAGTTGCAGTTGCGGAGTAT
GCGCCTTTAGGTGGTACCTGTGTTAACGTTGGATGTGTGCCGAAGAAGCT
GTTCGTTTATGGAAGCCATTACGGGCATGATTTTCATGATGCTACTGCAT
ACGGCTGGGACGTCCCAAAATCGTCCCTGGACTGGCCTAGATTGATTCGG
AACAAGAATGCTGAAATCGAGCGACTGAACGGTATCTATGGCCGGTTGTT
GGACAAGGCTGGTGTTCACCTTATTCAAGGCAAGGCAAAGTTTATTGATA
GTCACACTATTGAAGTTGACGATAGGCAATACACGGCCGATAAGATTCTT
GTCGCTACTGGTGGTCGTCCTTTTGTGCCTGACTTTGAAGGAAAAGAACA
CGTCATCACGAGTAACGAGGCATTCTACCTCGAACAGTTGCCGAAGCGCG
CTATGGTTATTGGTGGCGGATATATTGCGGTTGAGTTTGCGTGTATCTTT
CACGGGTATGGATCCCAGGTCGTTCAACTGTATCGACGCGACTTGTTTTT
GAGGGGATTTGACGATGACGTTCGGAAACATCTTGCAGAGCAGATGAAAA
TCACTGGCGTTGATGTTCGTTTCAATTCAACTGTCAAGAAGATTGTCAAG
AATAGCGACGGATCGTTAACAGTAACGACAAACAATGACGAAGTGTTTGA
GACGGATCTGGTCATGTATGCCACAGGGAGAGTTCCAAGCACAGAAGATA
TCGCTCTTGATTCCGCTGGAGTGAAGACTGGTAGCAAGGGAAAGATTCTC
GTCGATGAGTGGAACAAGACCAATGTTGAACATATTTACGCTATTGGTGA
CGTCACGGATAGGATATGTCTCACCCCGGTCGCCATTGCAGAGGGCCATG
CATTCGCGGACACGCACTATGGCGACAAGAGAAGAAACGTTGACTACAGC
GATATTCCCACTGCGGTGTTTTCGACACCAAGCATTGGAACCTGCGGTTT
AACCGAGACTCAAGCCAGGGAGAAGTACGGAAAATACGGTGTTGATATAT
ATAAGACAGCATTCCGACCTATGAAGCATACGCTCACGAAGCGTGAGGGT
GAGAAGACATTCATGAAGCTTATCGTGGAGAAAAGTACTGATAAAGTGGT
CGGATGTCACATGCTAGACGCTGCTGCCGGGGAAGTCATTCAAATTGTTG
GCGTTGCTATGAAGGCTGGTGCCACAAAAGCACATTTTGACTCTACAATG
CCTGTACATCCTGTTAGTGCGGAAGAGATGGTAACTTTGAGAACAAAGCA
ACCTGACCCACAGTAA
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protein sequence of Ggra3597.t1

>Ggra3597.t1 ID=Ggra3597.t1|Name=Ggra3597.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=472bp
MSTAATQAAEQTTLAHGYQYDLFVIGAGSGGVRASRIAANHGAKVAVAEY
APLGGTCVNVGCVPKKLFVYGSHYGHDFHDATAYGWDVPKSSLDWPRLIR
NKNAEIERLNGIYGRLLDKAGVHLIQGKAKFIDSHTIEVDDRQYTADKIL
VATGGRPFVPDFEGKEHVITSNEAFYLEQLPKRAMVIGGGYIAVEFACIF
HGYGSQVVQLYRRDLFLRGFDDDVRKHLAEQMKITGVDVRFNSTVKKIVK
NSDGSLTVTTNNDEVFETDLVMYATGRVPSTEDIALDSAGVKTGSKGKIL
VDEWNKTNVEHIYAIGDVTDRICLTPVAIAEGHAFADTHYGDKRRNVDYS
DIPTAVFSTPSIGTCGLTETQAREKYGKYGVDIYKTAFRPMKHTLTKREG
EKTFMKLIVEKSTDKVVGCHMLDAAAGEVIQIVGVAMKAGATKAHFDSTM
PVHPVSAEEMVTLRTKQPDPQ*
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mRNA from alignment at tig00000850_pilon:208786..210201+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3597.t1 ID=Ggra3597.t1|Name=Ggra3597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000850_pilon:208786..210201+ (Gracilaria gracilis GNS1m male)
ATGTCTACAGCCGCAACACAAGCCGCAGAGCAAACCACTCTGGCGCACGG
GTATCAATATGATCTGTTCGTAATTGGTGCTGGTTCTGGCGGTGTCCGTG
CTTCCCGTATTGCTGCGAACCATGGCGCAAAAGTTGCAGTTGCGGAGTAT
GCGCCTTTAGGTGGTACCTGTGTTAACGTTGGATGTGTGCCGAAGAAGCT
GTTCGTTTATGGAAGCCATTACGGGCATGATTTTCATGATGCTACTGCAT
ACGGCTGGGACGTCCCAAAATCGTCCCTGGACTGGCCTAGATTGATTCGG
AACAAGAATGCTGAAATCGAGCGACTGAACGGTATCTATGGCCGGTTGTT
GGACAAGGCTGGTGTTCACCTTATTCAAGGCAAGGCAAAGTTTATTGATA
GTCACACTATTGAAGTTGACGATAGGCAATACACGGCCGATAAGATTCTT
GTCGCTACTGGTGGTCGTCCTTTTGTGCCTGACTTTGAAGGAAAAGAACA
CGTCATCACGAGTAACGAGGCATTCTACCTCGAACAGTTGCCGAAGCGCG
CTATGGTTATTGGTGGCGGATATATTGCGGTTGAGTTTGCGTGTATCTTT
CACGGGTATGGATCCCAGGTCGTTCAACTGTATCGACGCGACTTGTTTTT
GAGGGGATTTGACGATGACGTTCGGAAACATCTTGCAGAGCAGATGAAAA
TCACTGGCGTTGATGTTCGTTTCAATTCAACTGTCAAGAAGATTGTCAAG
AATAGCGACGGATCGTTAACAGTAACGACAAACAATGACGAAGTGTTTGA
GACGGATCTGGTCATGTATGCCACAGGGAGAGTTCCAAGCACAGAAGATA
TCGCTCTTGATTCCGCTGGAGTGAAGACTGGTAGCAAGGGAAAGATTCTC
GTCGATGAGTGGAACAAGACCAATGTTGAACATATTTACGCTATTGGTGA
CGTCACGGATAGGATATGTCTCACCCCGGTCGCCATTGCAGAGGGCCATG
CATTCGCGGACACGCACTATGGCGACAAGAGAAGAAACGTTGACTACAGC
GATATTCCCACTGCGGTGTTTTCGACACCAAGCATTGGAACCTGCGGTTT
AACCGAGACTCAAGCCAGGGAGAAGTACGGAAAATACGGTGTTGATATAT
ATAAGACAGCATTCCGACCTATGAAGCATACGCTCACGAAGCGTGAGGGT
GAGAAGACATTCATGAAGCTTATCGTGGAGAAAAGTACTGATAAAGTGGT
CGGATGTCACATGCTAGACGCTGCTGCCGGGGAAGTCATTCAAATTGTTG
GCGTTGCTATGAAGGCTGGTGCCACAAAAGCACATTTTGACTCTACAATG
CCTGTACATCCTGTTAGTGCGGAAGAGATGGTAACTTTGAGAACAAAGCA
ACCTGACCCACAGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:208786..210201+

>Ggra3597.t1 ID=Ggra3597.t1|Name=Ggra3597.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000850_pilon:208786..210201+ (Gracilaria gracilis GNS1m male)
ATGTCTACAGCCGCAACACAAGCCGCAGAGCAAACCACTCTGGCGCACGG
GTATCAATATGATCTGTTCGTAATTGGTGCTGGTTCTGGCGGTGTCCGTG
CTTCCCGTATTGCTGCGAACCATGGCGCAAAAGTTGCAGTTGCGGAGTAT
GCGCCTTTAGGTGGTACCTGTGTTAACGTTGGATGTGTGCCGAAGAAGCT
GTTCGTTTATGGAAGCCATTACGGGCATGATTTTCATGATGCTACTGCAT
ACGGCTGGGACGTCCCAAAATCGTCCCTGGACTGGCCTAGATTGATTCGG
AACAAGAATGCTGAAATCGAGCGACTGAACGGTATCTATGGCCGGTTGTT
GGACAAGGCTGGTGTTCACCTTATTCAAGGCAAGGCAAAGTTTATTGATA
GTCACACTATTGAAGTTGACGATAGGCAATACACGGCCGATAAGATTCTT
GTCGCTACTGGTGGTCGTCCTTTTGTGCCTGACTTTGAAGGAAAAGAACA
CGTCATCACGAGTAACGAGGCATTCTACCTCGAACAGTTGCCGAAGCGCG
CTATGGTTATTGGTGGCGGATATATTGCGGTTGAGTTTGCGTGTATCTTT
CACGGGTATGGATCCCAGGTCGTTCAACTGTATCGACGCGACTTGTTTTT
GAGGGGATTTGACGATGACGTTCGGAAACATCTTGCAGAGCAGATGAAAA
TCACTGGCGTTGATGTTCGTTTCAATTCAACTGTCAAGAAGATTGTCAAG
AATAGCGACGGATCGTTAACAGTAACGACAAACAATGACGAAGTGTTTGA
GACGGATCTGGTCATGTATGCCACAGGGAGAGTTCCAAGCACAGAAGATA
TCGCTCTTGATTCCGCTGGAGTGAAGACTGGTAGCAAGGGAAAGATTCTC
GTCGATGAGTGGAACAAGACCAATGTTGAACATATTTACGCTATTGGTGA
CGTCACGGATAGGATATGTCTCACCCCGGTCGCCATTGCAGAGGGCCATG
CATTCGCGGACACGCACTATGGCGACAAGAGAAGAAACGTTGACTACAGC
GATATTCCCACTGCGGTGTTTTCGACACCAAGCATTGGAACCTGCGGTTT
AACCGAGACTCAAGCCAGGGAGAAGTACGGAAAATACGGTGTTGATATAT
ATAAGACAGCATTCCGACCTATGAAGCATACGCTCACGAAGCGTGAGGGT
GAGAAGACATTCATGAAGCTTATCGTGGAGAAAAGTACTGATAAAGTGGT
CGGATGTCACATGCTAGACGCTGCTGCCGGGGAAGTCATTCAAATTGTTG
GCGTTGCTATGAAGGCTGGTGCCACAAAAGCACATTTTGACTCTACAATG
CCTGTACATCCTGTTAGTGCGGAAGAGATGGTAACTTTGAGAACAAAGCA
ACCTGACCCACAGTAA
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