Ggra3805.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3805.t1
Unique NameGgra3805.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2080286..2080841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3805Ggra3805Gracilaria gracilis GNS1m malegenetig00000850_pilon 2080286..2080841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3805.t1Ggra3805.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2080286..2080841 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3805.t1.start1Ggra3805.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2080286..2080288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3805.t1.CDS1Ggra3805.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2080286..2080430 +
Ggra3805.t1.CDS2Ggra3805.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2080525..2080841 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3805.t1.exon1Ggra3805.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2080286..2080430 +
Ggra3805.t1.exon2Ggra3805.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2080525..2080841 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3805.t1.intron1Ggra3805.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2080431..2080524 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3805.t1.stop1Ggra3805.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2080839..2080841 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3805.t1 ID=Ggra3805.t1|Name=Ggra3805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=154bp
MMGFFFLENKGRTVEISIGWLRTSGNRSAIVSATFLATDITGMPSLASRI
HPQPGGVVDKHRRHAGFRFWSMYCRGVWYADYGVEGAGLWPSWGDEVVLV
AGIDEKETLGQGNTASASPAGSAPVPGSVLVSVSFKRAQVRDLLAFRAFS
IVE*
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spliced messenger RNA

>Ggra3805.t1 ID=Ggra3805.t1|Name=Ggra3805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00000850_pilon:2080286..2080841+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGCTTCTTCTTCCTCGAGAATAAAGGCCGAACTGTGGAGATCTC
CATTGGCTGGTTGAGAACTTCCGGGAATCGGAGCGCTATTGTCAGCGCGA
CTTTCCTGGCTACCGACATTACTGGGATGCCTTCCCTGGCCTCCAGAATC
CACCCGCAGCCTGGGGGCGTGGTTGACAAGCATAGAAGACATGCTGGGTT
CCGGTTCTGGTCAATGTACTGTCGCGGAGTTTGGTATGCCGATTATGGCG
TTGAAGGCGCCGGACTCTGGCCAAGCTGGGGAGACGAAGTGGTACTGGTC
GCCGGTATCGACGAGAAGGAGACGCTCGGCCAGGGCAACACTGCAAGTGC
CTCCCCAGCTGGGTCTGCCCCTGTCCCGGGCTCCGTACTAGTATCCGTTT
CGTTTAAGAGAGCTCAAGTTCGAGACTTACTTGCATTCCGAGCCTTTTCC
ATCGTGGAGTAA
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protein sequence of Ggra3805.t1

>Ggra3805.t1 ID=Ggra3805.t1|Name=Ggra3805.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=154bp
MMGFFFLENKGRTVEISIGWLRTSGNRSAIVSATFLATDITGMPSLASRI
HPQPGGVVDKHRRHAGFRFWSMYCRGVWYADYGVEGAGLWPSWGDEVVLV
AGIDEKETLGQGNTASASPAGSAPVPGSVLVSVSFKRAQVRDLLAFRAFS
IVE*
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mRNA from alignment at tig00000850_pilon:2080286..2080841+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3805.t1 ID=Ggra3805.t1|Name=Ggra3805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp|location=Sequence derived from alignment at tig00000850_pilon:2080286..2080841+ (Gracilaria gracilis GNS1m male)
ATGATGGGCTTCTTCTTCCTCGAGAATAAAGGCCGAACTGTGGAGATCTC
CATTGGCTGGTTGAGAACTTCCGGGAATCGGAGCGCTATTGTCAGCGCGA
CTTTCCTGGCTACCGACATTACTGGGATGCCTTCCCTGGCCTCCAGTGAA
TTACATCTGACGGCGAAAATAGCCTTCATCAACCCTATGGGCGTAGTTCT
GCTGGCGTTGCTGAAGCAACTTGTTTCGGACTTCAGCAGGAATCCACCCG
CAGCCTGGGGGCGTGGTTGACAAGCATAGAAGACATGCTGGGTTCCGGTT
CTGGTCAATGTACTGTCGCGGAGTTTGGTATGCCGATTATGGCGTTGAAG
GCGCCGGACTCTGGCCAAGCTGGGGAGACGAAGTGGTACTGGTCGCCGGT
ATCGACGAGAAGGAGACGCTCGGCCAGGGCAACACTGCAAGTGCCTCCCC
AGCTGGGTCTGCCCCTGTCCCGGGCTCCGTACTAGTATCCGTTTCGTTTA
AGAGAGCTCAAGTTCGAGACTTACTTGCATTCCGAGCCTTTTCCATCGTG
GAGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2080286..2080841+

>Ggra3805.t1 ID=Ggra3805.t1|Name=Ggra3805.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00000850_pilon:2080286..2080841+ (Gracilaria gracilis GNS1m male)
ATGATGGGCTTCTTCTTCCTCGAGAATAAAGGCCGAACTGTGGAGATCTC
CATTGGCTGGTTGAGAACTTCCGGGAATCGGAGCGCTATTGTCAGCGCGA
CTTTCCTGGCTACCGACATTACTGGGATGCCTTCCCTGGCCTCCAGAATC
CACCCGCAGCCTGGGGGCGTGGTTGACAAGCATAGAAGACATGCTGGGTT
CCGGTTCTGGTCAATGTACTGTCGCGGAGTTTGGTATGCCGATTATGGCG
TTGAAGGCGCCGGACTCTGGCCAAGCTGGGGAGACGAAGTGGTACTGGTC
GCCGGTATCGACGAGAAGGAGACGCTCGGCCAGGGCAACACTGCAAGTGC
CTCCCCAGCTGGGTCTGCCCCTGTCCCGGGCTCCGTACTAGTATCCGTTT
CGTTTAAGAGAGCTCAAGTTCGAGACTTACTTGCATTCCGAGCCTTTTCC
ATCGTGGAGTAA
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