Ggra3665.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3665.t1
Unique Name	Ggra3665.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	260

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:903066..907556 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3665	Ggra3665	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 903066..907556 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3665.t1	Ggra3665.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 903066..907556 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3665.t1.start1	Ggra3665.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 903066..903068 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3665.t1.CDS1	Ggra3665.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 903066..903732 +
Ggra3665.t1.CDS2	Ggra3665.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 907444..907556 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3665.t1.exon1	Ggra3665.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 903066..903732 +
Ggra3665.t1.exon2	Ggra3665.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 907444..907556 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3665.t1.intron1	Ggra3665.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000850_pilon 903733..907443 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3665.t1.stop1	Ggra3665.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 907554..907556 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:903066..907556+
coding sequence from alignment at tig00000850_pilon:903066..907556+

mRNA sequence

>Ggra3665.t1 ID=Ggra3665.t1|Name=Ggra3665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=260bp
MKRSPCRSASESTPRQPQVDTFQLLDEDLGPPISSDTSRQVTPGPSVLPE
TDDCSVELTPFTPAATNCETPHNQALQEESNISDDSVEVSSLNTRSLPAT
SISQISLPIFAFDSEGEANDELYVASSQDEYVENEQKSEEDSNYTERGSH
ISEQELRDLRVENSTRSRTLRNVISSNAEHARKIAVEDMWSSSFCDNLDT
MMDDRLDSYNSGRTVEAGENPNRNMLRVLGEVANGRCPEKGGNTGPRATE
AAESSVIAD*

spliced messenger RNA

>Ggra3665.t1 ID=Ggra3665.t1|Name=Ggra3665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000850_pilon:903066..907556+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGATCTCCGTGTCGGTCGGCGTCTGAAAGCACTCCTCGACAACC
TCAGGTGGATACATTTCAATTGCTCGATGAAGATCTTGGCCCACCCATAT
CGTCTGACACCTCGCGGCAAGTAACACCAGGTCCTTCGGTACTACCGGAA
ACAGACGATTGTAGTGTAGAATTGACACCTTTCACACCAGCGGCTACGAA
CTGTGAAACTCCTCACAATCAAGCACTACAGGAGGAAAGTAATATTTCAG
ACGACTCAGTAGAAGTCAGTTCTCTGAACACAAGGTCTTTACCTGCTACA
TCAATTTCACAGATTTCTCTACCAATTTTCGCCTTTGATTCTGAGGGGGA
AGCAAATGACGAACTATACGTTGCTTCTAGCCAAGACGAGTACGTGGAAA
ACGAACAAAAAAGTGAAGAAGACTCGAACTATACCGAACGTGGTTCGCAC
ATCTCAGAACAAGAACTCCGCGACCTACGAGTCGAAAATTCAACTCGCTC
CCGCACTCTTCGCAACGTTATATCTTCCAATGCAGAGCATGCACGCAAGA
TCGCTGTTGAAGATATGTGGTCCTCCTCGTTTTGTGATAATCTGGATACG
ATGATGGATGACCGTCTGGATTCATATAACTCTGGTCGAACTGTAGAAGC
CGGTGAAAACCCAAATCGCAATATGCTCAGGGTGCTGGGAGAAGTGGCAA
ACGGAAGATGTCCTGAAAAGGGCGGAAATACCGGACCAAGAGCTACAGAA
GCTGCAGAATCAAGTGTAATAGCTGATTGA

protein sequence of Ggra3665.t1

>Ggra3665.t1 ID=Ggra3665.t1|Name=Ggra3665.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MKRSPCRSASESTPRQPQVDTFQLLDEDLGPPISSDTSRQVTPGPSVLPE
TDDCSVELTPFTPAATNCETPHNQALQEESNISDDSVEVSSLNTRSLPAT
SISQISLPIFAFDSEGEANDELYVASSQDEYVENEQKSEEDSNYTERGSH
ISEQELRDLRVENSTRSRTLRNVISSNAEHARKIAVEDMWSSSFCDNLDT
MMDDRLDSYNSGRTVEAGENPNRNMLRVLGEVANGRCPEKGGNTGPRATE
AAESSVIAD*

mRNA from alignment at tig00000850_pilon:903066..907556+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3665.t1 ID=Ggra3665.t1|Name=Ggra3665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4491bp|location=Sequence derived from alignment at tig00000850_pilon:903066..907556+ (Gracilaria gracilis GNS1m male)
ATGAAGAGATCTCCGTGTCGGTCGGCGTCTGAAAGCACTCCTCGACAACC
TCAGGTGGATACATTTCAATTGCTCGATGAAGATCTTGGCCCACCCATAT
CGTCTGACACCTCGCGGCAAGTAACACCAGGTCCTTCGGTACTACCGGAA
ACAGACGATTGTAGTGTAGAATTGACACCTTTCACACCAGCGGCTACGAA
CTGTGAAACTCCTCACAATCAAGCACTACAGGAGGAAAGTAATATTTCAG
ACGACTCAGTAGAAGTCAGTTCTCTGAACACAAGGTCTTTACCTGCTACA
TCAATTTCACAGATTTCTCTACCAATTTTCGCCTTTGATTCTGAGGGGGA
AGCAAATGACGAACTATACGTTGCTTCTAGCCAAGACGAGTACGTGGAAA
ACGAACAAAAAAGTGAAGAAGACTCGAACTATACCGAACGTGGTTCGCAC
ATCTCAGAACAAGAACTCCGCGACCTACGAGTCGAAAATTCAACTCGCTC
CCGCACTCTTCGCAACGTTATATCTTCCAATGCAGAGCATGCACGCAAGA
TCGCTGTTGAAGATATGTGGTCCTCCTCGTTTTGTGATAATCTGGATACG
ATGATGGATGACCGTCTGGATTCATATAACTCTGGTCGAACTGTAGAAGC
CGGTGAAAACCCAAATCGTGCATATCATGGtagaactggaggtcttaaag
agtgggactacgcatctccgtttcaacagttctctgttcatattgatgga
attgacaaaatgcttgggagaaggttcatatcggagaccaattttatttt
acagaaagtgacgaaggagttgcagcgaaatacgaagacggatataatta
ctgctacagacttaacaagattgggtgtcctggacgtgtttctccctgag
catgtccttctcaaaattgtctcaaatgttaatcgagtcctcgacgtgaa
aggtaaaaaggacacttcaacatttgagttcagaggtgtccttattctct
atttgctagcaggttcatactcgttaacagtaggaaccattactacaaag
cagaacaaggacttattttttcaagtgggcatcactagtgcacgatacac
ggagatgtggtcagcactctcatgtacagccgaaagaagacaaagagtgg
aacaaatgggcgaaggatggtccaattatcctcaaagggcaaatgcactg
ataaaagagatggaagatgagttggctgctgtgaatcgccttttcttgta
catgccactcgcgaatatatttagctttgacgatgaccatcaaagactac
ggtcaagagctgttgctcaattgacgtcgatgtctcatgtcaataatccc
cagaaggccctcggtcctgttagtaacgccttgtgctcggcattgaatcc
tgtttttctcgcaagccactactcaaggcctggagagaagataactcacg
tttgggaaaggttgataagacttatgcaaggtgtttctacagccgggccc
gtgcgaccaatggtagatgcaatctttgcttcggacagaggatataactc
aaaagcaaccatcaactttattaatgatagaattggcgtcacaggtcttg
ggactcacaagagaagtctagactatccttttaaatttggcgatggcgca
ataagaaagtgacacaagggaattgttacaagtgaacaaggttgccgggc
tatttatagtgcacgtcgcaagccaaataccgtatctggaaggtctgtag
aggccatcgtttaccgtaaaagtttggaaggccgcgttgcagctttgtat
cataacaatgatcgattgttttcagctaacagatttacattggttccaaa
ggctggctacgaatctacaaaaactgcgatagagagagaggtctttcata
tggttttcgatGATTCTGTTTTACAAACAGCAGAACCCAGTAATCCCGAT
TATGATGTAATGCATTCAATGGCAAGGTTGACCGTTCTACAGGTGTTATC
CAATATTGATGAAGTTACGTTGCTTCAATCGGAAGATCCAAAGTGGTTTC
TTGGGAGGGCTTTCCCGTTTACATCGCGTACATCACAGGCCTTTCTGCGT
GCCTTGTGCGACGACTATGAGAACAGTGCAGAAGGATTGTCATATTTGGT
GAGTGGCAAGCAGGTTGACCACAGTTATGTTACGTTTCCAAACAACGAAG
ACGAAACCAAGCACAACTTGCTCTCTAAGCTGATACTACTCTGCCATTCT
TCGAATTTTGAAACGAAAACTGCACTCTGTTCCGAAGAACAGGAAGAACG
GGCTAACGCAATTATGTCCGCAACTGTCGAAAACCTCCAGAATAAGACAA
AGAATGAAATTATTTTGCTCCTTAGCTCGGTAGGACAGAGGCAATCCCAA
GCACTTCGTAAGTCACAACCAATCGAGAAAGTTTTACATCTCAGATCAGA
ATTACAAGCTGGAAGccgagcggaaatctgtgatacaggttggatattga
tatgatatctctgcaggacgtaggattagaatgaaacttttatcgtacag
atatgaaagttattttgaaaggatacagttccgataacttttgatatatt
ccagaagtggaactgatatatatgtgatatatctttggtactatttctta
catttccgataaaagtgcggtatattctgaaatttgtcatgtcagatctc
cctcaaaattataccctaaatacatcagatccatatcaagacctttcgtg
agactcacccaaatatgatatctaattcaacaatatactaaaaacatatc
tgaattgtatcataaccttacaagttctgcttcaaatatatccaactcat
atcacatgtgtatgtcagatttccactgggAAAGGCTTGAGCTGACGAAC
TCCGTTTCGCGGAATCTAACGCCATCCCATGAAAAACAGACAAAGAAGAG
AAATCTACTGGAACGTGTTTACAAAGCCTCGCTGAAATATTGGGTTATGA
AGTCTCTTGTGAGTACCCCAGGAATGAAAGAAGGTAGCTTTAACGAGTCT
CAGGTTTTGAAGGCTCTGCCGTCATTCTTTGAATCCAACGCGGTGGTTAC
TGGGAATTGATTACATTCAAGAGAGGGAAACGCTCTGGATGAAAAGTATA
AGGTGTAGTACATTCGAACAACGGGGCTGGTTTCGTCTCGTAGAGATCCT
ATGGTTGCTGATAGCCCCGATGCCATTTTCTGCTTTACCGACAACGACGG
AATACAAAACGTCTGCGCTGTTGAGATCAAAACCATGACTTCGTTGAACA
CTCTTGATGCATCGAAACAGCAAAAATGCGACTACTCTCCAATATCTTGC
CTCATGAATGTTGGTCAAAATGAAGAATCGATCAAGCCATTTCACGAGCT
TGTACCGTCAATGGAGTACAGAATTCAGTGCTTGCATCATGCTGTTGCCT
TGAATCTGAAACATGTTATGTTTGTCCAAGCAAAAGGCCGTAACTTGGGA
GTCGGTGAAGTCATTTATGTCACTATTGTTGACTTCCATCACACAATGAC
GTCAATGTACAGCTACTTGTTCGCAGCGATTCGAGTGGGAGCATTTGCat
ggattggaaaggatgcatcaaacattccaagtgcgtatgatgatcttctg
cagagctcccacgcatccgatttgaattcgtacgcttcgtattatggttt
gagccaggattatcgttctctcgcccgagggacgggaacgcttccacctg
cgcaaatgattcgccctacggcttttgtttattagaactacttgaaaagc
ggcgttgaggaattcaaaagagcgatgacgaacttgagttacacaaatgt
tggtgagtatctgattgtcagcattatcgggcgccttctatgcgcacagg
taagcaatgcggCTCTGGTACATTGGTTATCTTCGGCAAGGCAAAAAGGA
AAACTTCCTACGCAGTATGATAGTCCCCGTTCAACAGGATAACGCAAGAT
ACGGAAGAATGTCTCAAAATGCTCTTGGTCCGCTGATTATGCGCGACAGC
TTGCAAAAGAGTACGTTACTGTCATCGGAGCGCGCACCAAGATTGCAAGC
TGTGCAAGTAGCAATGGAAAGAACCTCACATCATCAGGTGTTACCTTTGT
GCCTGCGATTGTGGAACCGTTGTATCGCCCCGATATTGCAATGAAGTACA
CTCGACCAGACAACAAGATTAGAAGACTAGGAAGCCGAGATCGGCATACT
AAGGTCAATGGCAGGCACACATACTGCTCTCTCTCTGCTCATATAGTCGT
ACAATCAACAAGAATGGGAAGAAACATGGAAAGAAAGGCGGTGCAAGACA
GAGGCAGTGGTGTATCGTTTGCCGGCAGGCAATATGCTCAGGGTGCTGGG
AGAAGTGGCAAACGGAAGATGTCCTGAAAAGGGCGGAAATACCGGACCAA
GAGCTACAGAAGCTGCAGAATCAAGTGTAATAGCTGATTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:903066..907556+

>Ggra3665.t1 ID=Ggra3665.t1|Name=Ggra3665.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00000850_pilon:903066..907556+ (Gracilaria gracilis GNS1m male)
ATGAAGAGATCTCCGTGTCGGTCGGCGTCTGAAAGCACTCCTCGACAACC
TCAGGTGGATACATTTCAATTGCTCGATGAAGATCTTGGCCCACCCATAT
CGTCTGACACCTCGCGGCAAGTAACACCAGGTCCTTCGGTACTACCGGAA
ACAGACGATTGTAGTGTAGAATTGACACCTTTCACACCAGCGGCTACGAA
CTGTGAAACTCCTCACAATCAAGCACTACAGGAGGAAAGTAATATTTCAG
ACGACTCAGTAGAAGTCAGTTCTCTGAACACAAGGTCTTTACCTGCTACA
TCAATTTCACAGATTTCTCTACCAATTTTCGCCTTTGATTCTGAGGGGGA
AGCAAATGACGAACTATACGTTGCTTCTAGCCAAGACGAGTACGTGGAAA
ACGAACAAAAAAGTGAAGAAGACTCGAACTATACCGAACGTGGTTCGCAC
ATCTCAGAACAAGAACTCCGCGACCTACGAGTCGAAAATTCAACTCGCTC
CCGCACTCTTCGCAACGTTATATCTTCCAATGCAGAGCATGCACGCAAGA
TCGCTGTTGAAGATATGTGGTCCTCCTCGTTTTGTGATAATCTGGATACG
ATGATGGATGACCGTCTGGATTCATATAACTCTGGTCGAACTGTAGAAGC
CGGTGAAAACCCAAATCGCAATATGCTCAGGGTGCTGGGAGAAGTGGCAA
ACGGAAGATGTCCTGAAAAGGGCGGAAATACCGGACCAAGAGCTACAGAA
GCTGCAGAATCAAGTGTAATAGCTGATTGA