Ggra3833.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3833.t1
Unique Name	Ggra3833.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	301

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:2182032..2182934 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008617791.1
PFAMs	zf-CHY,zf-RING_2,zinc_ribbon_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19619
GOs	GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	4.73e-80
EggNOG OGs	KOG1940@1\|root,KOG1940@2759\|Eukaryota
Description	zinc ion binding
COG category	S
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3833	Ggra3833	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 2182032..2182934 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3833.t1.start1	Ggra3833.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 2182032..2182034 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3833.t1.CDS1	Ggra3833.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 2182032..2182934 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3833.t1.exon1	Ggra3833.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 2182032..2182934 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3833.t1.stop1	Ggra3833.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 2182932..2182934 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3833.t1	Ggra3833.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 2182032..2182934 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:2182032..2182934+
coding sequence from alignment at tig00000850_pilon:2182032..2182934+

mRNA sequence

>Ggra3833.t1 ID=Ggra3833.t1|Name=Ggra3833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=301bp
MDHEMVRFDTKRVRCMLCDCEQTVSDKCVQCGVQFARYFCAICKFYDDTP
GKDIYHCHKCKICRVGKGIGHDNFHCDRCDACISIELSKGHHCIKKSLDA
NCPICGSYLFTSTRPVVFMRCGHTMHAHCFDDYTVENFRCPLCQKALTNM
SSYYARIDEMLKREVMPPEHRNKFSEILCHDCNQRSTTTFHFEHHKCQGE
DCGSYNTRVLRTFRAQGGGEGVEASASASSWQRDALSATESEGPCGGSAS
GAGASASGGAASGAASRMDCEARGCDDEELCAEDGRNSSGESLRMDDVQG
*

spliced messenger RNA

>Ggra3833.t1 ID=Ggra3833.t1|Name=Ggra3833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000850_pilon:2182032..2182934+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCATGAGATGGTGCGCTTCGACACCAAGCGCGTGCGTTGCATGCT
CTGTGATTGCGAGCAGACCGTGTCCGACAAGTGCGTTCAGTGTGGCGTGC
AGTTTGCGCGCTACTTTTGTGCGATATGCAAGTTTTATGACGATACACCT
GGCAAGGATATATACCACTGTCACAAGTGCAAGATTTGTCGCGTCGGCAA
GGGAATTGGACATGATAACTTTCATTGCGACCGCTGTGATGCCTGTATAT
CCATTGAACTTTCAAAAGGTCACCACTGTATAAAGAAGTCCTTGGACGCG
AACTGTCCTATATGCGGCTCGTATCTGTTCACTTCTACGCGCCCCGTTGT
CTTCATGCGATGTGGCCATACTATGCACGCACATTGCTTTGATGACTACA
CGGTTGAAAACTTTCGGTGTCCGCTGTGTCAGAAGGCGTTGACCAACATG
TCCTCATACTATGCCAGAATTGACGAGATGCTCAAACGCGAAGTTATGCC
TCCTGAACACCGCAACAAGTTTTCGGAGATTCTGTGTCATGATTGCAACC
AACGCTCTACGACTACATTTCATTTTGAACACCACAAGTGCCAAGGTGAA
GACTGTGGTAGTTATAATACACGGGTGTTGCGGACTTTTCGAGCGCAGGG
CGGAGGTGAGGGTGTGGAGGCGTCTGCGTCTGCGTCTTCATGGCAACGCG
ATGCACTGAGTGCAACAGAGAGCGAAGGACCGTGTGGCGGCAGCGCCAGC
GGCGCCGGTGCTAGCGCGAGCGGTGGCGCTGCTTCTGGTGCGGCGTCTCG
CATGGACTGCGAGGCACGTGGTTGTGATGACGAGGAACTGTGCGCAGAGG
ATGGGCGAAATAGCAGCGGCGAGAGTCTGCGCATGGACGACGTTCAAGGA
TAG

protein sequence of Ggra3833.t1

>Ggra3833.t1 ID=Ggra3833.t1|Name=Ggra3833.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=301bp
MDHEMVRFDTKRVRCMLCDCEQTVSDKCVQCGVQFARYFCAICKFYDDTP
GKDIYHCHKCKICRVGKGIGHDNFHCDRCDACISIELSKGHHCIKKSLDA
NCPICGSYLFTSTRPVVFMRCGHTMHAHCFDDYTVENFRCPLCQKALTNM
SSYYARIDEMLKREVMPPEHRNKFSEILCHDCNQRSTTTFHFEHHKCQGE
DCGSYNTRVLRTFRAQGGGEGVEASASASSWQRDALSATESEGPCGGSAS
GAGASASGGAASGAASRMDCEARGCDDEELCAEDGRNSSGESLRMDDVQG
*

mRNA from alignment at tig00000850_pilon:2182032..2182934+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3833.t1 ID=Ggra3833.t1|Name=Ggra3833.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000850_pilon:2182032..2182934+ (Gracilaria gracilis GNS1m male)
ATGGACCATGAGATGGTGCGCTTCGACACCAAGCGCGTGCGTTGCATGCT
CTGTGATTGCGAGCAGACCGTGTCCGACAAGTGCGTTCAGTGTGGCGTGC
AGTTTGCGCGCTACTTTTGTGCGATATGCAAGTTTTATGACGATACACCT
GGCAAGGATATATACCACTGTCACAAGTGCAAGATTTGTCGCGTCGGCAA
GGGAATTGGACATGATAACTTTCATTGCGACCGCTGTGATGCCTGTATAT
CCATTGAACTTTCAAAAGGTCACCACTGTATAAAGAAGTCCTTGGACGCG
AACTGTCCTATATGCGGCTCGTATCTGTTCACTTCTACGCGCCCCGTTGT
CTTCATGCGATGTGGCCATACTATGCACGCACATTGCTTTGATGACTACA
CGGTTGAAAACTTTCGGTGTCCGCTGTGTCAGAAGGCGTTGACCAACATG
TCCTCATACTATGCCAGAATTGACGAGATGCTCAAACGCGAAGTTATGCC
TCCTGAACACCGCAACAAGTTTTCGGAGATTCTGTGTCATGATTGCAACC
AACGCTCTACGACTACATTTCATTTTGAACACCACAAGTGCCAAGGTGAA
GACTGTGGTAGTTATAATACACGGGTGTTGCGGACTTTTCGAGCGCAGGG
CGGAGGTGAGGGTGTGGAGGCGTCTGCGTCTGCGTCTTCATGGCAACGCG
ATGCACTGAGTGCAACAGAGAGCGAAGGACCGTGTGGCGGCAGCGCCAGC
GGCGCCGGTGCTAGCGCGAGCGGTGGCGCTGCTTCTGGTGCGGCGTCTCG
CATGGACTGCGAGGCACGTGGTTGTGATGACGAGGAACTGTGCGCAGAGG
ATGGGCGAAATAGCAGCGGCGAGAGTCTGCGCATGGACGACGTTCAAGGA
TAG

Coding sequence (CDS) from alignment at tig00000850_pilon:2182032..2182934+

>Ggra3833.t1 ID=Ggra3833.t1|Name=Ggra3833.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=903bp|location=Sequence derived from alignment at tig00000850_pilon:2182032..2182934+ (Gracilaria gracilis GNS1m male)
ATGGACCATGAGATGGTGCGCTTCGACACCAAGCGCGTGCGTTGCATGCT
CTGTGATTGCGAGCAGACCGTGTCCGACAAGTGCGTTCAGTGTGGCGTGC
AGTTTGCGCGCTACTTTTGTGCGATATGCAAGTTTTATGACGATACACCT
GGCAAGGATATATACCACTGTCACAAGTGCAAGATTTGTCGCGTCGGCAA
GGGAATTGGACATGATAACTTTCATTGCGACCGCTGTGATGCCTGTATAT
CCATTGAACTTTCAAAAGGTCACCACTGTATAAAGAAGTCCTTGGACGCG
AACTGTCCTATATGCGGCTCGTATCTGTTCACTTCTACGCGCCCCGTTGT
CTTCATGCGATGTGGCCATACTATGCACGCACATTGCTTTGATGACTACA
CGGTTGAAAACTTTCGGTGTCCGCTGTGTCAGAAGGCGTTGACCAACATG
TCCTCATACTATGCCAGAATTGACGAGATGCTCAAACGCGAAGTTATGCC
TCCTGAACACCGCAACAAGTTTTCGGAGATTCTGTGTCATGATTGCAACC
AACGCTCTACGACTACATTTCATTTTGAACACCACAAGTGCCAAGGTGAA
GACTGTGGTAGTTATAATACACGGGTGTTGCGGACTTTTCGAGCGCAGGG
CGGAGGTGAGGGTGTGGAGGCGTCTGCGTCTGCGTCTTCATGGCAACGCG
ATGCACTGAGTGCAACAGAGAGCGAAGGACCGTGTGGCGGCAGCGCCAGC
GGCGCCGGTGCTAGCGCGAGCGGTGGCGCTGCTTCTGGTGCGGCGTCTCG
CATGGACTGCGAGGCACGTGGTTGTGATGACGAGGAACTGTGCGCAGAGG
ATGGGCGAAATAGCAGCGGCGAGAGTCTGCGCATGGACGACGTTCAAGGA
TAG