Ggra3624.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3624.t1
Unique NameGgra3624.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:336500..337459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009366128.1
PFAMsADK,DUF1995
Max annot lvl35493|Streptophyta
KEGG rclassRC00002
KEGG koko:K00939
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
GOsGO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055035,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Evalue2.05e-21
EggNOG OGsCOG0563@1|root,KOG3078@2759|Eukaryota,37HGK@33090|Viridiplantae,3GDCM@35493|Streptophyta,4JIXU@91835|fabids
EC2.7.4.3
DescriptionBelongs to the adenylate kinase family
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3624Ggra3624Gracilaria gracilis GNS1m malegenetig00000850_pilon 336500..337459 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3624.t1.stop1Ggra3624.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 336500..336502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3624.t1.CDS1Ggra3624.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 336500..337459 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3624.t1.exon1Ggra3624.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 336500..337459 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3624.t1.start1Ggra3624.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 337457..337459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3624.t1Ggra3624.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 336500..337459 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3624.t1 ID=Ggra3624.t1|Name=Ggra3624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MATPMDRATRQQYLHFAGVAFESYLQSYLSNPTDVSRLSQVTLLLPELNP
TLDVYDRRFLLQLTWALLRVTSSLELRACVLVQGARRFGAMPLSVAGLLR
NFDADLELSRAEWPEKAVRSGELEDLKAIEEDVDIVLVLSPTNAVSIPTV
ESVANLVEYLKGKPVCLINPRLEEVPSHSGVMQVQGRADRLRLLGSFEDV
FYMRLLFDAGKNFPLRGILYRAHPGQWQAWFSPSYDDYVLAMEDERKPEF
SAVSDAFRNTMYRLQKERVAESGDGTSIEQLLLSPPAIVVFVMAVAFAIY
KGGGDSLPALWHSLLGSIP*
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spliced messenger RNA

>Ggra3624.t1 ID=Ggra3624.t1|Name=Ggra3624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000850_pilon:336500..337459- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGCCAATGGACAGAGCCACACGCCAGCAGTATCTGCACTTCGC
AGGTGTCGCTTTTGAGTCCTACCTGCAGTCGTACCTGAGCAATCCAACCG
ACGTATCTCGTCTTTCGCAGGTGACCCTCTTGCTACCAGAACTTAACCCC
ACACTTGATGTATATGATCGTCGCTTCCTTCTGCAGCTCACGTGGGCGCT
GTTAAGAGTTACGTCATCGCTTGAACTGCGAGCTTGTGTTCTTGTTCAAG
GCGCTCGTCGTTTTGGAGCAATGCCACTCTCTGTAGCAGGTCTGCTTCGA
AACTTTGACGCCGATCTGGAGCTTTCTCGTGCGGAATGGCCAGAGAAAGC
AGTCAGATCGGGAGAGTTGGAAGACTTGAAAGCCATCGAGGAAGATGTGG
ACATAGTCCTTGTTCTCTCTCCTACCAATGCCGTGTCTATCCCAACTGTC
GAGAGCGTTGCAAACCTTGTTGAGTACCTAAAGGGAAAGCCAGTCTGTCT
TATTAATCCTCGTCTTGAAGAAGTACCGAGTCATAGCGGAGTCATGCAGG
TTCAAGGTCGAGCTGATAGACTGCGACTTTTGGGTAGTTTCGAGGACGTC
TTTTATATGCGTCTGCTCTTCGATGCTGGCAAGAACTTTCCTTTGCGCGG
CATACTATATAGAGCTCATCCTGGTCAATGGCAGGCATGGTTCAGTCCAT
CGTACGACGACTATGTGCTCGCCATGGAGGACGAAAGAAAGCCAGAGTTT
AGTGCCGTGAGTGATGCTTTCCGTAACACCATGTATCGACTACAGAAGGA
AAGAGTTGCAGAGAGTGGAGATGGTACTTCTATTGAGCAGCTTCTTCTTT
CACCTCCAGCGATTGTCGTGTTTGTCATGGCAGTTGCCTTCGCAATATAC
AAAGGTGGCGGGGACAGTCTACCAGCGTTGTGGCATTCACTACTAGGCTC
AATTCCATGA
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protein sequence of Ggra3624.t1

>Ggra3624.t1 ID=Ggra3624.t1|Name=Ggra3624.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MATPMDRATRQQYLHFAGVAFESYLQSYLSNPTDVSRLSQVTLLLPELNP
TLDVYDRRFLLQLTWALLRVTSSLELRACVLVQGARRFGAMPLSVAGLLR
NFDADLELSRAEWPEKAVRSGELEDLKAIEEDVDIVLVLSPTNAVSIPTV
ESVANLVEYLKGKPVCLINPRLEEVPSHSGVMQVQGRADRLRLLGSFEDV
FYMRLLFDAGKNFPLRGILYRAHPGQWQAWFSPSYDDYVLAMEDERKPEF
SAVSDAFRNTMYRLQKERVAESGDGTSIEQLLLSPPAIVVFVMAVAFAIY
KGGGDSLPALWHSLLGSIP*
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mRNA from alignment at tig00000850_pilon:336500..337459-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3624.t1 ID=Ggra3624.t1|Name=Ggra3624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000850_pilon:336500..337459- (Gracilaria gracilis GNS1m male)
ATGGCCACGCCAATGGACAGAGCCACACGCCAGCAGTATCTGCACTTCGC
AGGTGTCGCTTTTGAGTCCTACCTGCAGTCGTACCTGAGCAATCCAACCG
ACGTATCTCGTCTTTCGCAGGTGACCCTCTTGCTACCAGAACTTAACCCC
ACACTTGATGTATATGATCGTCGCTTCCTTCTGCAGCTCACGTGGGCGCT
GTTAAGAGTTACGTCATCGCTTGAACTGCGAGCTTGTGTTCTTGTTCAAG
GCGCTCGTCGTTTTGGAGCAATGCCACTCTCTGTAGCAGGTCTGCTTCGA
AACTTTGACGCCGATCTGGAGCTTTCTCGTGCGGAATGGCCAGAGAAAGC
AGTCAGATCGGGAGAGTTGGAAGACTTGAAAGCCATCGAGGAAGATGTGG
ACATAGTCCTTGTTCTCTCTCCTACCAATGCCGTGTCTATCCCAACTGTC
GAGAGCGTTGCAAACCTTGTTGAGTACCTAAAGGGAAAGCCAGTCTGTCT
TATTAATCCTCGTCTTGAAGAAGTACCGAGTCATAGCGGAGTCATGCAGG
TTCAAGGTCGAGCTGATAGACTGCGACTTTTGGGTAGTTTCGAGGACGTC
TTTTATATGCGTCTGCTCTTCGATGCTGGCAAGAACTTTCCTTTGCGCGG
CATACTATATAGAGCTCATCCTGGTCAATGGCAGGCATGGTTCAGTCCAT
CGTACGACGACTATGTGCTCGCCATGGAGGACGAAAGAAAGCCAGAGTTT
AGTGCCGTGAGTGATGCTTTCCGTAACACCATGTATCGACTACAGAAGGA
AAGAGTTGCAGAGAGTGGAGATGGTACTTCTATTGAGCAGCTTCTTCTTT
CACCTCCAGCGATTGTCGTGTTTGTCATGGCAGTTGCCTTCGCAATATAC
AAAGGTGGCGGGGACAGTCTACCAGCGTTGTGGCATTCACTACTAGGCTC
AATTCCATGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:336500..337459-

>Ggra3624.t1 ID=Ggra3624.t1|Name=Ggra3624.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000850_pilon:336500..337459- (Gracilaria gracilis GNS1m male)
ATGGCCACGCCAATGGACAGAGCCACACGCCAGCAGTATCTGCACTTCGC
AGGTGTCGCTTTTGAGTCCTACCTGCAGTCGTACCTGAGCAATCCAACCG
ACGTATCTCGTCTTTCGCAGGTGACCCTCTTGCTACCAGAACTTAACCCC
ACACTTGATGTATATGATCGTCGCTTCCTTCTGCAGCTCACGTGGGCGCT
GTTAAGAGTTACGTCATCGCTTGAACTGCGAGCTTGTGTTCTTGTTCAAG
GCGCTCGTCGTTTTGGAGCAATGCCACTCTCTGTAGCAGGTCTGCTTCGA
AACTTTGACGCCGATCTGGAGCTTTCTCGTGCGGAATGGCCAGAGAAAGC
AGTCAGATCGGGAGAGTTGGAAGACTTGAAAGCCATCGAGGAAGATGTGG
ACATAGTCCTTGTTCTCTCTCCTACCAATGCCGTGTCTATCCCAACTGTC
GAGAGCGTTGCAAACCTTGTTGAGTACCTAAAGGGAAAGCCAGTCTGTCT
TATTAATCCTCGTCTTGAAGAAGTACCGAGTCATAGCGGAGTCATGCAGG
TTCAAGGTCGAGCTGATAGACTGCGACTTTTGGGTAGTTTCGAGGACGTC
TTTTATATGCGTCTGCTCTTCGATGCTGGCAAGAACTTTCCTTTGCGCGG
CATACTATATAGAGCTCATCCTGGTCAATGGCAGGCATGGTTCAGTCCAT
CGTACGACGACTATGTGCTCGCCATGGAGGACGAAAGAAAGCCAGAGTTT
AGTGCCGTGAGTGATGCTTTCCGTAACACCATGTATCGACTACAGAAGGA
AAGAGTTGCAGAGAGTGGAGATGGTACTTCTATTGAGCAGCTTCTTCTTT
CACCTCCAGCGATTGTCGTGTTTGTCATGGCAGTTGCCTTCGCAATATAC
AAAGGTGGCGGGGACAGTCTACCAGCGTTGTGGCATTCACTACTAGGCTC
AATTCCATGA
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