Ggra3617.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3617.t1
Unique NameGgra3617.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:323109..323702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708666.1
PFAMsCBS
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
Evalue3.55e-45
EggNOG OGsCOG0517@1|root,2QQ7J@2759|Eukaryota
DescriptionDomain in cystathionine beta-synthase and other proteins.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3617Ggra3617Gracilaria gracilis GNS1m malegenetig00000850_pilon 323109..323702 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3617.t1.start1Ggra3617.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 323109..323111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3617.t1.CDS1Ggra3617.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 323109..323702 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3617.t1.exon1Ggra3617.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 323109..323702 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3617.t1.stop1Ggra3617.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 323700..323702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3617.t1Ggra3617.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 323109..323702 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3617.t1 ID=Ggra3617.t1|Name=Ggra3617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MALLRRSATLFRALAYQNLRPLTSTPTSAPSSSPESTDDPERSHAERSLG
TVRDVLKTKGEKFFYTFGDALVYDAVKEMVKHNIGSLIIVEGATKKPVGI
VTETDYLNKVIVRGRSSKSTLVRDIMSTKEFTYVNPDATLTECMELMTVR
RIRHIPVVEAGTNNLMGMVSIGDIVSELVAAHKRDAEHMRSFISGSY*
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spliced messenger RNA

>Ggra3617.t1 ID=Ggra3617.t1|Name=Ggra3617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000850_pilon:323109..323702+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTCTTCGTCGCTCCGCCACGCTGTTCCGCGCGCTCGCGTATCA
AAACCTCCGTCCGCTCACGTCGACGCCGACCTCAGCGCCGTCGTCTTCGC
CCGAATCCACGGATGATCCAGAGCGTTCACACGCAGAGCGTTCACTCGGG
ACGGTACGCGACGTGCTGAAAACAAAGGGCGAGAAGTTCTTCTACACGTT
TGGCGACGCGTTGGTATACGATGCCGTCAAGGAGATGGTCAAGCACAACA
TTGGCTCACTCATCATAGTGGAGGGCGCCACCAAGAAGCCGGTGGGCATC
GTGACGGAGACCGATTACTTGAACAAGGTGATTGTGAGGGGACGTTCCAG
CAAGTCCACGCTGGTGCGAGATATCATGAGTACGAAGGAGTTCACGTATG
TGAACCCGGACGCCACGCTGACGGAGTGCATGGAACTCATGACCGTAAGA
CGCATTCGACATATCCCTGTCGTAGAGGCTGGCACCAACAACCTGATGGG
TATGGTGTCCATCGGTGATATCGTCAGTGAGTTGGTGGCCGCCCACAAGA
GAGACGCCGAACACATGAGGTCCTTTATCTCCGGTTCGTATTAG
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protein sequence of Ggra3617.t1

>Ggra3617.t1 ID=Ggra3617.t1|Name=Ggra3617.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MALLRRSATLFRALAYQNLRPLTSTPTSAPSSSPESTDDPERSHAERSLG
TVRDVLKTKGEKFFYTFGDALVYDAVKEMVKHNIGSLIIVEGATKKPVGI
VTETDYLNKVIVRGRSSKSTLVRDIMSTKEFTYVNPDATLTECMELMTVR
RIRHIPVVEAGTNNLMGMVSIGDIVSELVAAHKRDAEHMRSFISGSY*
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mRNA from alignment at tig00000850_pilon:323109..323702+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3617.t1 ID=Ggra3617.t1|Name=Ggra3617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000850_pilon:323109..323702+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTCTTCGTCGCTCCGCCACGCTGTTCCGCGCGCTCGCGTATCA
AAACCTCCGTCCGCTCACGTCGACGCCGACCTCAGCGCCGTCGTCTTCGC
CCGAATCCACGGATGATCCAGAGCGTTCACACGCAGAGCGTTCACTCGGG
ACGGTACGCGACGTGCTGAAAACAAAGGGCGAGAAGTTCTTCTACACGTT
TGGCGACGCGTTGGTATACGATGCCGTCAAGGAGATGGTCAAGCACAACA
TTGGCTCACTCATCATAGTGGAGGGCGCCACCAAGAAGCCGGTGGGCATC
GTGACGGAGACCGATTACTTGAACAAGGTGATTGTGAGGGGACGTTCCAG
CAAGTCCACGCTGGTGCGAGATATCATGAGTACGAAGGAGTTCACGTATG
TGAACCCGGACGCCACGCTGACGGAGTGCATGGAACTCATGACCGTAAGA
CGCATTCGACATATCCCTGTCGTAGAGGCTGGCACCAACAACCTGATGGG
TATGGTGTCCATCGGTGATATCGTCAGTGAGTTGGTGGCCGCCCACAAGA
GAGACGCCGAACACATGAGGTCCTTTATCTCCGGTTCGTATTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:323109..323702+

>Ggra3617.t1 ID=Ggra3617.t1|Name=Ggra3617.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000850_pilon:323109..323702+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTCTTCGTCGCTCCGCCACGCTGTTCCGCGCGCTCGCGTATCA
AAACCTCCGTCCGCTCACGTCGACGCCGACCTCAGCGCCGTCGTCTTCGC
CCGAATCCACGGATGATCCAGAGCGTTCACACGCAGAGCGTTCACTCGGG
ACGGTACGCGACGTGCTGAAAACAAAGGGCGAGAAGTTCTTCTACACGTT
TGGCGACGCGTTGGTATACGATGCCGTCAAGGAGATGGTCAAGCACAACA
TTGGCTCACTCATCATAGTGGAGGGCGCCACCAAGAAGCCGGTGGGCATC
GTGACGGAGACCGATTACTTGAACAAGGTGATTGTGAGGGGACGTTCCAG
CAAGTCCACGCTGGTGCGAGATATCATGAGTACGAAGGAGTTCACGTATG
TGAACCCGGACGCCACGCTGACGGAGTGCATGGAACTCATGACCGTAAGA
CGCATTCGACATATCCCTGTCGTAGAGGCTGGCACCAACAACCTGATGGG
TATGGTGTCCATCGGTGATATCGTCAGTGAGTTGGTGGCCGCCCACAAGA
GAGACGCCGAACACATGAGGTCCTTTATCTCCGGTTCGTATTAG
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