Ggra3668.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3668.t1
Unique Name	Ggra3668.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	736

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1038814..1041021 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	667121.ET1_13_00950
Preferred name	bcsA
PFAMs	Cellulose_synt,Glyco_hydro_17,Glyco_tranf_2_3,Glycos_transf_2,PilZ
Max annot lvl	1236\|Gammaproteobacteria
KEGG rclass	RC00005
KEGG ko	ko:K00694
KEGG TC	4.D.3.1.2,4.D.3.1.5,4.D.3.1.6
KEGG Reaction	R02889
KEGG Pathway	ko00500,ko01100,ko02026,map00500,map01100,map02026
GOs	GO:0000271,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0016020,GO:0016051,GO:0030243,GO:0030244,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044464,GO:0051273,GO:0051274,GO:0071704,GO:0071944,GO:0090540,GO:1901576
Evalue	1.3e-48
EggNOG OGs	COG1215@1\|root,COG1215@2\|Bacteria,1MWF8@1224\|Proteobacteria,1RPJ6@1236\|Gammaproteobacteria
EC	2.4.1.12
Description	Cellulose synthase
COG category	M
CAZy	GT2
BRITE	ko00000,ko00001,ko01000,ko01003,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3668	Ggra3668	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1038814..1041021 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3668.t1.stop1	Ggra3668.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1038814..1038816 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3668.t1.CDS1	Ggra3668.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1038814..1041021 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3668.t1.exon1	Ggra3668.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1038814..1041021 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3668.t1.start1	Ggra3668.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1041019..1041021 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3668.t1	Ggra3668.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1038814..1041021 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1038814..1041021-
coding sequence from alignment at tig00000850_pilon:1038814..1041021-

mRNA sequence

>Ggra3668.t1 ID=Ggra3668.t1|Name=Ggra3668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=736bp
MVLTNNETSQHHWHSAGGHRGIKPLKPQQPGEWKQGMAAHWMEQTQGVKW
LSILRRVVYILQFAATIAYLQFRARRTIGIFDSSQLPPYLAYQILFFVME
CLCAIPILIQLLQVWNVCRRNCIDFKQIPIELIKPYSSNKSVDQLESGPS
PYPSVGVYIPCYNEEVQLVHQTVLGALRIDYPPHRLNVYLCDDGHDAMKE
HMISKLKNRYSNVFYIARPEHNHAKAGNLNYALQNTECDLVVTLDADFIP
RPHMVQRLMPYYYVWNPESGLYEFNKTLAVVQTPQHFRNLSAHDSDPLDQ
RSLLFFDVIQPGKDWFNASTMVGTNNLISRAALKEAGYYPYYSITEDSAM
SLKFHSLGYRTFFVNESLATGLATTSLHSNLRQRARWMRGDWQILFSKHG
PFAVKGLSLIQRLLYINMGLGRLMSFVFMFYDVAAVLLLVFGITPLDVQH
AIEFIVYVTIFMTFSSLSQFALTAGGRGLHKCSAANFAFETIFRYDTMKG
LLLYLFRGQNLKFKVTEKSAGTNMGDDKMKAGTEVYSSESEEEESYGRVS
YEGEPTTESRSHSEAGAICDDTPAPEDSMKLKATQQQQARNGRRKEVLKN
IRRIWFNVLMAVLLTFTITWGIIRPPAIDTTVDGSTTASQATNFVPLMLA
LAFAGASLLPHLLAIYLCFPRYVSGWMLQDVAHGRCDQFAVHAKSGELYV
PWSYISLLTVARGFLLCGGVVAVLVYYVLQERGLL*

spliced messenger RNA

>Ggra3668.t1 ID=Ggra3668.t1|Name=Ggra3668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2208bp|location=Sequence derived from alignment at tig00000850_pilon:1038814..1041021- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTTACTAACAACGAAACTTCCCAGCATCATTGGCACTCTGCGGG
TGGCCACCGTGGCATCAAGCCCCTGAAGCCACAGCAACCGGGCGAATGGA
AACAAGGAATGGCTGCTCATTGGATGGAGCAAACTCAAGGAGTCAAGTGG
CTATCCATCCTTCGGCGGGTCGTGTACATATTACAATTCGCTGCAACGAT
TGCCTATCTCCAGTTCCGAGCTCGTCGTACCATCGGAATATTTGATAGTT
CTCAGCTGCCACCCTATCTGGCCTACCAGATCTTATTCTTTGTCATGGAA
TGCCTTTGTGCGATTCCTATATTGATTCAACTTCTTCAGGTGTGGAATGT
TTGCCGACGCAATTGTATAGACTTTAAGCAAATTCCAATCGAGCTTATCA
AACCCTATTCATCGAACAAATCTGTGGATCAACTCGAGTCTGGTCCTTCT
CCATACCCTTCTGTTGGAGTATACATCCCGTGTTACAACGAAGAAGTGCA
ACTCGTTCACCAGACTGTTTTAGGAGCGTTGAGGATCGATTATCCTCCGC
ATCGCCTCAATGTTTATCTTTGTGACGACGGACACGATGCTATGAAGGAG
CACATGATATCCAAGCTGAAGAATCGTTACTCCAACGTGTTCTACATCGC
CCGGCCGGAGCATAACCATGCCAAAGCTGGAAACCTGAATTACGCTCTCC
AGAACACAGAGTGTGATTTGGTGGTCACTCTTGATGCCGATTTCATCCCA
CGACCTCACATGGTTCAACGCCTCATGCCGTACTACTATGTATGGAATCC
AGAGAGTGGTTTATACGAGTTCAACAAGACTCTAGCTGTTGTTCAGACTC
CGCAGCACTTCCGCAACCTTTCCGCACACGACAGTGACCCACTTGACCAG
CGTTCGTTGCTGTTCTTTGACGTGATACAGCCCGGAAAGGACTGGTTTAA
TGCGTCAACAATGGTTGGTACGAACAATCTCATCAGCCGTGCCGCTTTGA
AAGAAGCGGGTTACTACCCCTATTACTCTATTACGGAGGACTCAGCCATG
TCTCTCAAGTTTCATAGTCTCGGATACCGTACGTTCTTCGTGAACGAATC
ACTTGCTACCGGTTTGGCCACTACTTCTCTGCACAGCAACTTACGCCAGA
GAGCGCGCTGGATGCGTGGAGATTGGCAGATCTTGTTCTCCAAGCACGGT
CCATTCGCAGTGAAAGGCTTGAGTTTGATTCAGCGATTGCTTTACATCAA
CATGGGCCTGGGTAGATTGATGTCGTTCGTGTTTATGTTTTACGACGTGG
CGGCCGTGCTATTGCTCGTGTTCGGCATTACGCCACTGGACGTACAACAT
GCGATCGAATTCATCGTGTACGTGACGATCTTCATGACGTTTTCCTCTCT
CTCTCAGTTCGCGTTGACTGCGGGCGGAAGAGGGCTGCACAAGTGCTCCG
CCGCAAACTTCGCATTCGAGACAATTTTCAGGTATGACACTATGAAGGGG
CTGCTGCTGTATCTGTTCCGCGGGCAGAACTTGAAGTTCAAGGTGACAGA
AAAATCAGCGGGGACGAACATGGGCGACGATAAGATGAAGGCTGGAACGG
AAGTCTATAGCTCGGAGAGCGAAGAAGAAGAGTCGTATGGAAGGGTCTCG
TACGAAGGCGAGCCGACGACAGAATCAAGATCGCATTCCGAAGCGGGCGC
AATTTGCGACGATACGCCAGCGCCGGAAGACAGCATGAAGCTCAAGGCTA
CACAACAACAACAGGCACGAAACGGGCGTCGAAAGGAGGTGTTGAAGAAC
ATTCGTCGAATCTGGTTTAACGTATTGATGGCCGTGCTATTAACGTTCAC
CATCACATGGGGCATTATTCGGCCGCCAGCAATCGACACGACCGTGGATG
GTAGTACGACCGCCTCTCAAGCGACGAACTTCGTGCCGTTGATGCTGGCG
CTGGCTTTTGCTGGCGCGAGTTTGTTACCGCATCTGTTGGCCATTTACTT
GTGCTTTCCACGGTACGTGAGCGGGTGGATGCTGCAGGATGTGGCACATG
GAAGATGTGATCAGTTTGCCGTGCACGCGAAGAGCGGGGAGTTGTACGTG
CCTTGGTCTTATATCTCGCTGCTGACGGTTGCGAGGGGGTTTCTGTTGTG
CGGTGGTGTGGTGGCTGTGCTGGTGTACTACGTGCTGCAGGAGAGAGGCT
TATTGTAA

protein sequence of Ggra3668.t1

>Ggra3668.t1 ID=Ggra3668.t1|Name=Ggra3668.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=736bp
MVLTNNETSQHHWHSAGGHRGIKPLKPQQPGEWKQGMAAHWMEQTQGVKW
LSILRRVVYILQFAATIAYLQFRARRTIGIFDSSQLPPYLAYQILFFVME
CLCAIPILIQLLQVWNVCRRNCIDFKQIPIELIKPYSSNKSVDQLESGPS
PYPSVGVYIPCYNEEVQLVHQTVLGALRIDYPPHRLNVYLCDDGHDAMKE
HMISKLKNRYSNVFYIARPEHNHAKAGNLNYALQNTECDLVVTLDADFIP
RPHMVQRLMPYYYVWNPESGLYEFNKTLAVVQTPQHFRNLSAHDSDPLDQ
RSLLFFDVIQPGKDWFNASTMVGTNNLISRAALKEAGYYPYYSITEDSAM
SLKFHSLGYRTFFVNESLATGLATTSLHSNLRQRARWMRGDWQILFSKHG
PFAVKGLSLIQRLLYINMGLGRLMSFVFMFYDVAAVLLLVFGITPLDVQH
AIEFIVYVTIFMTFSSLSQFALTAGGRGLHKCSAANFAFETIFRYDTMKG
LLLYLFRGQNLKFKVTEKSAGTNMGDDKMKAGTEVYSSESEEEESYGRVS
YEGEPTTESRSHSEAGAICDDTPAPEDSMKLKATQQQQARNGRRKEVLKN
IRRIWFNVLMAVLLTFTITWGIIRPPAIDTTVDGSTTASQATNFVPLMLA
LAFAGASLLPHLLAIYLCFPRYVSGWMLQDVAHGRCDQFAVHAKSGELYV
PWSYISLLTVARGFLLCGGVVAVLVYYVLQERGLL*

mRNA from alignment at tig00000850_pilon:1038814..1041021-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3668.t1 ID=Ggra3668.t1|Name=Ggra3668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2208bp|location=Sequence derived from alignment at tig00000850_pilon:1038814..1041021- (Gracilaria gracilis GNS1m male)
ATGGTCCTTACTAACAACGAAACTTCCCAGCATCATTGGCACTCTGCGGG
TGGCCACCGTGGCATCAAGCCCCTGAAGCCACAGCAACCGGGCGAATGGA
AACAAGGAATGGCTGCTCATTGGATGGAGCAAACTCAAGGAGTCAAGTGG
CTATCCATCCTTCGGCGGGTCGTGTACATATTACAATTCGCTGCAACGAT
TGCCTATCTCCAGTTCCGAGCTCGTCGTACCATCGGAATATTTGATAGTT
CTCAGCTGCCACCCTATCTGGCCTACCAGATCTTATTCTTTGTCATGGAA
TGCCTTTGTGCGATTCCTATATTGATTCAACTTCTTCAGGTGTGGAATGT
TTGCCGACGCAATTGTATAGACTTTAAGCAAATTCCAATCGAGCTTATCA
AACCCTATTCATCGAACAAATCTGTGGATCAACTCGAGTCTGGTCCTTCT
CCATACCCTTCTGTTGGAGTATACATCCCGTGTTACAACGAAGAAGTGCA
ACTCGTTCACCAGACTGTTTTAGGAGCGTTGAGGATCGATTATCCTCCGC
ATCGCCTCAATGTTTATCTTTGTGACGACGGACACGATGCTATGAAGGAG
CACATGATATCCAAGCTGAAGAATCGTTACTCCAACGTGTTCTACATCGC
CCGGCCGGAGCATAACCATGCCAAAGCTGGAAACCTGAATTACGCTCTCC
AGAACACAGAGTGTGATTTGGTGGTCACTCTTGATGCCGATTTCATCCCA
CGACCTCACATGGTTCAACGCCTCATGCCGTACTACTATGTATGGAATCC
AGAGAGTGGTTTATACGAGTTCAACAAGACTCTAGCTGTTGTTCAGACTC
CGCAGCACTTCCGCAACCTTTCCGCACACGACAGTGACCCACTTGACCAG
CGTTCGTTGCTGTTCTTTGACGTGATACAGCCCGGAAAGGACTGGTTTAA
TGCGTCAACAATGGTTGGTACGAACAATCTCATCAGCCGTGCCGCTTTGA
AAGAAGCGGGTTACTACCCCTATTACTCTATTACGGAGGACTCAGCCATG
TCTCTCAAGTTTCATAGTCTCGGATACCGTACGTTCTTCGTGAACGAATC
ACTTGCTACCGGTTTGGCCACTACTTCTCTGCACAGCAACTTACGCCAGA
GAGCGCGCTGGATGCGTGGAGATTGGCAGATCTTGTTCTCCAAGCACGGT
CCATTCGCAGTGAAAGGCTTGAGTTTGATTCAGCGATTGCTTTACATCAA
CATGGGCCTGGGTAGATTGATGTCGTTCGTGTTTATGTTTTACGACGTGG
CGGCCGTGCTATTGCTCGTGTTCGGCATTACGCCACTGGACGTACAACAT
GCGATCGAATTCATCGTGTACGTGACGATCTTCATGACGTTTTCCTCTCT
CTCTCAGTTCGCGTTGACTGCGGGCGGAAGAGGGCTGCACAAGTGCTCCG
CCGCAAACTTCGCATTCGAGACAATTTTCAGGTATGACACTATGAAGGGG
CTGCTGCTGTATCTGTTCCGCGGGCAGAACTTGAAGTTCAAGGTGACAGA
AAAATCAGCGGGGACGAACATGGGCGACGATAAGATGAAGGCTGGAACGG
AAGTCTATAGCTCGGAGAGCGAAGAAGAAGAGTCGTATGGAAGGGTCTCG
TACGAAGGCGAGCCGACGACAGAATCAAGATCGCATTCCGAAGCGGGCGC
AATTTGCGACGATACGCCAGCGCCGGAAGACAGCATGAAGCTCAAGGCTA
CACAACAACAACAGGCACGAAACGGGCGTCGAAAGGAGGTGTTGAAGAAC
ATTCGTCGAATCTGGTTTAACGTATTGATGGCCGTGCTATTAACGTTCAC
CATCACATGGGGCATTATTCGGCCGCCAGCAATCGACACGACCGTGGATG
GTAGTACGACCGCCTCTCAAGCGACGAACTTCGTGCCGTTGATGCTGGCG
CTGGCTTTTGCTGGCGCGAGTTTGTTACCGCATCTGTTGGCCATTTACTT
GTGCTTTCCACGGTACGTGAGCGGGTGGATGCTGCAGGATGTGGCACATG
GAAGATGTGATCAGTTTGCCGTGCACGCGAAGAGCGGGGAGTTGTACGTG
CCTTGGTCTTATATCTCGCTGCTGACGGTTGCGAGGGGGTTTCTGTTGTG
CGGTGGTGTGGTGGCTGTGCTGGTGTACTACGTGCTGCAGGAGAGAGGCT
TATTGTAA

Coding sequence (CDS) from alignment at tig00000850_pilon:1038814..1041021-

>Ggra3668.t1 ID=Ggra3668.t1|Name=Ggra3668.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2208bp|location=Sequence derived from alignment at tig00000850_pilon:1038814..1041021- (Gracilaria gracilis GNS1m male)
ATGGTCCTTACTAACAACGAAACTTCCCAGCATCATTGGCACTCTGCGGG
TGGCCACCGTGGCATCAAGCCCCTGAAGCCACAGCAACCGGGCGAATGGA
AACAAGGAATGGCTGCTCATTGGATGGAGCAAACTCAAGGAGTCAAGTGG
CTATCCATCCTTCGGCGGGTCGTGTACATATTACAATTCGCTGCAACGAT
TGCCTATCTCCAGTTCCGAGCTCGTCGTACCATCGGAATATTTGATAGTT
CTCAGCTGCCACCCTATCTGGCCTACCAGATCTTATTCTTTGTCATGGAA
TGCCTTTGTGCGATTCCTATATTGATTCAACTTCTTCAGGTGTGGAATGT
TTGCCGACGCAATTGTATAGACTTTAAGCAAATTCCAATCGAGCTTATCA
AACCCTATTCATCGAACAAATCTGTGGATCAACTCGAGTCTGGTCCTTCT
CCATACCCTTCTGTTGGAGTATACATCCCGTGTTACAACGAAGAAGTGCA
ACTCGTTCACCAGACTGTTTTAGGAGCGTTGAGGATCGATTATCCTCCGC
ATCGCCTCAATGTTTATCTTTGTGACGACGGACACGATGCTATGAAGGAG
CACATGATATCCAAGCTGAAGAATCGTTACTCCAACGTGTTCTACATCGC
CCGGCCGGAGCATAACCATGCCAAAGCTGGAAACCTGAATTACGCTCTCC
AGAACACAGAGTGTGATTTGGTGGTCACTCTTGATGCCGATTTCATCCCA
CGACCTCACATGGTTCAACGCCTCATGCCGTACTACTATGTATGGAATCC
AGAGAGTGGTTTATACGAGTTCAACAAGACTCTAGCTGTTGTTCAGACTC
CGCAGCACTTCCGCAACCTTTCCGCACACGACAGTGACCCACTTGACCAG
CGTTCGTTGCTGTTCTTTGACGTGATACAGCCCGGAAAGGACTGGTTTAA
TGCGTCAACAATGGTTGGTACGAACAATCTCATCAGCCGTGCCGCTTTGA
AAGAAGCGGGTTACTACCCCTATTACTCTATTACGGAGGACTCAGCCATG
TCTCTCAAGTTTCATAGTCTCGGATACCGTACGTTCTTCGTGAACGAATC
ACTTGCTACCGGTTTGGCCACTACTTCTCTGCACAGCAACTTACGCCAGA
GAGCGCGCTGGATGCGTGGAGATTGGCAGATCTTGTTCTCCAAGCACGGT
CCATTCGCAGTGAAAGGCTTGAGTTTGATTCAGCGATTGCTTTACATCAA
CATGGGCCTGGGTAGATTGATGTCGTTCGTGTTTATGTTTTACGACGTGG
CGGCCGTGCTATTGCTCGTGTTCGGCATTACGCCACTGGACGTACAACAT
GCGATCGAATTCATCGTGTACGTGACGATCTTCATGACGTTTTCCTCTCT
CTCTCAGTTCGCGTTGACTGCGGGCGGAAGAGGGCTGCACAAGTGCTCCG
CCGCAAACTTCGCATTCGAGACAATTTTCAGGTATGACACTATGAAGGGG
CTGCTGCTGTATCTGTTCCGCGGGCAGAACTTGAAGTTCAAGGTGACAGA
AAAATCAGCGGGGACGAACATGGGCGACGATAAGATGAAGGCTGGAACGG
AAGTCTATAGCTCGGAGAGCGAAGAAGAAGAGTCGTATGGAAGGGTCTCG
TACGAAGGCGAGCCGACGACAGAATCAAGATCGCATTCCGAAGCGGGCGC
AATTTGCGACGATACGCCAGCGCCGGAAGACAGCATGAAGCTCAAGGCTA
CACAACAACAACAGGCACGAAACGGGCGTCGAAAGGAGGTGTTGAAGAAC
ATTCGTCGAATCTGGTTTAACGTATTGATGGCCGTGCTATTAACGTTCAC
CATCACATGGGGCATTATTCGGCCGCCAGCAATCGACACGACCGTGGATG
GTAGTACGACCGCCTCTCAAGCGACGAACTTCGTGCCGTTGATGCTGGCG
CTGGCTTTTGCTGGCGCGAGTTTGTTACCGCATCTGTTGGCCATTTACTT
GTGCTTTCCACGGTACGTGAGCGGGTGGATGCTGCAGGATGTGGCACATG
GAAGATGTGATCAGTTTGCCGTGCACGCGAAGAGCGGGGAGTTGTACGTG
CCTTGGTCTTATATCTCGCTGCTGACGGTTGCGAGGGGGTTTCTGTTGTG
CGGTGGTGTGGTGGCTGTGCTGGTGTACTACGTGCTGCAGGAGAGAGGCT
TATTGTAA