Ggra11149.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11149.t1
Unique NameGgra11149.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000846_piloncontigtig00000846_pilon:2404..3728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11149Ggra11149Gracilaria gracilis GNS1m malegenetig00000846_pilon 2404..3728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11149.t1Ggra11149.t1Gracilaria gracilis GNS1m malepolypeptidetig00000846_pilon 2404..3728 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11149.t1.stop1Ggra11149.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000846_pilon 2404..2406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11149.t1.CDS1Ggra11149.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000846_pilon 2404..3120 -
Ggra11149.t1.CDS2Ggra11149.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000846_pilon 3414..3728 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11149.t1.exon1Ggra11149.t1.exon1Gracilaria gracilis GNS1m maleexontig00000846_pilon 2404..3120 -
Ggra11149.t1.exon2Ggra11149.t1.exon2Gracilaria gracilis GNS1m maleexontig00000846_pilon 3414..3728 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11149.t1.intron1Ggra11149.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000846_pilon 3121..3413 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11149.t1.start1Ggra11149.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000846_pilon 3726..3728 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11149.t1 ID=Ggra11149.t1|Name=Ggra11149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MVEVHLHGRSGDGKTTLAALLAEHRGATPEQHKFVPDSGARSHTHDAKVF
FVHEYAISDNPGLLDTSGNKQEKRNLQKIVNHACKPKYIQAFVIVINMQS
PRLDYKPQIRTQKAIEGMYDSTQKVKEAQRMAAEEKKLKEEAERAANEQK
RLKEIAEQKEEVGRRKRAEAERVIEEGRRRKEEPQPDKEHAQCNMAEAEK
RLIGVLVETAQQRNEEMRSQMENAMRMAWLSRTTGAGNVMQYRTSAGDNE
PVVEEPVQVDIVEELAAVSSPAPASQALMSPYVLPYSLYVKRRRGLVGVF
GKGVHKLERVFMGNHGDGTPRKRGLWGSFAELLDRTDSRCRFL*
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spliced messenger RNA

>Ggra11149.t1 ID=Ggra11149.t1|Name=Ggra11149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000846_pilon:2404..3728- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAAGTGCATCTACACGGCCGCAGTGGCGACGGCAAAACCACTCT
TGCTGCCTTGCTTGCTGAGCACAGAGGTGCAACGCCCGAACAACACAAGT
TCGTTCCCGACAGCGGAGCGCGTTCTCACACCCACGATGCCAAAGTCTTC
TTTGTGCACGAGTATGCCATCAGTGACAACCCTGGCTTACTTGACACCTC
CGGCAACAAACAAGAGAAGCGCAACCTGCAAAAAATTGTCAATCACGCTT
GCAAACCCAAGTACATCCAGGCATTTGTTATCGTTATCAACATGCAGTCG
CCGCGTCTCGATTACAAGCCACAAATACGGACACAGAAAGCGATAGAGGG
AATGTATGACAGCACCCAGAAAGTGAAAGAAGCTCAGAGAATGGCCGCAG
AAGAGAAGAAACTCAAGGAGGAAGCGGAACGCGCCGCAAATGAGCAAAAG
CGTCTGAAGGAAATAGCTGAACAAAAAGAAGAAGTTGGGCGACGCAAAAG
AGCTGAAGCAGAACGAGTCATAGAAGAAGGAAGACGCAGGAAGGAAGAAC
CCCAACCAGACAAAGAACACGCACAGTGCAATATGGCTGAAGCAGAGAAG
CGCCTGATTGGAGTACTTGTAGAAACTGCGCAACAGAGAAACGAAGAGAT
GAGATCGCAGATGGAGAACGCCATGAGAATGGCATGGTTGAGTCGCACGA
CTGGAGCGGGCAACGTCATGCAATACCGTACTTCGGCCGGCGACAATGAA
CCAGTGGTTGAAGAACCCGTGCAAGTGGATATAGTCGAAGAGCTCGCGGC
TGTTTCGTCTCCTGCGCCAGCGTCTCAGGCTCTCATGTCTCCTTATGTTT
TGCCTTACAGTCTCTACGTCAAAAGACGCCGTGGACTAGTTGGTGTCTTT
GGAAAAGGAGTACACAAGCTCGAGCGGGTTTTTATGGGAAATCACGGCGA
TGGAACGCCTAGAAAGCGTGGCCTGTGGGGCTCTTTTGCCGAGCTTCTGG
ATAGAACCGACTCCCGTTGCAGATTTCTTTAG
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protein sequence of Ggra11149.t1

>Ggra11149.t1 ID=Ggra11149.t1|Name=Ggra11149.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MVEVHLHGRSGDGKTTLAALLAEHRGATPEQHKFVPDSGARSHTHDAKVF
FVHEYAISDNPGLLDTSGNKQEKRNLQKIVNHACKPKYIQAFVIVINMQS
PRLDYKPQIRTQKAIEGMYDSTQKVKEAQRMAAEEKKLKEEAERAANEQK
RLKEIAEQKEEVGRRKRAEAERVIEEGRRRKEEPQPDKEHAQCNMAEAEK
RLIGVLVETAQQRNEEMRSQMENAMRMAWLSRTTGAGNVMQYRTSAGDNE
PVVEEPVQVDIVEELAAVSSPAPASQALMSPYVLPYSLYVKRRRGLVGVF
GKGVHKLERVFMGNHGDGTPRKRGLWGSFAELLDRTDSRCRFL*
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mRNA from alignment at tig00000846_pilon:2404..3728-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11149.t1 ID=Ggra11149.t1|Name=Ggra11149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1325bp|location=Sequence derived from alignment at tig00000846_pilon:2404..3728- (Gracilaria gracilis GNS1m male)
ATGGTTGAAGTGCATCTACACGGCCGCAGTGGCGACGGCAAAACCACTCT
TGCTGCCTTGCTTGCTGAGCACAGAGGTGCAACGCCCGAACAACACAAGT
TCGTTCCCGACAGCGGAGCGCGTTCTCACACCCACGATGCCAAAGTCTTC
TTTGTGCACGAGTATGCCATCAGTGACAACCCTGGCTTACTTGACACCTC
CGGCAACAAACAAGAGAAGCGCAACCTGCAAAAAATTGTCAATCACGCTT
GCAAACCCAAGTACATCCAGGCATTTGTTATCGTTATCAACATGCAGTCG
CCGCGTCTCGATTACGTATGCAGAATGCCATCCAGTTGCTCATTGATTAG
TTCGGAAAGGAAAGTCTTGGAGTTATCGCTATAGTATACACACGTGTATA
TGAGTTGGACGCCCCTAAACAATGTGAGGAGCATGCTAAACAAGTTGCAA
GCATTATCCAAAAGCGTTGCAATCTTTCACAGACTCCGCGCTTTCCGAGC
TACTGTGTTGAAGCACATCCCACCCCTCTCCTGAGAGACGAGACCGTGCA
AATGATCAAGGAAAGAAACAACGCAGCACATTGATGACTTGCTTCGTTGG
GCATGCAGAAGCCACAAATACGGACACAGAAAGCGATAGAGGGAATGTAT
GACAGCACCCAGAAAGTGAAAGAAGCTCAGAGAATGGCCGCAGAAGAGAA
GAAACTCAAGGAGGAAGCGGAACGCGCCGCAAATGAGCAAAAGCGTCTGA
AGGAAATAGCTGAACAAAAAGAAGAAGTTGGGCGACGCAAAAGAGCTGAA
GCAGAACGAGTCATAGAAGAAGGAAGACGCAGGAAGGAAGAACCCCAACC
AGACAAAGAACACGCACAGTGCAATATGGCTGAAGCAGAGAAGCGCCTGA
TTGGAGTACTTGTAGAAACTGCGCAACAGAGAAACGAAGAGATGAGATCG
CAGATGGAGAACGCCATGAGAATGGCATGGTTGAGTCGCACGACTGGAGC
GGGCAACGTCATGCAATACCGTACTTCGGCCGGCGACAATGAACCAGTGG
TTGAAGAACCCGTGCAAGTGGATATAGTCGAAGAGCTCGCGGCTGTTTCG
TCTCCTGCGCCAGCGTCTCAGGCTCTCATGTCTCCTTATGTTTTGCCTTA
CAGTCTCTACGTCAAAAGACGCCGTGGACTAGTTGGTGTCTTTGGAAAAG
GAGTACACAAGCTCGAGCGGGTTTTTATGGGAAATCACGGCGATGGAACG
CCTAGAAAGCGTGGCCTGTGGGGCTCTTTTGCCGAGCTTCTGGATAGAAC
CGACTCCCGTTGCAGATTTCTTTAG
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Coding sequence (CDS) from alignment at tig00000846_pilon:2404..3728-

>Ggra11149.t1 ID=Ggra11149.t1|Name=Ggra11149.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000846_pilon:2404..3728- (Gracilaria gracilis GNS1m male)
ATGGTTGAAGTGCATCTACACGGCCGCAGTGGCGACGGCAAAACCACTCT
TGCTGCCTTGCTTGCTGAGCACAGAGGTGCAACGCCCGAACAACACAAGT
TCGTTCCCGACAGCGGAGCGCGTTCTCACACCCACGATGCCAAAGTCTTC
TTTGTGCACGAGTATGCCATCAGTGACAACCCTGGCTTACTTGACACCTC
CGGCAACAAACAAGAGAAGCGCAACCTGCAAAAAATTGTCAATCACGCTT
GCAAACCCAAGTACATCCAGGCATTTGTTATCGTTATCAACATGCAGTCG
CCGCGTCTCGATTACAAGCCACAAATACGGACACAGAAAGCGATAGAGGG
AATGTATGACAGCACCCAGAAAGTGAAAGAAGCTCAGAGAATGGCCGCAG
AAGAGAAGAAACTCAAGGAGGAAGCGGAACGCGCCGCAAATGAGCAAAAG
CGTCTGAAGGAAATAGCTGAACAAAAAGAAGAAGTTGGGCGACGCAAAAG
AGCTGAAGCAGAACGAGTCATAGAAGAAGGAAGACGCAGGAAGGAAGAAC
CCCAACCAGACAAAGAACACGCACAGTGCAATATGGCTGAAGCAGAGAAG
CGCCTGATTGGAGTACTTGTAGAAACTGCGCAACAGAGAAACGAAGAGAT
GAGATCGCAGATGGAGAACGCCATGAGAATGGCATGGTTGAGTCGCACGA
CTGGAGCGGGCAACGTCATGCAATACCGTACTTCGGCCGGCGACAATGAA
CCAGTGGTTGAAGAACCCGTGCAAGTGGATATAGTCGAAGAGCTCGCGGC
TGTTTCGTCTCCTGCGCCAGCGTCTCAGGCTCTCATGTCTCCTTATGTTT
TGCCTTACAGTCTCTACGTCAAAAGACGCCGTGGACTAGTTGGTGTCTTT
GGAAAAGGAGTACACAAGCTCGAGCGGGTTTTTATGGGAAATCACGGCGA
TGGAACGCCTAGAAAGCGTGGCCTGTGGGGCTCTTTTGCCGAGCTTCTGG
ATAGAACCGACTCCCGTTGCAGATTTCTTTAG
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