Ggra10253.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10253.t1
Unique Name	Ggra10253.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:219968..221905 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708801.1
Preferred name	lztr1
PFAMs	BTB,F-box-like,Jacalin,Kelch_1,Kelch_2,Kelch_3,Kelch_4,Kelch_5,PAS_9
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12115,ko:K12116,ko:K12117
KEGG Pathway	ko04712,map04712
GOs	GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
Evalue	8.9e-132
EggNOG OGs	2CMFB@1\|root,2QQ74@2759\|Eukaryota
Description	Galactose oxidase, central domain
COG category	S
BRITE	ko00000,ko00001,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10253	Ggra10253	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 219968..221905 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10253.t1.start1	Ggra10253.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 219968..219970 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10253.t1.CDS1	Ggra10253.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 219968..221905 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10253.t1.exon1	Ggra10253.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 219968..221905 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10253.t1.stop1	Ggra10253.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 221903..221905 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10253.t1	Ggra10253.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 219968..221905 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:219968..221905+
coding sequence from alignment at tig00000016_pilon:219968..221905+

mRNA sequence

>Ggra10253.t1 ID=Ggra10253.t1|Name=Ggra10253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=646bp
MHRHSFPSLHSSPTLPPEAPRRSTPASDTIPEWVINESMDDRVPCPRAGH
SLASFEDKLYLFGGCCCYGTPEDLHEASDAPDAGGELLHFNSLHEYSTGT
NKWRCLHPGGEIRLRSRLIPKERRHASLVVHGRSLYLYGGFDRSDHVLSD
LWEFRIDDKKWALVSGNPEACAYGVYDPLPVIVRVPAPVARAEHTAVVHK
HRMVVFGGYDGKKKLNDTFVFDFSTRRWSSPFPARQGAPSRRCKHSAVLY
KGKMYVVGGFQYKDGDNYALTDIHALDLDSFTWQNFDVGESAPQALQGHK
AVVCGDTMYIMGGKVRLRNVRHSMPASMPNQTSPVGIIPSTLEGSVTHVN
LATLLPQSDAGPVTIPPDYMADETRSSGLNHVVFTYDFATTRWAVLRTIG
MPPTPRQLHAVVPVRTSERRCSIFVFGGTDRSKQRYYNDLVQLRGIPSPV
KLSSQRCDTCSSTRSLLNNEMFSDVKFVVEGKTIHAHKCILYARSEYFRS
MFDSSMRETSASDIPIPDVSYDVFHGVLEYLYSGEVRISDGQVAVELLKA
ADMFRIEGLKNICAEKVEEGITALNAAFICQVADRHNSSNLKNYCIAYIV
QNFRHVIKTESFEDLMTQDAGGLGREILVAFSDSTSYVGLKRART*

spliced messenger RNA

>Ggra10253.t1 ID=Ggra10253.t1|Name=Ggra10253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00000016_pilon:219968..221905+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGTCACAGCTTCCCCTCGCTCCATTCCTCACCAACTCTGCCCCC
CGAAGCGCCCCGTCGATCCACGCCTGCGTCTGATACCATCCCAGAATGGG
TTATCAACGAATCCATGGATGATCGAGTACCTTGCCCGCGAGCCGGACAT
TCGCTCGCGTCGTTTGAGGACAAGCTTTATCTGTTCGGCGGCTGCTGTTG
CTATGGTACCCCAGAAGATCTGCATGAAGCAAGCGATGCGCCTGATGCCG
GTGGCGAGCTGCTTCACTTTAATTCTCTTCACGAGTATTCCACGGGAACT
AACAAATGGCGCTGCCTTCACCCGGGCGGCGAAATACGACTTCGTTCCAG
ACTCATCCCGAAGGAACGTCGTCATGCCTCGCTCGTCGTACACGGTCGCT
CTCTTTACTTGTACGGTGGATTTGACCGCAGCGATCATGTGTTGTCTGAT
CTGTGGGAATTTCGCATTGATGACAAAAAGTGGGCGCTAGTTTCCGGCAA
TCCCGAAGCGTGTGCTTATGGCGTATATGATCCTCTACCGGTCATTGTGC
GCGTTCCAGCTCCTGTCGCGCGAGCTGAACACACCGCAGTCGTCCACAAG
CACCGAATGGTTGTGTTTGGCGGTTATGATGGTAAGAAGAAGCTCAACGA
TACTTTTGTTTTCGACTTTTCCACGAGAAGATGGTCGTCTCCCTTCCCGG
CTCGGCAGGGTGCGCCAAGCCGCCGTTGCAAGCATTCCGCGGTGCTGTAC
AAAGGAAAGATGTATGTTGTCGGTGGCTTCCAGTACAAGGACGGTGATAA
CTATGCCCTCACCGATATTCACGCTCTTGATCTGGATTCTTTCACCTGGC
AAAATTTTGACGTCGGTGAATCAGCTCCTCAGGCGTTGCAAGGACATAAA
GCTGTTGTTTGCGGTGATACGATGTACATCATGGGAGGCAAAGTGCGCCT
GCGCAATGTGCGACATAGCATGCCGGCTAGCATGCCGAATCAGACATCTC
CCGTCGGCATTATTCCATCCACGCTAGAGGGGAGCGTAACCCATGTTAAT
CTGGCAACACTCCTGCCGCAGAGCGATGCTGGACCTGTCACAATCCCACC
AGATTACATGGCAGATGAGACAAGAAGCTCAGGGCTTAACCACGTCGTAT
TTACGTACGACTTTGCAACTACTCGATGGGCTGTTCTCCGAACAATTGGT
ATGCCACCAACCCCGAGGCAATTGCATGCGGTAGTCCCAGTTCGAACAAG
TGAAAGACGGTGCTCGATATTCGTGTTTGGCGGCACAGATAGATCGAAGC
AACGGTATTACAACGACCTTGTTCAACTTCGGGGCATCCCGTCGCCAGTG
AAGCTCTCGTCTCAACGGTGTGACACATGTTCGTCTACAAGGTCCCTCCT
GAACAATGAAATGTTTTCAGATGTGAAGTTCGTTGTCGAAGGGAAAACGA
TTCATGCTCACAAATGTATCCTATACGCTCGTTCGGAGTACTTCAGGAGC
ATGTTTGATTCTAGTATGCGGGAAACTTCTGCGTCCGATATTCCGATTCC
AGATGTGTCTTACGATGTATTCCACGGGGTATTAGAGTACTTGTACTCTG
GTGAAGTTCGGATCAGCGATGGTCAGGTGGCAGTAGAGCTTCTCAAGGCT
GCTGACATGTTCAGAATTGAGGGATTGAAGAACATATGTGCTGAGAAGGT
GGAAGAAGGTATCACTGCTCTCAACGCTGCATTCATCTGTCAAGTTGCGG
ACAGGCACAACTCTTCGAACTTGAAAAACTATTGTATAGCTTACATAGTC
CAGAACTTCCGACATGTAATCAAGACGGAATCCTTCGAGGATCTCATGAC
CCAAGATGCAGGAGGCCTAGGGCGGGAAATATTAGTGGCCTTCTCAGACA
GTACATCATACGTGGGATTGAAACGCGCTCGAACATGA

protein sequence of Ggra10253.t1

>Ggra10253.t1 ID=Ggra10253.t1|Name=Ggra10253.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=646bp
MHRHSFPSLHSSPTLPPEAPRRSTPASDTIPEWVINESMDDRVPCPRAGH
SLASFEDKLYLFGGCCCYGTPEDLHEASDAPDAGGELLHFNSLHEYSTGT
NKWRCLHPGGEIRLRSRLIPKERRHASLVVHGRSLYLYGGFDRSDHVLSD
LWEFRIDDKKWALVSGNPEACAYGVYDPLPVIVRVPAPVARAEHTAVVHK
HRMVVFGGYDGKKKLNDTFVFDFSTRRWSSPFPARQGAPSRRCKHSAVLY
KGKMYVVGGFQYKDGDNYALTDIHALDLDSFTWQNFDVGESAPQALQGHK
AVVCGDTMYIMGGKVRLRNVRHSMPASMPNQTSPVGIIPSTLEGSVTHVN
LATLLPQSDAGPVTIPPDYMADETRSSGLNHVVFTYDFATTRWAVLRTIG
MPPTPRQLHAVVPVRTSERRCSIFVFGGTDRSKQRYYNDLVQLRGIPSPV
KLSSQRCDTCSSTRSLLNNEMFSDVKFVVEGKTIHAHKCILYARSEYFRS
MFDSSMRETSASDIPIPDVSYDVFHGVLEYLYSGEVRISDGQVAVELLKA
ADMFRIEGLKNICAEKVEEGITALNAAFICQVADRHNSSNLKNYCIAYIV
QNFRHVIKTESFEDLMTQDAGGLGREILVAFSDSTSYVGLKRART*

mRNA from alignment at tig00000016_pilon:219968..221905+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10253.t1 ID=Ggra10253.t1|Name=Ggra10253.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00000016_pilon:219968..221905+ (Gracilaria gracilis GNS1m male)
ATGCATCGTCACAGCTTCCCCTCGCTCCATTCCTCACCAACTCTGCCCCC
CGAAGCGCCCCGTCGATCCACGCCTGCGTCTGATACCATCCCAGAATGGG
TTATCAACGAATCCATGGATGATCGAGTACCTTGCCCGCGAGCCGGACAT
TCGCTCGCGTCGTTTGAGGACAAGCTTTATCTGTTCGGCGGCTGCTGTTG
CTATGGTACCCCAGAAGATCTGCATGAAGCAAGCGATGCGCCTGATGCCG
GTGGCGAGCTGCTTCACTTTAATTCTCTTCACGAGTATTCCACGGGAACT
AACAAATGGCGCTGCCTTCACCCGGGCGGCGAAATACGACTTCGTTCCAG
ACTCATCCCGAAGGAACGTCGTCATGCCTCGCTCGTCGTACACGGTCGCT
CTCTTTACTTGTACGGTGGATTTGACCGCAGCGATCATGTGTTGTCTGAT
CTGTGGGAATTTCGCATTGATGACAAAAAGTGGGCGCTAGTTTCCGGCAA
TCCCGAAGCGTGTGCTTATGGCGTATATGATCCTCTACCGGTCATTGTGC
GCGTTCCAGCTCCTGTCGCGCGAGCTGAACACACCGCAGTCGTCCACAAG
CACCGAATGGTTGTGTTTGGCGGTTATGATGGTAAGAAGAAGCTCAACGA
TACTTTTGTTTTCGACTTTTCCACGAGAAGATGGTCGTCTCCCTTCCCGG
CTCGGCAGGGTGCGCCAAGCCGCCGTTGCAAGCATTCCGCGGTGCTGTAC
AAAGGAAAGATGTATGTTGTCGGTGGCTTCCAGTACAAGGACGGTGATAA
CTATGCCCTCACCGATATTCACGCTCTTGATCTGGATTCTTTCACCTGGC
AAAATTTTGACGTCGGTGAATCAGCTCCTCAGGCGTTGCAAGGACATAAA
GCTGTTGTTTGCGGTGATACGATGTACATCATGGGAGGCAAAGTGCGCCT
GCGCAATGTGCGACATAGCATGCCGGCTAGCATGCCGAATCAGACATCTC
CCGTCGGCATTATTCCATCCACGCTAGAGGGGAGCGTAACCCATGTTAAT
CTGGCAACACTCCTGCCGCAGAGCGATGCTGGACCTGTCACAATCCCACC
AGATTACATGGCAGATGAGACAAGAAGCTCAGGGCTTAACCACGTCGTAT
TTACGTACGACTTTGCAACTACTCGATGGGCTGTTCTCCGAACAATTGGT
ATGCCACCAACCCCGAGGCAATTGCATGCGGTAGTCCCAGTTCGAACAAG
TGAAAGACGGTGCTCGATATTCGTGTTTGGCGGCACAGATAGATCGAAGC
AACGGTATTACAACGACCTTGTTCAACTTCGGGGCATCCCGTCGCCAGTG
AAGCTCTCGTCTCAACGGTGTGACACATGTTCGTCTACAAGGTCCCTCCT
GAACAATGAAATGTTTTCAGATGTGAAGTTCGTTGTCGAAGGGAAAACGA
TTCATGCTCACAAATGTATCCTATACGCTCGTTCGGAGTACTTCAGGAGC
ATGTTTGATTCTAGTATGCGGGAAACTTCTGCGTCCGATATTCCGATTCC
AGATGTGTCTTACGATGTATTCCACGGGGTATTAGAGTACTTGTACTCTG
GTGAAGTTCGGATCAGCGATGGTCAGGTGGCAGTAGAGCTTCTCAAGGCT
GCTGACATGTTCAGAATTGAGGGATTGAAGAACATATGTGCTGAGAAGGT
GGAAGAAGGTATCACTGCTCTCAACGCTGCATTCATCTGTCAAGTTGCGG
ACAGGCACAACTCTTCGAACTTGAAAAACTATTGTATAGCTTACATAGTC
CAGAACTTCCGACATGTAATCAAGACGGAATCCTTCGAGGATCTCATGAC
CCAAGATGCAGGAGGCCTAGGGCGGGAAATATTAGTGGCCTTCTCAGACA
GTACATCATACGTGGGATTGAAACGCGCTCGAACATGA

Coding sequence (CDS) from alignment at tig00000016_pilon:219968..221905+

>Ggra10253.t1 ID=Ggra10253.t1|Name=Ggra10253.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1938bp|location=Sequence derived from alignment at tig00000016_pilon:219968..221905+ (Gracilaria gracilis GNS1m male)
ATGCATCGTCACAGCTTCCCCTCGCTCCATTCCTCACCAACTCTGCCCCC
CGAAGCGCCCCGTCGATCCACGCCTGCGTCTGATACCATCCCAGAATGGG
TTATCAACGAATCCATGGATGATCGAGTACCTTGCCCGCGAGCCGGACAT
TCGCTCGCGTCGTTTGAGGACAAGCTTTATCTGTTCGGCGGCTGCTGTTG
CTATGGTACCCCAGAAGATCTGCATGAAGCAAGCGATGCGCCTGATGCCG
GTGGCGAGCTGCTTCACTTTAATTCTCTTCACGAGTATTCCACGGGAACT
AACAAATGGCGCTGCCTTCACCCGGGCGGCGAAATACGACTTCGTTCCAG
ACTCATCCCGAAGGAACGTCGTCATGCCTCGCTCGTCGTACACGGTCGCT
CTCTTTACTTGTACGGTGGATTTGACCGCAGCGATCATGTGTTGTCTGAT
CTGTGGGAATTTCGCATTGATGACAAAAAGTGGGCGCTAGTTTCCGGCAA
TCCCGAAGCGTGTGCTTATGGCGTATATGATCCTCTACCGGTCATTGTGC
GCGTTCCAGCTCCTGTCGCGCGAGCTGAACACACCGCAGTCGTCCACAAG
CACCGAATGGTTGTGTTTGGCGGTTATGATGGTAAGAAGAAGCTCAACGA
TACTTTTGTTTTCGACTTTTCCACGAGAAGATGGTCGTCTCCCTTCCCGG
CTCGGCAGGGTGCGCCAAGCCGCCGTTGCAAGCATTCCGCGGTGCTGTAC
AAAGGAAAGATGTATGTTGTCGGTGGCTTCCAGTACAAGGACGGTGATAA
CTATGCCCTCACCGATATTCACGCTCTTGATCTGGATTCTTTCACCTGGC
AAAATTTTGACGTCGGTGAATCAGCTCCTCAGGCGTTGCAAGGACATAAA
GCTGTTGTTTGCGGTGATACGATGTACATCATGGGAGGCAAAGTGCGCCT
GCGCAATGTGCGACATAGCATGCCGGCTAGCATGCCGAATCAGACATCTC
CCGTCGGCATTATTCCATCCACGCTAGAGGGGAGCGTAACCCATGTTAAT
CTGGCAACACTCCTGCCGCAGAGCGATGCTGGACCTGTCACAATCCCACC
AGATTACATGGCAGATGAGACAAGAAGCTCAGGGCTTAACCACGTCGTAT
TTACGTACGACTTTGCAACTACTCGATGGGCTGTTCTCCGAACAATTGGT
ATGCCACCAACCCCGAGGCAATTGCATGCGGTAGTCCCAGTTCGAACAAG
TGAAAGACGGTGCTCGATATTCGTGTTTGGCGGCACAGATAGATCGAAGC
AACGGTATTACAACGACCTTGTTCAACTTCGGGGCATCCCGTCGCCAGTG
AAGCTCTCGTCTCAACGGTGTGACACATGTTCGTCTACAAGGTCCCTCCT
GAACAATGAAATGTTTTCAGATGTGAAGTTCGTTGTCGAAGGGAAAACGA
TTCATGCTCACAAATGTATCCTATACGCTCGTTCGGAGTACTTCAGGAGC
ATGTTTGATTCTAGTATGCGGGAAACTTCTGCGTCCGATATTCCGATTCC
AGATGTGTCTTACGATGTATTCCACGGGGTATTAGAGTACTTGTACTCTG
GTGAAGTTCGGATCAGCGATGGTCAGGTGGCAGTAGAGCTTCTCAAGGCT
GCTGACATGTTCAGAATTGAGGGATTGAAGAACATATGTGCTGAGAAGGT
GGAAGAAGGTATCACTGCTCTCAACGCTGCATTCATCTGTCAAGTTGCGG
ACAGGCACAACTCTTCGAACTTGAAAAACTATTGTATAGCTTACATAGTC
CAGAACTTCCGACATGTAATCAAGACGGAATCCTTCGAGGATCTCATGAC
CCAAGATGCAGGAGGCCTAGGGCGGGAAATATTAGTGGCCTTCTCAGACA
GTACATCATACGTGGGATTGAAACGCGCTCGAACATGA