Ggra10249.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10249.t1
Unique NameGgra10249.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:207805..208808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO310CT
Preferred nameRPL7
PFAMsRibosomal_L30,Ribosomal_L30_N
Max annot lvl2759|Eukaryota
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
Evalue2.31e-113
EggNOG OGsCOG1841@1|root,KOG3184@2759|Eukaryota
EC2.7.11.22,2.7.11.23
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10249Ggra10249Gracilaria gracilis GNS1m malegenetig00000016_pilon 207805..208808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10249.t1Ggra10249.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 207805..208808 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10249.t1.stop1Ggra10249.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 207805..207807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10249.t1.CDS1Ggra10249.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 207805..208537 -
Ggra10249.t1.CDS2Ggra10249.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 208789..208808 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10249.t1.exon1Ggra10249.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 207805..208537 -
Ggra10249.t1.exon2Ggra10249.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 208789..208808 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10249.t1.intron1Ggra10249.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 208538..208788 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10249.t1.start1Ggra10249.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 208806..208808 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10249.t1 ID=Ggra10249.t1|Name=Ggra10249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MVAKTDNIPVPESILKKRRTQERVAGERLIAAQAAKKARREAKKESFKRA
ETYAAEYKASERSVIDAKRAARKEGKFYVPDGAKVAFVIRIRGINSMPPK
EKKILQLLRLRQIQNGVFVKLNYATIRMLQRVEPYITYGYPNLKSVKELI
YKRGFAKIGKPGSWSRIPLSDNRIIEQVLGKHDIICMEDLVHEIFTCGPH
FKEANNFLWPFKLSSPRGGYSKKSKLIHFAEGGDAGNREDLINPMIRKMN
*
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spliced messenger RNA

>Ggra10249.t1 ID=Ggra10249.t1|Name=Ggra10249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000016_pilon:207805..208808- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCAAGACGGACAATATTCCGGTGCCCGAAAGCATCTTGAAGAA
GCGTCGCACGCAAGAGCGCGTTGCTGGTGAGCGTCTTATTGCGGCGCAGG
CGGCAAAGAAGGCACGCCGTGAGGCCAAGAAGGAGTCGTTCAAACGAGCT
GAAACTTATGCGGCCGAGTACAAAGCATCCGAGCGTTCCGTCATCGATGC
GAAGCGAGCCGCCCGTAAGGAAGGCAAGTTCTACGTCCCGGACGGTGCGA
AGGTTGCCTTTGTTATTCGTATTCGCGGTATCAACTCCATGCCGCCGAAA
GAGAAGAAGATTCTTCAGCTCTTGCGTCTTCGCCAGATTCAGAACGGTGT
TTTCGTTAAGCTGAACTATGCTACTATTCGTATGCTGCAGAGGGTTGAAC
CATACATCACGTACGGTTATCCCAACCTGAAGAGTGTGAAGGAACTTATT
TACAAGAGGGGATTCGCGAAGATCGGAAAGCCAGGTTCATGGTCTCGTAT
TCCTTTGTCCGACAACAGAATTATTGAACAAGTTCTTGGCAAGCACGATA
TCATATGTATGGAGGATTTGGTTCATGAGATCTTCACGTGCGGGCCCCAC
TTCAAGGAGGCTAACAACTTTTTGTGGCCTTTCAAGCTTTCATCGCCGCG
TGGTGGATACTCCAAGAAGTCAAAGCTTATCCACTTTGCTGAAGGTGGAG
ATGCTGGTAACCGGGAAGACCTGATCAACCCAATGATCCGAAAGATGAAC
TAG
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protein sequence of Ggra10249.t1

>Ggra10249.t1 ID=Ggra10249.t1|Name=Ggra10249.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MVAKTDNIPVPESILKKRRTQERVAGERLIAAQAAKKARREAKKESFKRA
ETYAAEYKASERSVIDAKRAARKEGKFYVPDGAKVAFVIRIRGINSMPPK
EKKILQLLRLRQIQNGVFVKLNYATIRMLQRVEPYITYGYPNLKSVKELI
YKRGFAKIGKPGSWSRIPLSDNRIIEQVLGKHDIICMEDLVHEIFTCGPH
FKEANNFLWPFKLSSPRGGYSKKSKLIHFAEGGDAGNREDLINPMIRKMN
*
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mRNA from alignment at tig00000016_pilon:207805..208808-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10249.t1 ID=Ggra10249.t1|Name=Ggra10249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1004bp|location=Sequence derived from alignment at tig00000016_pilon:207805..208808- (Gracilaria gracilis GNS1m male)
ATGGTTGCCAAGACGGACAAGTAAGTAGTATCATGCCTTCCCGCGATCCG
TTTATATTCGCACTGCATTTCGTCAGGAAGCGATGCTCGAAGACTTCCGA
TTAGCTTCTGGTGCAAACCCAGCTGCATCGTCGTTCACCCTAGTCTCCTG
AATTGCTGCTTGATTGAATATGATGGTTAAGACGGAGCGCATCTTTCACA
AGCGACCAATGTGGCTTTTTTATCACAATAGCCGTACTAACTTTCGTTTG
TCAAACTTTTGTCCGTTATAGTATTCCGGTGCCCGAAAGCATCTTGAAGA
AGCGTCGCACGCAAGAGCGCGTTGCTGGTGAGCGTCTTATTGCGGCGCAG
GCGGCAAAGAAGGCACGCCGTGAGGCCAAGAAGGAGTCGTTCAAACGAGC
TGAAACTTATGCGGCCGAGTACAAAGCATCCGAGCGTTCCGTCATCGATG
CGAAGCGAGCCGCCCGTAAGGAAGGCAAGTTCTACGTCCCGGACGGTGCG
AAGGTTGCCTTTGTTATTCGTATTCGCGGTATCAACTCCATGCCGCCGAA
AGAGAAGAAGATTCTTCAGCTCTTGCGTCTTCGCCAGATTCAGAACGGTG
TTTTCGTTAAGCTGAACTATGCTACTATTCGTATGCTGCAGAGGGTTGAA
CCATACATCACGTACGGTTATCCCAACCTGAAGAGTGTGAAGGAACTTAT
TTACAAGAGGGGATTCGCGAAGATCGGAAAGCCAGGTTCATGGTCTCGTA
TTCCTTTGTCCGACAACAGAATTATTGAACAAGTTCTTGGCAAGCACGAT
ATCATATGTATGGAGGATTTGGTTCATGAGATCTTCACGTGCGGGCCCCA
CTTCAAGGAGGCTAACAACTTTTTGTGGCCTTTCAAGCTTTCATCGCCGC
GTGGTGGATACTCCAAGAAGTCAAAGCTTATCCACTTTGCTGAAGGTGGA
GATGCTGGTAACCGGGAAGACCTGATCAACCCAATGATCCGAAAGATGAA
CTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:207805..208808-

>Ggra10249.t1 ID=Ggra10249.t1|Name=Ggra10249.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000016_pilon:207805..208808- (Gracilaria gracilis GNS1m male)
ATGGTTGCCAAGACGGACAATATTCCGGTGCCCGAAAGCATCTTGAAGAA
GCGTCGCACGCAAGAGCGCGTTGCTGGTGAGCGTCTTATTGCGGCGCAGG
CGGCAAAGAAGGCACGCCGTGAGGCCAAGAAGGAGTCGTTCAAACGAGCT
GAAACTTATGCGGCCGAGTACAAAGCATCCGAGCGTTCCGTCATCGATGC
GAAGCGAGCCGCCCGTAAGGAAGGCAAGTTCTACGTCCCGGACGGTGCGA
AGGTTGCCTTTGTTATTCGTATTCGCGGTATCAACTCCATGCCGCCGAAA
GAGAAGAAGATTCTTCAGCTCTTGCGTCTTCGCCAGATTCAGAACGGTGT
TTTCGTTAAGCTGAACTATGCTACTATTCGTATGCTGCAGAGGGTTGAAC
CATACATCACGTACGGTTATCCCAACCTGAAGAGTGTGAAGGAACTTATT
TACAAGAGGGGATTCGCGAAGATCGGAAAGCCAGGTTCATGGTCTCGTAT
TCCTTTGTCCGACAACAGAATTATTGAACAAGTTCTTGGCAAGCACGATA
TCATATGTATGGAGGATTTGGTTCATGAGATCTTCACGTGCGGGCCCCAC
TTCAAGGAGGCTAACAACTTTTTGTGGCCTTTCAAGCTTTCATCGCCGCG
TGGTGGATACTCCAAGAAGTCAAAGCTTATCCACTTTGCTGAAGGTGGAG
ATGCTGGTAACCGGGAAGACCTGATCAACCCAATGATCCGAAAGATGAAC
TAG
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