Ggra1559.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1559.t1
Unique NameGgra1559.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Homology
BLAST of Ggra1559.t1 vs. uniprot
Match: A0A2V3J0T1 (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0T1_9FLOR)

HSP 1 Score: 334 bits (857), Expect = 1.200e-114
Identity = 160/211 (75.83%), Postives = 188/211 (89.10%), Query Frame = 0
Query:    1 MGAKCVYNISTEGTSPAMVQREIIRRIEAHTGRKSTTWQVNVSIHATPDKKRPTLELVTLPDVANRMYIISQPLVTEAEPEILRMLGRMSTYVPKVTLSARGWEYDFVDFSVRVGMSFDRHGGATGVVVQIEYQPCSYTADCESLIAELMERIAAPLVPPPQANSDPGISAAATTAYNYNRIEIDSKKFTEKDLVPFSHRTEALLFARLLR 211
            MGAKCVY+ISTEG SPAMV+REIIRRIEAHTGR+ T+WQV VS H  PDKKRPT+E+V+LPD+ +R+++IS PLVTEA+P ++ +L R+S Y PK   SARG ++DFVDF VRVGMSFDRHGGATGVVVQIEY+PCSYTADCE LIAELMERIAAPLVPPPQAN DPGISAAATT+YNY R+++D+ KF +KDL+PFSHRTEALLFA+LLR
Sbjct:    1 MGAKCVYDISTEGKSPAMVEREIIRRIEAHTGRRLTSWQVTVSFHTNPDKKRPTIEIVSLPDIKDRVFLISPPLVTEAQPTLVPLLRRISNYSPKYNRSARGLQFDFVDFLVRVGMSFDRHGGATGVVVQIEYRPCSYTADCERLIAELMERIAAPLVPPPQANHDPGISAAATTSYNYTRVDVDATKFNDKDLMPFSHRTEALLFAKLLR 211          
BLAST of Ggra1559.t1 vs. uniprot
Match: A0A7S3A9S3 (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9S3_9RHOD)

HSP 1 Score: 138 bits (348), Expect = 2.240e-37
Identity = 78/211 (36.97%), Postives = 117/211 (55.45%), Query Frame = 0
Query:    1 MGAKCVYNIS-TEGTSPAMVQREIIRRIEAHTGRKSTTWQVNVSIHATPDKKRPTLELVTLPDVANRMYIISQPLVTEAEPEILRMLGRMSTYVPKVTLSARGWEYDFVDFSVRVGMSFDRHGGATGVVVQIEYQPCSYTADCESLIAELMERIAAPLVPPPQANSDPGISAAATTAYNYNRIEIDSKKFTEKDLVPFSHRTEALLFARLL 210
            MGAKC++ I   E  + A V +E+ RR+EAHTGR+   WQV+   + +    RP + + T  +   + Y ++     E +  +  +L ++    P  +   +G EYD VDF+VRVGM F++  G T  VV+I Y PCS   +C  LI ELM++IAAPLV P  +  D   +AAA T Y +  +  D +K       PFS R  A+L++ +L
Sbjct:    1 MGAKCLFRIQINEYYNSAQVHKELQRRVEAHTGRRVGPWQVSAQQYGSKGNVRPPVVVFTTSEEPEKRYFLTGKHAIETDDGLSALLSKIPALTPTQSFMVKGIEYDLVDFTVRVGMVFEK-SGPTSNVVEIGYLPCSIVDNCVGLITELMDKIAAPLVAPQDSRQDSQANAAAETNYEFRLVPDDFQKVEGLANTPFSMRHTAMLYSAML 210          
BLAST of Ggra1559.t1 vs. uniprot
Match: A0A7S1ESA9 (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESA9_9RHOD)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-14
Identity = 60/195 (30.77%), Postives = 92/195 (47.18%), Query Frame = 0
Query:    1 MGAKCVYNISTEGTSPAMVQREIIRRIEAHTGRK------------------STTWQVNVSIHATPDKKR------PTLELVTLPDVANRMYIIS-QPL-----VTEAEPEILRMLGRMSTYVPKVTLSARGWEYDFVDFSVRVGMSFDRHGGATGVVVQIEYQPCSYTADCESLIAELMERIAAPLVPPPQANS 165
            MG +CVY +S E      +++EI+RRIEAH+GR+                  +T  Q+  S   TP            L  +TL +   ++++ +  P      +  A  E+  +L R+S    K   S  G  YD  DF++RV +  D+   A GVV+ +EY  C   A+C  L+ EL+ R+ APLV  P  N+
Sbjct:    1 MGVRCVYRLSVESYDATALEKEILRRIEAHSGRRKSGTCKASFTQFAFGTTVATQSQLPPSTDNTPISSTLKTGILQGLYELTLSEAPRQIFLFALHPTARAVQLLHASSEMHALLPRISNVSEKHKKSTFGMLYDLADFTLRVCLLMDK-SKAMGVVLDVEYGACDSLAECFELLDELVSRLCAPLVAAPPLNN 194          
BLAST of Ggra1559.t1 vs. uniprot
Match: A0A1Y1YBK9 (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YBK9_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 2.220e-6
Identity = 45/198 (22.73%), Postives = 90/198 (45.45%), Query Frame = 0
Query:    1 MGAKCV--YNISTEGTSPAMVQREIIRRIEAHTGRKSTTWQVNVSIH--ATPDKKRPT---LELVTLPDVANRMYIISQPLVTEAEPEILRMLGRMST-YVPKVTLSARGWEYDFVDFSVRVGMSFDRHGGATGVVVQIEYQPCSYTADCESLIAELMERIAAPLVPPPQANSDPGISAAATTAYNYNRIEIDSKKFT 190
            MG  CV  +  +    S  M+Q  I++    + G+ S  W ++  ++    P  K  T   L LV      + ++ +   ++ EA+ E+  ++ ++   +V +  L   G+ +D  DF +R G +        G++++IEY+PCS    C  + +E ++ +    +PP       G   +  T Y Y  + + S+ F+
Sbjct:    1 MGVTCVLRWTDANGAQSLNMLQERIVK---VYHGKISGRWNLSCKVYRDTNPINKMGTGKLLYLVYHSSYPSSVFSMIDGVIVEADRELDFIVNKLKNIWVTRQNLQVEGYSFDIGDFVLRAG-NIMVGSSYKGMMIEIEYKPCSIPTQCNDIFSEFLQNV----IPP-------GAKYSLETDYKYESVGLSSETFS 183          
The following BLAST results are available for this feature:
BLAST of Ggra1559.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J0T11.200e-11475.83Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3A9S32.240e-3736.97Mediator of RNA polymerase II transcription subuni... [more]
A0A7S1ESA92.920e-1430.77Mediator of RNA polymerase II transcription subuni... [more]
A0A1Y1YBK92.220e-622.73Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 21..155
e-value: 1.4E-9
score: 37.7
IPR013921Mediator complex, subunit Med20PANTHERPTHR12465UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49coord: 16..154
NoneNo IPR availablePANTHERPTHR12465:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20coord: 16..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:460115..460817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1559.t1Ggra1559.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 460115..460817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1559.t1 ID=Ggra1559.t1|Name=Ggra1559.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MGAKCVYNISTEGTSPAMVQREIIRRIEAHTGRKSTTWQVNVSIHATPDK
KRPTLELVTLPDVANRMYIISQPLVTEAEPEILRMLGRMSTYVPKVTLSA
RGWEYDFVDFSVRVGMSFDRHGGATGVVVQIEYQPCSYTADCESLIAELM
ERIAAPLVPPPQANSDPGISAAATTAYNYNRIEIDSKKFTEKDLVPFSHR
TEALLFARLLRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20