Ggra1559.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1559.t1
Unique NameGgra1559.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:460115..460817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog57918.XP_004287621.1
PFAMsMed20
Max annot lvl35493|Streptophyta
KEGG koko:K13528
GOsGO:0002831,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023051,GO:0031047,GO:0031050,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031974,GO:0031981,GO:0032101,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043900,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097659,GO:0140110,GO:1900150,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000031,GO:2000112,GO:2001023,GO:2001038,GO:2001141
Evalue7.69e-09
EggNOG OGsCOG0076@1|root,KOG1383@2759|Eukaryota,37PK6@33090|Viridiplantae,3GEZ3@35493|Streptophyta,4JI2T@91835|fabids
Descriptionmediator of RNA polymerase II transcription subunit
COG categoryE
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1559Ggra1559Gracilaria gracilis GNS1m malegenetig00000844_pilon 460115..460817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1559.t1Ggra1559.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 460115..460817 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1559.t1.stop1Ggra1559.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 460115..460117 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1559.t1.CDS1Ggra1559.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 460115..460739 -
Ggra1559.t1.CDS2Ggra1559.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 460804..460817 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1559.t1.exon1Ggra1559.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 460115..460739 -
Ggra1559.t1.exon2Ggra1559.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 460804..460817 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1559.t1.intron1Ggra1559.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 460740..460803 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1559.t1.start1Ggra1559.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 460815..460817 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1559.t1 ID=Ggra1559.t1|Name=Ggra1559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MGAKCVYNISTEGTSPAMVQREIIRRIEAHTGRKSTTWQVNVSIHATPDK
KRPTLELVTLPDVANRMYIISQPLVTEAEPEILRMLGRMSTYVPKVTLSA
RGWEYDFVDFSVRVGMSFDRHGGATGVVVQIEYQPCSYTADCESLIAELM
ERIAAPLVPPPQANSDPGISAAATTAYNYNRIEIDSKKFTEKDLVPFSHR
TEALLFARLLRP*
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spliced messenger RNA

>Ggra1559.t1 ID=Ggra1559.t1|Name=Ggra1559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000844_pilon:460115..460817- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCCAAATGCGTTTACAACATTTCAACAGAGGGCACTTCGCCCGC
GATGGTGCAGCGCGAAATCATCCGTCGCATCGAAGCACATACTGGACGCA
AGTCTACCACATGGCAAGTGAACGTCTCCATCCACGCCACACCCGACAAG
AAGAGACCCACCTTAGAACTCGTCACGCTTCCAGACGTGGCCAATCGCAT
GTACATCATCTCACAACCCTTGGTAACGGAAGCCGAGCCCGAGATCCTTA
GAATGTTAGGTCGCATGTCCACATACGTGCCAAAGGTAACCCTCTCTGCA
CGCGGCTGGGAGTACGATTTCGTCGACTTTTCTGTGCGAGTAGGCATGTC
ATTCGATCGACATGGCGGAGCGACTGGCGTGGTGGTTCAAATTGAGTATC
AACCTTGTTCTTATACGGCCGACTGCGAGTCACTGATTGCCGAGCTTATG
GAACGCATTGCCGCCCCACTCGTACCTCCTCCGCAAGCAAACAGTGATCC
TGGCATAAGTGCCGCCGCTACTACTGCTTATAACTACAACAGAATTGAAA
TCGACAGCAAGAAGTTCACTGAAAAGGATCTGGTGCCGTTTTCGCATAGA
ACGGAGGCTTTGCTGTTTGCAAGGCTGCTCAGACCATAG
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protein sequence of Ggra1559.t1

>Ggra1559.t1 ID=Ggra1559.t1|Name=Ggra1559.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MGAKCVYNISTEGTSPAMVQREIIRRIEAHTGRKSTTWQVNVSIHATPDK
KRPTLELVTLPDVANRMYIISQPLVTEAEPEILRMLGRMSTYVPKVTLSA
RGWEYDFVDFSVRVGMSFDRHGGATGVVVQIEYQPCSYTADCESLIAELM
ERIAAPLVPPPQANSDPGISAAATTAYNYNRIEIDSKKFTEKDLVPFSHR
TEALLFARLLRP*
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mRNA from alignment at tig00000844_pilon:460115..460817-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1559.t1 ID=Ggra1559.t1|Name=Ggra1559.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=703bp|location=Sequence derived from alignment at tig00000844_pilon:460115..460817- (Gracilaria gracilis GNS1m male)
ATGGGAGCCAAATGGTAAGTTCTCCCTATCCTTTCAAGCATGAATCTTCA
ACATCCGCTCTGACAACGTTCGCCGCAGCGTTTACAACATTTCAACAGAG
GGCACTTCGCCCGCGATGGTGCAGCGCGAAATCATCCGTCGCATCGAAGC
ACATACTGGACGCAAGTCTACCACATGGCAAGTGAACGTCTCCATCCACG
CCACACCCGACAAGAAGAGACCCACCTTAGAACTCGTCACGCTTCCAGAC
GTGGCCAATCGCATGTACATCATCTCACAACCCTTGGTAACGGAAGCCGA
GCCCGAGATCCTTAGAATGTTAGGTCGCATGTCCACATACGTGCCAAAGG
TAACCCTCTCTGCACGCGGCTGGGAGTACGATTTCGTCGACTTTTCTGTG
CGAGTAGGCATGTCATTCGATCGACATGGCGGAGCGACTGGCGTGGTGGT
TCAAATTGAGTATCAACCTTGTTCTTATACGGCCGACTGCGAGTCACTGA
TTGCCGAGCTTATGGAACGCATTGCCGCCCCACTCGTACCTCCTCCGCAA
GCAAACAGTGATCCTGGCATAAGTGCCGCCGCTACTACTGCTTATAACTA
CAACAGAATTGAAATCGACAGCAAGAAGTTCACTGAAAAGGATCTGGTGC
CGTTTTCGCATAGAACGGAGGCTTTGCTGTTTGCAAGGCTGCTCAGACCA
TAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:460115..460817-

>Ggra1559.t1 ID=Ggra1559.t1|Name=Ggra1559.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000844_pilon:460115..460817- (Gracilaria gracilis GNS1m male)
ATGGGAGCCAAATGCGTTTACAACATTTCAACAGAGGGCACTTCGCCCGC
GATGGTGCAGCGCGAAATCATCCGTCGCATCGAAGCACATACTGGACGCA
AGTCTACCACATGGCAAGTGAACGTCTCCATCCACGCCACACCCGACAAG
AAGAGACCCACCTTAGAACTCGTCACGCTTCCAGACGTGGCCAATCGCAT
GTACATCATCTCACAACCCTTGGTAACGGAAGCCGAGCCCGAGATCCTTA
GAATGTTAGGTCGCATGTCCACATACGTGCCAAAGGTAACCCTCTCTGCA
CGCGGCTGGGAGTACGATTTCGTCGACTTTTCTGTGCGAGTAGGCATGTC
ATTCGATCGACATGGCGGAGCGACTGGCGTGGTGGTTCAAATTGAGTATC
AACCTTGTTCTTATACGGCCGACTGCGAGTCACTGATTGCCGAGCTTATG
GAACGCATTGCCGCCCCACTCGTACCTCCTCCGCAAGCAAACAGTGATCC
TGGCATAAGTGCCGCCGCTACTACTGCTTATAACTACAACAGAATTGAAA
TCGACAGCAAGAAGTTCACTGAAAAGGATCTGGTGCCGTTTTCGCATAGA
ACGGAGGCTTTGCTGTTTGCAAGGCTGCTCAGACCATAG
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