Ggra1509.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1509.t1
Unique Name	Ggra1509.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	422

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:282471..283736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1509	Ggra1509	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 282471..283736 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1509.t1.start1	Ggra1509.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 282471..282473 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1509.t1.CDS1	Ggra1509.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 282471..283736 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1509.t1.exon1	Ggra1509.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 282471..283736 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1509.t1.stop1	Ggra1509.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 283734..283736 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1509.t1	Ggra1509.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 282471..283736 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:282471..283736+
coding sequence from alignment at tig00000844_pilon:282471..283736+

mRNA sequence

>Ggra1509.t1 ID=Ggra1509.t1|Name=Ggra1509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=422bp
MALGGAARPLLVPAADVLAKNWRTYDGSHGNREGARAQPSSSSTLFMSID
AITESDAGARNSLVRFRAAKPDSKPNPIALLFARLFSGAGKAQSSDEPHA
PDKSPLLAKLHKLWPPLEKASAIASRLPDPTVLFLALVLAVLLINRYRPH
WFQSILVKIAVILSFLPLFALALLWRKTELFAQLREGRNPLSHPAEHMLD
DLEAELKAREDNVKKAQNTLNANRSKLDALRKELAKDPNAADANAIIVPS
RKAASMIAAGALGAGYDAEAAHAVEARRREESVKKSREEWLQKAEEVENN
AGQTEESVKLLQHHASTAYSKRTREIKTRSASGRPSERLRALKKAPFSSL
SNRQTADDGGSPVERLSERTATSNAHSTASSRRWSLFRRRRRRTTVSSPD
GGAMSLTSTPRITAESADDRR*

spliced messenger RNA

>Ggra1509.t1 ID=Ggra1509.t1|Name=Ggra1509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000844_pilon:282471..283736+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTGGCGGCGCGGCGCGCCCGTTGTTGGTCCCCGCTGCTGACGT
GCTCGCTAAGAACTGGCGCACGTACGATGGCTCTCACGGAAATCGTGAAG
GCGCGCGTGCGCAGCCATCTTCGTCCTCCACGCTGTTCATGAGCATTGAT
GCCATCACTGAGAGCGACGCGGGCGCGCGCAACTCCCTGGTGCGCTTCCG
AGCCGCCAAGCCCGATTCGAAGCCCAATCCAATCGCGCTCTTGTTCGCGC
GTCTGTTCTCCGGCGCCGGCAAGGCGCAGTCGTCTGACGAGCCTCACGCG
CCTGACAAATCGCCGCTGCTTGCAAAGTTGCACAAATTGTGGCCCCCGCT
GGAGAAGGCATCTGCGATTGCGTCCAGATTACCGGACCCTACCGTTCTGT
TTCTTGCATTGGTGCTCGCCGTGCTACTCATCAACCGATATCGTCCGCAC
TGGTTTCAGTCTATCCTCGTCAAGATTGCGGTCATTCTGTCCTTTCTGCC
GTTGTTTGCGCTTGCGCTGCTGTGGCGAAAGACCGAGCTGTTCGCTCAGC
TCCGAGAGGGTCGGAATCCGCTCTCACACCCAGCCGAGCACATGCTGGAC
GACCTGGAAGCCGAGCTCAAAGCGCGTGAAGACAATGTCAAAAAGGCGCA
GAACACGCTCAACGCCAACCGCTCCAAGCTGGACGCGCTACGAAAGGAGC
TGGCAAAGGATCCCAACGCCGCCGATGCGAACGCCATCATTGTGCCGTCG
CGAAAGGCAGCCTCTATGATTGCGGCCGGTGCGCTGGGTGCGGGGTATGA
CGCGGAGGCGGCGCATGCGGTGGAGGCGCGTCGCCGAGAGGAGAGTGTAA
AGAAGAGTCGTGAGGAGTGGCTACAAAAGGCGGAGGAGGTTGAAAATAAT
GCGGGGCAGACAGAGGAAAGCGTCAAACTGTTACAACATCATGCCAGTAC
TGCGTACTCCAAACGCACGCGCGAAATTAAGACGCGCTCTGCGTCGGGCC
GACCGAGCGAGAGGCTGAGGGCGTTGAAGAAGGCGCCGTTTAGTAGTCTT
TCCAATCGACAGACGGCGGATGATGGTGGCTCGCCCGTGGAAAGGTTGAG
CGAACGTACAGCCACGAGTAATGCTCACTCGACGGCGAGCAGCAGAAGGT
GGAGCCTGTTCCGAAGGAGGCGTAGGAGGACCACTGTGTCTAGTCCGGAT
GGCGGTGCAATGTCGCTGACGTCGACGCCTCGCATCACGGCGGAGTCGGC
TGACGACCGTCGTTGA

protein sequence of Ggra1509.t1

>Ggra1509.t1 ID=Ggra1509.t1|Name=Ggra1509.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=422bp
MALGGAARPLLVPAADVLAKNWRTYDGSHGNREGARAQPSSSSTLFMSID
AITESDAGARNSLVRFRAAKPDSKPNPIALLFARLFSGAGKAQSSDEPHA
PDKSPLLAKLHKLWPPLEKASAIASRLPDPTVLFLALVLAVLLINRYRPH
WFQSILVKIAVILSFLPLFALALLWRKTELFAQLREGRNPLSHPAEHMLD
DLEAELKAREDNVKKAQNTLNANRSKLDALRKELAKDPNAADANAIIVPS
RKAASMIAAGALGAGYDAEAAHAVEARRREESVKKSREEWLQKAEEVENN
AGQTEESVKLLQHHASTAYSKRTREIKTRSASGRPSERLRALKKAPFSSL
SNRQTADDGGSPVERLSERTATSNAHSTASSRRWSLFRRRRRRTTVSSPD
GGAMSLTSTPRITAESADDRR*

mRNA from alignment at tig00000844_pilon:282471..283736+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1509.t1 ID=Ggra1509.t1|Name=Ggra1509.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00000844_pilon:282471..283736+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTGGCGGCGCGGCGCGCCCGTTGTTGGTCCCCGCTGCTGACGT
GCTCGCTAAGAACTGGCGCACGTACGATGGCTCTCACGGAAATCGTGAAG
GCGCGCGTGCGCAGCCATCTTCGTCCTCCACGCTGTTCATGAGCATTGAT
GCCATCACTGAGAGCGACGCGGGCGCGCGCAACTCCCTGGTGCGCTTCCG
AGCCGCCAAGCCCGATTCGAAGCCCAATCCAATCGCGCTCTTGTTCGCGC
GTCTGTTCTCCGGCGCCGGCAAGGCGCAGTCGTCTGACGAGCCTCACGCG
CCTGACAAATCGCCGCTGCTTGCAAAGTTGCACAAATTGTGGCCCCCGCT
GGAGAAGGCATCTGCGATTGCGTCCAGATTACCGGACCCTACCGTTCTGT
TTCTTGCATTGGTGCTCGCCGTGCTACTCATCAACCGATATCGTCCGCAC
TGGTTTCAGTCTATCCTCGTCAAGATTGCGGTCATTCTGTCCTTTCTGCC
GTTGTTTGCGCTTGCGCTGCTGTGGCGAAAGACCGAGCTGTTCGCTCAGC
TCCGAGAGGGTCGGAATCCGCTCTCACACCCAGCCGAGCACATGCTGGAC
GACCTGGAAGCCGAGCTCAAAGCGCGTGAAGACAATGTCAAAAAGGCGCA
GAACACGCTCAACGCCAACCGCTCCAAGCTGGACGCGCTACGAAAGGAGC
TGGCAAAGGATCCCAACGCCGCCGATGCGAACGCCATCATTGTGCCGTCG
CGAAAGGCAGCCTCTATGATTGCGGCCGGTGCGCTGGGTGCGGGGTATGA
CGCGGAGGCGGCGCATGCGGTGGAGGCGCGTCGCCGAGAGGAGAGTGTAA
AGAAGAGTCGTGAGGAGTGGCTACAAAAGGCGGAGGAGGTTGAAAATAAT
GCGGGGCAGACAGAGGAAAGCGTCAAACTGTTACAACATCATGCCAGTAC
TGCGTACTCCAAACGCACGCGCGAAATTAAGACGCGCTCTGCGTCGGGCC
GACCGAGCGAGAGGCTGAGGGCGTTGAAGAAGGCGCCGTTTAGTAGTCTT
TCCAATCGACAGACGGCGGATGATGGTGGCTCGCCCGTGGAAAGGTTGAG
CGAACGTACAGCCACGAGTAATGCTCACTCGACGGCGAGCAGCAGAAGGT
GGAGCCTGTTCCGAAGGAGGCGTAGGAGGACCACTGTGTCTAGTCCGGAT
GGCGGTGCAATGTCGCTGACGTCGACGCCTCGCATCACGGCGGAGTCGGC
TGACGACCGTCGTTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:282471..283736+

>Ggra1509.t1 ID=Ggra1509.t1|Name=Ggra1509.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00000844_pilon:282471..283736+ (Gracilaria gracilis GNS1m male)
ATGGCGCTTGGCGGCGCGGCGCGCCCGTTGTTGGTCCCCGCTGCTGACGT
GCTCGCTAAGAACTGGCGCACGTACGATGGCTCTCACGGAAATCGTGAAG
GCGCGCGTGCGCAGCCATCTTCGTCCTCCACGCTGTTCATGAGCATTGAT
GCCATCACTGAGAGCGACGCGGGCGCGCGCAACTCCCTGGTGCGCTTCCG
AGCCGCCAAGCCCGATTCGAAGCCCAATCCAATCGCGCTCTTGTTCGCGC
GTCTGTTCTCCGGCGCCGGCAAGGCGCAGTCGTCTGACGAGCCTCACGCG
CCTGACAAATCGCCGCTGCTTGCAAAGTTGCACAAATTGTGGCCCCCGCT
GGAGAAGGCATCTGCGATTGCGTCCAGATTACCGGACCCTACCGTTCTGT
TTCTTGCATTGGTGCTCGCCGTGCTACTCATCAACCGATATCGTCCGCAC
TGGTTTCAGTCTATCCTCGTCAAGATTGCGGTCATTCTGTCCTTTCTGCC
GTTGTTTGCGCTTGCGCTGCTGTGGCGAAAGACCGAGCTGTTCGCTCAGC
TCCGAGAGGGTCGGAATCCGCTCTCACACCCAGCCGAGCACATGCTGGAC
GACCTGGAAGCCGAGCTCAAAGCGCGTGAAGACAATGTCAAAAAGGCGCA
GAACACGCTCAACGCCAACCGCTCCAAGCTGGACGCGCTACGAAAGGAGC
TGGCAAAGGATCCCAACGCCGCCGATGCGAACGCCATCATTGTGCCGTCG
CGAAAGGCAGCCTCTATGATTGCGGCCGGTGCGCTGGGTGCGGGGTATGA
CGCGGAGGCGGCGCATGCGGTGGAGGCGCGTCGCCGAGAGGAGAGTGTAA
AGAAGAGTCGTGAGGAGTGGCTACAAAAGGCGGAGGAGGTTGAAAATAAT
GCGGGGCAGACAGAGGAAAGCGTCAAACTGTTACAACATCATGCCAGTAC
TGCGTACTCCAAACGCACGCGCGAAATTAAGACGCGCTCTGCGTCGGGCC
GACCGAGCGAGAGGCTGAGGGCGTTGAAGAAGGCGCCGTTTAGTAGTCTT
TCCAATCGACAGACGGCGGATGATGGTGGCTCGCCCGTGGAAAGGTTGAG
CGAACGTACAGCCACGAGTAATGCTCACTCGACGGCGAGCAGCAGAAGGT
GGAGCCTGTTCCGAAGGAGGCGTAGGAGGACCACTGTGTCTAGTCCGGAT
GGCGGTGCAATGTCGCTGACGTCGACGCCTCGCATCACGGCGGAGTCGGC
TGACGACCGTCGTTGA