Ggra5642.t1 (polypeptide) Gracilaria gracilis GNS1m male
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Overview
Homology
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A2V3IL77 (DNA-directed RNA polymerase II subunit rpb11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL77_9FLOR) HSP 1 Score: 212 bits (539), Expect = 2.770e-69 Identity = 97/115 (84.35%), Postives = 112/115 (97.39%), Query Frame = 0
Query: 1 MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAKRNR 115
MTNAPEN+++W+LP+GVEKV+Y DTKIENCGVFRLEREDHTLANLLRMQLIRDPDV+FVGYKHPHPLDHHIELRVQTS++TRAGKY+PPEAVR+ALMDLS+E+SRL ELA+R+R
Sbjct: 1 MTNAPENYEAWVLPDGVEKVSYVPDTKIENCGVFRLEREDHTLANLLRMQLIRDPDVLFVGYKHPHPLDHHIELRVQTSTNTRAGKYMPPEAVRVALMDLSAEISRLAELARRSR 115
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A1X6PCJ2 (RNA_pol_L_2 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCJ2_PORUM) HSP 1 Score: 129 bits (323), Expect = 3.540e-36 Identity = 59/113 (52.21%), Postives = 82/113 (72.57%), Query Frame = 0
Query: 1 MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGK----YLPPEAVRMALMDLSSEVSRLTE 109
M+NAP++F + +LP+GV+K++Y D KIEN G +EREDHTL NL+RMQL+RDP V +V YK PHPL+HHI +RV T S G YLP +A+ AL DL++E++ ++E
Sbjct: 1 MSNAPDHFAAVVLPDGVQKLSYERDIKIENAGTLSIEREDHTLGNLVRMQLLRDPKVTYVAYKQPHPLEHHIVIRVHTQQSRTVGDGAPPYLPTDAIATALEDLNAEINLISE 113
BLAST of Ggra5642.t1 vs. uniprot
Match: R7QB84 (RNA_pol_L_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB84_CHOCR) HSP 1 Score: 125 bits (313), Expect = 1.010e-34 Identity = 57/93 (61.29%), Postives = 74/93 (79.57%), Query Frame = 0
Query: 18 EKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAG-KYLPPEAVRMALMDLSSEVSRLTE 109
+++ Y DTK+ N G F+LEREDHT+ NL+RMQL+RDPDV+FVGYKHPHP +HHI LRVQT++ G YLPP+A + AL DL++EVS L+E
Sbjct: 28 KRLEYVQDTKLYNSGTFKLEREDHTMGNLIRMQLMRDPDVIFVGYKHPHPYEHHILLRVQTTTRPSVGGTYLPPDAFKTALQDLAAEVSTLSE 120
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A7S1XH81 (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XH81_9RHOD) HSP 1 Score: 123 bits (308), Expect = 5.810e-34 Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 0
Query: 1 MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAK 112
M NAPE FD+ +LP+ V K++ D K+ N ++EREDHT+ NLLRMQL+RDPDV++ GY+HPHPL HHI LRVQT + + P +A+ A+ DL SE+S L E K
Sbjct: 1 MANAPERFDAVVLPDNVAKISMEVDNKLVNAVTLKIEREDHTIGNLLRMQLLRDPDVIYAGYRHPHPLTHHILLRVQTKAGLDSDS--PVKAITTAMQDLRSELSLLDERFK 110
BLAST of Ggra5642.t1 vs. uniprot
Match: K3WVN9 (RNA_pol_L_2 domain-containing protein n=2 Tax=Oomycota TaxID=4762 RepID=K3WVN9_GLOUD) HSP 1 Score: 120 bits (300), Expect = 7.530e-33 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 0
Query: 3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAKR 113
NAP DS++LPEG +KVTY DTKI+N G F + REDHT+ NL+RMQL+RDP+V F GY+HPHPL H I +RVQT+ ++ P EA+ L DLS+E + + +R
Sbjct: 2 NAPNRTDSYMLPEGAQKVTYEKDTKIQNAGKFTVLREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITIRVQTNDASS-----PVEALANCLDDLSTEFDEIAQKFRR 107
BLAST of Ggra5642.t1 vs. uniprot
Match: M4BF90 (RNA_pol_L_2 domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=M4BF90_HYAAE) HSP 1 Score: 119 bits (297), Expect = 2.150e-32 Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 0
Query: 3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAKR 113
NAP D+++LPEG +KVTY DTKI N G F + REDHT+ NL+RMQL+RDP+V F GY+HPHPL H I +RVQT+ ++ P EA+ +L DLS+E + + +R
Sbjct: 2 NAPNRSDAYLLPEGAQKVTYEKDTKISNAGKFTILREDHTIGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQTNDASS-----PVEALANSLDDLSTEFDEIAQKFRR 107
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A7S4STF0 (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4STF0_9STRA) HSP 1 Score: 118 bits (296), Expect = 6.910e-32 Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = 0
Query: 3 NAPENFDSWILPE--GVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLT 108
NAPE +++L E G K+TY ADTK+ N G F +EDHT+ANLLRMQL+RDP V FVGY HPHPL H I++R+QTSSST A P E + AL DL++E LT
Sbjct: 23 NAPERSAAFLLDEDNGEVKITYAADTKVSNAGTFTFNKEDHTIANLLRMQLLRDPRVRFVGYMHPHPLIHRIDMRIQTSSSTVA----PVEVLSAALEDLANETDHLT 126
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A090N3T6 (DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N3T6_OSTTA) HSP 1 Score: 117 bits (292), Expect = 1.100e-31 Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 0
Query: 3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTE 109
N P D ++LP+G KVTY DTK+EN G F ++REDHTLANLLRM+L ++PDVVF GYK+PHP DH + L+V T+++T P +A+R A+ +L +EVS + +
Sbjct: 2 NQPSRADRFVLPDGERKVTYERDTKVENAGTFVIQREDHTLANLLRMELHKNPDVVFAGYKNPHPTDHRVILKVHTNANTT-----PVQALRDAVTNLRAEVSDIAQ 103
BLAST of Ggra5642.t1 vs. uniprot
Match: F2U1F2 (DNA-directed RNA polymerase II subunit J n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U1F2_SALR5) HSP 1 Score: 119 bits (297), Expect = 2.230e-31 Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 0
Query: 3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLT 108
NAPE FD +L G +KVTYT DTK+ N G FR+ REDHTL N+L QL RDP V+F GY+ PHPL+HH+ LR+QT+ Y P EA++ AL D ++++R+T
Sbjct: 2 NAPETFDRILLAPGEQKVTYTPDTKVPNAGTFRINREDHTLGNMLASQLRRDPRVLFSGYRCPHPLEHHLLLRIQTTPD-----YSPKEALKTALADCRADITRMT 102
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A6P4YKI8 (DNA-directed RNA polymerase II subunit RPB11-a isoform X1 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YKI8_BRABE) HSP 1 Score: 115 bits (287), Expect = 6.510e-31 Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 0
Query: 3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAK 112
NAP F+S++L EG +K+T T DTK+ N +F + +EDHTL NLLR QL++DP V+F GYK PHPL+H LRVQT+ Y P EA A+ DL SEVS L E K
Sbjct: 2 NAPPTFESFLLFEGEKKITITKDTKVPNAAIFTVNKEDHTLGNLLRAQLLKDPQVIFAGYKVPHPLEHKFVLRVQTTPD-----YSPQEAFTNAITDLISEVSLLEERFK 106 The following BLAST results are available for this feature:
BLAST of Ggra5642.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Ggra5642.t1 ID=Ggra5642.t1|Name=Ggra5642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bpback to top |