Ggra5642.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5642.t1
Unique NameGgra5642.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length116
Homology
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A2V3IL77 (DNA-directed RNA polymerase II subunit rpb11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL77_9FLOR)

HSP 1 Score: 212 bits (539), Expect = 2.770e-69
Identity = 97/115 (84.35%), Postives = 112/115 (97.39%), Query Frame = 0
Query:    1 MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAKRNR 115
            MTNAPEN+++W+LP+GVEKV+Y  DTKIENCGVFRLEREDHTLANLLRMQLIRDPDV+FVGYKHPHPLDHHIELRVQTS++TRAGKY+PPEAVR+ALMDLS+E+SRL ELA+R+R
Sbjct:    1 MTNAPENYEAWVLPDGVEKVSYVPDTKIENCGVFRLEREDHTLANLLRMQLIRDPDVLFVGYKHPHPLDHHIELRVQTSTNTRAGKYMPPEAVRVALMDLSAEISRLAELARRSR 115          
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A1X6PCJ2 (RNA_pol_L_2 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCJ2_PORUM)

HSP 1 Score: 129 bits (323), Expect = 3.540e-36
Identity = 59/113 (52.21%), Postives = 82/113 (72.57%), Query Frame = 0
Query:    1 MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGK----YLPPEAVRMALMDLSSEVSRLTE 109
            M+NAP++F + +LP+GV+K++Y  D KIEN G   +EREDHTL NL+RMQL+RDP V +V YK PHPL+HHI +RV T  S   G     YLP +A+  AL DL++E++ ++E
Sbjct:    1 MSNAPDHFAAVVLPDGVQKLSYERDIKIENAGTLSIEREDHTLGNLVRMQLLRDPKVTYVAYKQPHPLEHHIVIRVHTQQSRTVGDGAPPYLPTDAIATALEDLNAEINLISE 113          
BLAST of Ggra5642.t1 vs. uniprot
Match: R7QB84 (RNA_pol_L_2 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB84_CHOCR)

HSP 1 Score: 125 bits (313), Expect = 1.010e-34
Identity = 57/93 (61.29%), Postives = 74/93 (79.57%), Query Frame = 0
Query:   18 EKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAG-KYLPPEAVRMALMDLSSEVSRLTE 109
            +++ Y  DTK+ N G F+LEREDHT+ NL+RMQL+RDPDV+FVGYKHPHP +HHI LRVQT++    G  YLPP+A + AL DL++EVS L+E
Sbjct:   28 KRLEYVQDTKLYNSGTFKLEREDHTMGNLIRMQLMRDPDVIFVGYKHPHPYEHHILLRVQTTTRPSVGGTYLPPDAFKTALQDLAAEVSTLSE 120          
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A7S1XH81 (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XH81_9RHOD)

HSP 1 Score: 123 bits (308), Expect = 5.810e-34
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 0
Query:    1 MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAK 112
            M NAPE FD+ +LP+ V K++   D K+ N    ++EREDHT+ NLLRMQL+RDPDV++ GY+HPHPL HHI LRVQT +   +    P +A+  A+ DL SE+S L E  K
Sbjct:    1 MANAPERFDAVVLPDNVAKISMEVDNKLVNAVTLKIEREDHTIGNLLRMQLLRDPDVIYAGYRHPHPLTHHILLRVQTKAGLDSDS--PVKAITTAMQDLRSELSLLDERFK 110          
BLAST of Ggra5642.t1 vs. uniprot
Match: K3WVN9 (RNA_pol_L_2 domain-containing protein n=2 Tax=Oomycota TaxID=4762 RepID=K3WVN9_GLOUD)

HSP 1 Score: 120 bits (300), Expect = 7.530e-33
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAKR 113
            NAP   DS++LPEG +KVTY  DTKI+N G F + REDHT+ NL+RMQL+RDP+V F GY+HPHPL H I +RVQT+ ++      P EA+   L DLS+E   + +  +R
Sbjct:    2 NAPNRTDSYMLPEGAQKVTYEKDTKIQNAGKFTVLREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITIRVQTNDASS-----PVEALANCLDDLSTEFDEIAQKFRR 107          
BLAST of Ggra5642.t1 vs. uniprot
Match: M4BF90 (RNA_pol_L_2 domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=M4BF90_HYAAE)

HSP 1 Score: 119 bits (297), Expect = 2.150e-32
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAKR 113
            NAP   D+++LPEG +KVTY  DTKI N G F + REDHT+ NL+RMQL+RDP+V F GY+HPHPL H I +RVQT+ ++      P EA+  +L DLS+E   + +  +R
Sbjct:    2 NAPNRSDAYLLPEGAQKVTYEKDTKISNAGKFTILREDHTIGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQTNDASS-----PVEALANSLDDLSTEFDEIAQKFRR 107          
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A7S4STF0 (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4STF0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.910e-32
Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = 0
Query:    3 NAPENFDSWILPE--GVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLT 108
            NAPE   +++L E  G  K+TY ADTK+ N G F   +EDHT+ANLLRMQL+RDP V FVGY HPHPL H I++R+QTSSST A    P E +  AL DL++E   LT
Sbjct:   23 NAPERSAAFLLDEDNGEVKITYAADTKVSNAGTFTFNKEDHTIANLLRMQLLRDPRVRFVGYMHPHPLIHRIDMRIQTSSSTVA----PVEVLSAALEDLANETDHLT 126          
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A090N3T6 (DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N3T6_OSTTA)

HSP 1 Score: 117 bits (292), Expect = 1.100e-31
Identity = 55/107 (51.40%), Postives = 77/107 (71.96%), Query Frame = 0
Query:    3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTE 109
            N P   D ++LP+G  KVTY  DTK+EN G F ++REDHTLANLLRM+L ++PDVVF GYK+PHP DH + L+V T+++T      P +A+R A+ +L +EVS + +
Sbjct:    2 NQPSRADRFVLPDGERKVTYERDTKVENAGTFVIQREDHTLANLLRMELHKNPDVVFAGYKNPHPTDHRVILKVHTNANTT-----PVQALRDAVTNLRAEVSDIAQ 103          
BLAST of Ggra5642.t1 vs. uniprot
Match: F2U1F2 (DNA-directed RNA polymerase II subunit J n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U1F2_SALR5)

HSP 1 Score: 119 bits (297), Expect = 2.230e-31
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 0
Query:    3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLT 108
            NAPE FD  +L  G +KVTYT DTK+ N G FR+ REDHTL N+L  QL RDP V+F GY+ PHPL+HH+ LR+QT+       Y P EA++ AL D  ++++R+T
Sbjct:    2 NAPETFDRILLAPGEQKVTYTPDTKVPNAGTFRINREDHTLGNMLASQLRRDPRVLFSGYRCPHPLEHHLLLRIQTTPD-----YSPKEALKTALADCRADITRMT 102          
BLAST of Ggra5642.t1 vs. uniprot
Match: A0A6P4YKI8 (DNA-directed RNA polymerase II subunit RPB11-a isoform X1 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YKI8_BRABE)

HSP 1 Score: 115 bits (287), Expect = 6.510e-31
Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 0
Query:    3 NAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQLIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDLSSEVSRLTELAK 112
            NAP  F+S++L EG +K+T T DTK+ N  +F + +EDHTL NLLR QL++DP V+F GYK PHPL+H   LRVQT+       Y P EA   A+ DL SEVS L E  K
Sbjct:    2 NAPPTFESFLLFEGEKKITITKDTKVPNAAIFTVNKEDHTLGNLLRAQLLKDPQVIFAGYKVPHPLEHKFVLRVQTTPD-----YSPQEAFTNAITDLISEVSLLEERFK 106          
The following BLAST results are available for this feature:
BLAST of Ggra5642.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IL772.770e-6984.35DNA-directed RNA polymerase II subunit rpb11 n=1 T... [more]
A0A1X6PCJ23.540e-3652.21RNA_pol_L_2 domain-containing protein n=1 Tax=Porp... [more]
R7QB841.010e-3461.29RNA_pol_L_2 domain-containing protein n=1 Tax=Chon... [more]
A0A7S1XH815.810e-3451.79Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
K3WVN97.530e-3352.25RNA_pol_L_2 domain-containing protein n=2 Tax=Oomy... [more]
M4BF902.150e-3251.35RNA_pol_L_2 domain-containing protein n=25 Tax=Oom... [more]
A0A7S4STF06.910e-3256.48Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A090N3T61.100e-3151.40DNA-directed RNA polymerase Rpb11, 13-16kDa subuni... [more]
F2U1F22.230e-3152.83DNA-directed RNA polymerase II subunit J n=1 Tax=S... [more]
A0A6P4YKI86.510e-3152.73DNA-directed RNA polymerase II subunit RPB11-a iso... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 2..115
e-value: 5.9E-35
score: 121.4
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 3..106
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 34..108
e-value: 1.5E-21
score: 75.9
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 3..109
NoneNo IPR availablePANTHERPTHR13946:SF16DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11coord: 3..109
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 36..67
IPR037685RNA polymerase RBP11CDDcd06926RNAP_II_RPB11coord: 14..107
e-value: 1.02118E-41
score: 130.79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1227595..1228017 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5642.t1Ggra5642.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1227595..1228017 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5642.t1 ID=Ggra5642.t1|Name=Ggra5642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bp
MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQ
LIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDL
SSEVSRLTELAKRNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR037685RBP11