Ggra5642.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5642.t1
Unique NameGgra5642.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1227595..1228017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.10756
PFAMsRNA_pol_L_2
Max annot lvl4776|Peronosporales
KEGG rclassRC02795
KEGG koko:K03008
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Evalue1.51e-33
EggNOG OGsCOG1761@1|root,KOG4392@2759|Eukaryota,3QFGX@4776|Peronosporales
DescriptionRNA polymerase Rpb3/Rpb11 dimerisation domain
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5642Ggra5642Gracilaria gracilis GNS1m malegenetig00000842_pilon 1227595..1228017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5642.t1Ggra5642.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1227595..1228017 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5642.t1.start1Ggra5642.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1227595..1227597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5642.t1.CDS1Ggra5642.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1227595..1227650 +
Ggra5642.t1.CDS2Ggra5642.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1227726..1228017 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5642.t1.exon1Ggra5642.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1227595..1227650 +
Ggra5642.t1.exon2Ggra5642.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1227726..1228017 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5642.t1.intron1Ggra5642.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1227651..1227725 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5642.t1.stop1Ggra5642.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1228015..1228017 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5642.t1 ID=Ggra5642.t1|Name=Ggra5642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=116bp
MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQ
LIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDL
SSEVSRLTELAKRNR*
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spliced messenger RNA

>Ggra5642.t1 ID=Ggra5642.t1|Name=Ggra5642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00000842_pilon:1227595..1228017+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAACGCGCCCGAAAATTTCGATTCATGGATTCTACCCGAAGGCGT
TGAAAAAGTTACCTACACAGCAGATACTAAGATTGAGAACTGCGGTGTAT
TCCGCCTGGAACGAGAAGACCATACGCTGGCAAATCTACTACGAATGCAG
CTTATACGAGATCCAGATGTAGTATTCGTCGGCTACAAACACCCTCATCC
TTTGGACCATCACATCGAACTGCGGGTTCAAACGTCGAGCAGCACAAGAG
CGGGAAAGTATCTGCCGCCAGAGGCGGTTCGGATGGCACTCATGGATCTA
TCGTCGGAAGTATCCCGCTTAACAGAATTAGCAAAGCGCAATCGGTAG
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protein sequence of Ggra5642.t1

>Ggra5642.t1 ID=Ggra5642.t1|Name=Ggra5642.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bp
MTNAPENFDSWILPEGVEKVTYTADTKIENCGVFRLEREDHTLANLLRMQ
LIRDPDVVFVGYKHPHPLDHHIELRVQTSSSTRAGKYLPPEAVRMALMDL
SSEVSRLTELAKRNR*
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mRNA from alignment at tig00000842_pilon:1227595..1228017+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5642.t1 ID=Ggra5642.t1|Name=Ggra5642.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000842_pilon:1227595..1228017+ (Gracilaria gracilis GNS1m male)
ATGACAAACGCGCCCGAAAATTTCGATTCATGGATTCTACCCGAAGGCGT
TGAAAAGTATGTTGACGTGTTCTGCTTGGTTTGATGAAGAAAACGGCTGC
GGAAAAGCTAACCACGTTTTGCAATCCACAGAGTTACCTACACAGCAGAT
ACTAAGATTGAGAACTGCGGTGTATTCCGCCTGGAACGAGAAGACCATAC
GCTGGCAAATCTACTACGAATGCAGCTTATACGAGATCCAGATGTAGTAT
TCGTCGGCTACAAACACCCTCATCCTTTGGACCATCACATCGAACTGCGG
GTTCAAACGTCGAGCAGCACAAGAGCGGGAAAGTATCTGCCGCCAGAGGC
GGTTCGGATGGCACTCATGGATCTATCGTCGGAAGTATCCCGCTTAACAG
AATTAGCAAAGCGCAATCGGTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:1227595..1228017+

>Ggra5642.t1 ID=Ggra5642.t1|Name=Ggra5642.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00000842_pilon:1227595..1228017+ (Gracilaria gracilis GNS1m male)
ATGACAAACGCGCCCGAAAATTTCGATTCATGGATTCTACCCGAAGGCGT
TGAAAAAGTTACCTACACAGCAGATACTAAGATTGAGAACTGCGGTGTAT
TCCGCCTGGAACGAGAAGACCATACGCTGGCAAATCTACTACGAATGCAG
CTTATACGAGATCCAGATGTAGTATTCGTCGGCTACAAACACCCTCATCC
TTTGGACCATCACATCGAACTGCGGGTTCAAACGTCGAGCAGCACAAGAG
CGGGAAAGTATCTGCCGCCAGAGGCGGTTCGGATGGCACTCATGGATCTA
TCGTCGGAAGTATCCCGCTTAACAGAATTAGCAAAGCGCAATCGGTAG
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