Ggra5662.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5662.t1
Unique NameGgra5662.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1285215..1286106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1185652.USDA257_c46840
Preferred namectc
PFAMsRibosomal_L25p,Ribosomal_TL5_C
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02897
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008097,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue5.4e-14
EggNOG OGsCOG1825@1|root,COG1825@2|Bacteria,1RDH0@1224|Proteobacteria,2U5P0@28211|Alphaproteobacteria,4B86C@82115|Rhizobiaceae
DescriptionThis is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5662Ggra5662Gracilaria gracilis GNS1m malegenetig00000842_pilon 1285215..1286106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5662.t1Ggra5662.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1285215..1286106 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5662.t1.stop1Ggra5662.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1285215..1285217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5662.t1.CDS1Ggra5662.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1285215..1285785 -
Ggra5662.t1.CDS2Ggra5662.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1285865..1286106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5662.t1.exon1Ggra5662.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1285215..1285785 -
Ggra5662.t1.exon2Ggra5662.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1285865..1286106 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5662.t1.intron1Ggra5662.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1285786..1285864 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5662.t1.start1Ggra5662.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1286104..1286106 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5662.t1 ID=Ggra5662.t1|Name=Ggra5662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=271bp
MIRNASGAIRSTQYNCLNKRLRFLANAVQSVPEDTAKENVVIDGINMLDS
SDPALFHRRITGRLREGNKRATAKIRKEGSWILAVIEGRNKFPNLIIQVP
KAPLLEDKQSGRFALQAKGKTRFVGPLYELTIEEHTVDEYGKLLSVSNIP
FERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPG
LREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDR
KGDGCRPVLGDDVPVVIISK*
back to top

spliced messenger RNA

>Ggra5662.t1 ID=Ggra5662.t1|Name=Ggra5662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000842_pilon:1285215..1286106- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGAAACGCTAGTGGAGCTATTCGATCCACACAGTACAACTGCTT
GAACAAGAGGCTTAGGTTCCTGGCAAACGCTGTACAAAGTGTACCAGAAG
ATACCGCCAAAGAAAATGTTGTAATTGATGGCATTAATATGCTTGATTCC
TCAGATCCTGCACTCTTTCATCGCCGTATAACTGGAAGACTTCGAGAAGG
AAATAAAAGAGCAACTGCAAAGATTCGAAAAGAAGGTTCTTGGATATTGG
CTGTCATCGAGGGGCGCAATAAGTTTCCCAACCTAATCATACAAGTTCCA
AAAGCCCCACTTCTTGAGGATAAGCAGTCGGGCAGATTTGCCTTACAAGC
AAAAGGAAAGACGCGCTTTGTGGGACCTTTGTATGAATTGACTATAGAAG
AACACACAGTGGATGAATACGGAAAGCTTCTGAGTGTCTCGAATATACCT
TTTGAACGGATACGTGTTCTTGCGCACAACATTCGGATACATCCAATCGG
AGATTACCCACTAGGTGTATCGTTTCGCTATTCTCCAGAGAACGAATCCG
TGAGAGTCCGAGTACCAATGTTATGCATCAATCATGAGAAGAGTCCTGGT
TTGCGAGAAGGGGGTTGGCTCAACCGACTTCAAAAGTACGTTGACATCAA
CGTTGCCCCGTTTACTCCGGCTCCCCACTTTGTGACAATTGATGTATCGG
GCATGGAGATGAAAGATAAACGGTATGTTAGAGATTTGCAGTTTGATAGA
AAAGGAGATGGATGCCGACCTGTTCTTGGTGATGATGTCCCTGTAGTAAT
CATTTCCAAATAG
back to top

protein sequence of Ggra5662.t1

>Ggra5662.t1 ID=Ggra5662.t1|Name=Ggra5662.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MIRNASGAIRSTQYNCLNKRLRFLANAVQSVPEDTAKENVVIDGINMLDS
SDPALFHRRITGRLREGNKRATAKIRKEGSWILAVIEGRNKFPNLIIQVP
KAPLLEDKQSGRFALQAKGKTRFVGPLYELTIEEHTVDEYGKLLSVSNIP
FERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPG
LREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDR
KGDGCRPVLGDDVPVVIISK*
back to top

mRNA from alignment at tig00000842_pilon:1285215..1286106-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5662.t1 ID=Ggra5662.t1|Name=Ggra5662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=892bp|location=Sequence derived from alignment at tig00000842_pilon:1285215..1286106- (Gracilaria gracilis GNS1m male)
ATGATTCGAAACGCTAGTGGAGCTATTCGATCCACACAGTACAACTGCTT
GAACAAGAGGCTTAGGTTCCTGGCAAACGCTGTACAAAGTGTACCAGAAG
ATACCGCCAAAGAAAATGTTGTAATTGATGGCATTAATATGCTTGATTCC
TCAGATCCTGCACTCTTTCATCGCCGTATAACTGGAAGACTTCGAGAAGG
AAATAAAAGAGCAACTGCAAAGATTCGAAAAGAAGGTTCTTGGTAAGTTG
CACTAATGGGTCAACACGTTTCTCGCATTGCTTGAGCCTGATGACTGACA
AAGACCTTGACTGGTGGATAGGATATTGGCTGTCATCGAGGGGCGCAATA
AGTTTCCCAACCTAATCATACAAGTTCCAAAAGCCCCACTTCTTGAGGAT
AAGCAGTCGGGCAGATTTGCCTTACAAGCAAAAGGAAAGACGCGCTTTGT
GGGACCTTTGTATGAATTGACTATAGAAGAACACACAGTGGATGAATACG
GAAAGCTTCTGAGTGTCTCGAATATACCTTTTGAACGGATACGTGTTCTT
GCGCACAACATTCGGATACATCCAATCGGAGATTACCCACTAGGTGTATC
GTTTCGCTATTCTCCAGAGAACGAATCCGTGAGAGTCCGAGTACCAATGT
TATGCATCAATCATGAGAAGAGTCCTGGTTTGCGAGAAGGGGGTTGGCTC
AACCGACTTCAAAAGTACGTTGACATCAACGTTGCCCCGTTTACTCCGGC
TCCCCACTTTGTGACAATTGATGTATCGGGCATGGAGATGAAAGATAAAC
GGTATGTTAGAGATTTGCAGTTTGATAGAAAAGGAGATGGATGCCGACCT
GTTCTTGGTGATGATGTCCCTGTAGTAATCATTTCCAAATAG
back to top

Coding sequence (CDS) from alignment at tig00000842_pilon:1285215..1286106-

>Ggra5662.t1 ID=Ggra5662.t1|Name=Ggra5662.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000842_pilon:1285215..1286106- (Gracilaria gracilis GNS1m male)
ATGATTCGAAACGCTAGTGGAGCTATTCGATCCACACAGTACAACTGCTT
GAACAAGAGGCTTAGGTTCCTGGCAAACGCTGTACAAAGTGTACCAGAAG
ATACCGCCAAAGAAAATGTTGTAATTGATGGCATTAATATGCTTGATTCC
TCAGATCCTGCACTCTTTCATCGCCGTATAACTGGAAGACTTCGAGAAGG
AAATAAAAGAGCAACTGCAAAGATTCGAAAAGAAGGTTCTTGGATATTGG
CTGTCATCGAGGGGCGCAATAAGTTTCCCAACCTAATCATACAAGTTCCA
AAAGCCCCACTTCTTGAGGATAAGCAGTCGGGCAGATTTGCCTTACAAGC
AAAAGGAAAGACGCGCTTTGTGGGACCTTTGTATGAATTGACTATAGAAG
AACACACAGTGGATGAATACGGAAAGCTTCTGAGTGTCTCGAATATACCT
TTTGAACGGATACGTGTTCTTGCGCACAACATTCGGATACATCCAATCGG
AGATTACCCACTAGGTGTATCGTTTCGCTATTCTCCAGAGAACGAATCCG
TGAGAGTCCGAGTACCAATGTTATGCATCAATCATGAGAAGAGTCCTGGT
TTGCGAGAAGGGGGTTGGCTCAACCGACTTCAAAAGTACGTTGACATCAA
CGTTGCCCCGTTTACTCCGGCTCCCCACTTTGTGACAATTGATGTATCGG
GCATGGAGATGAAAGATAAACGGTATGTTAGAGATTTGCAGTTTGATAGA
AAAGGAGATGGATGCCGACCTGTTCTTGGTGATGATGTCCCTGTAGTAAT
CATTTCCAAATAG
back to top