Ggra5662.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5662.t1
Unique NameGgra5662.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Homology
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A2V3IVE3 (50S ribosomal protein L25 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVE3_9FLOR)

HSP 1 Score: 359 bits (921), Expect = 1.970e-122
Identity = 175/270 (64.81%), Postives = 208/270 (77.04%), Query Frame = 0
Query:    1 MIRNASGAIRSTQYNCLNKRLRFLANAVQSVPEDTAKENVVIDGINMLDSSDPALFHRRITGRLREGNKRATAKIRKEGSWILAVIEGRNKFPNLIIQVPKAPLLEDKQSGRFALQAKGKTRFVGPLYELTIEEHTVDEYGKLLSVSNIPFERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPVLGDDVPVVIISK 270
            +IR     + S + +  + RL  ++NA     +     ++ I+ +N L+SSDP LFHRRI GRLRE NKRA   IRKEGSWI A +EGRN+ PNLIIQVP APLLED  SGRFA Q +GKTRFVGPLYEL IE+ T DEYG++L  S++PFERIRVLAHN+RIHP+ D PLGVSFRYSPENE VRVRVPM CIN EKSPGLREGGWLNRL++Y+DINVA FTPAP  VT+DVSGMEMK KR + DL+F+RK  GC+ VL +DV  V+ISK
Sbjct:    7 IIRGIGNVLESRRISKFDSRLMLISNAAHCHSDQIDTGDISIEDMNRLESSDPNLFHRRIIGRLREANKRARRAIRKEGSWIPAYVEGRNRIPNLIIQVPMAPLLEDLMSGRFAYQKRGKTRFVGPLYELVIEQSTTDEYGEVLRTSHLPFERIRVLAHNMRIHPLTDKPLGVSFRYSPENEPVRVRVPMHCINQEKSPGLREGGWLNRLERYIDINVAAFTPAPSLVTMDVSGMEMKQKRCIADLEFERKNQGCKLVLDEDVTAVVISK 276          
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A1M3DWJ0 (50S ribosomal protein L25 n=1 Tax=Alphaproteobacteria bacterium 43-37 TaxID=1895707 RepID=A0A1M3DWJ0_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-12
Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = 0
Query:  130 LTIEEHTVDEYGKLLSVSNIPFERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRP 257
            L  E H    + K+ ++ N+  +  +V+A ++++ P+ D+PL V F    +N  V V VP+  IN EKSPGL+ GG L  + + ++IN AP    P  V +D+SG+E+ D  ++  ++F+       P
Sbjct:   50 LNNELHHQGFFTKVFTM-NLEGKPEQVMAKDVQLDPVTDFPLHVDFIRVNQNTKVTVAVPLQFINEEKSPGLKRGGVLTIVVRDLEIN-APVNAIPEAVIVDLSGLEIHDSVHIDSIKFEAGVSAAHP 175          
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A429XIK1 (50S ribosomal protein L25 n=2 Tax=Rickettsiales TaxID=766 RepID=A0A429XIK1_9RICK)

HSP 1 Score: 73.6 bits (179), Expect = 4.800e-12
Identity = 41/152 (26.97%), Postives = 86/152 (56.58%), Query Frame = 0
Query:  119 GKTRFVGPLYELTIEE-HTVDEYGKLLSVSNIPFERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPVLGDDVPVVIIS 269
            G+   +  +Y+  ++E H  +   KL+S+  +  + ++V+  +++I P+ D P+ V F+   +N S++V V +  IN +KSPG+++GG LN ++KY+ +N  P      ++ ID+ G E+    ++ D++     +G  PV   +  ++ I+
Sbjct:   36 GENHMINLVYKDFLKEYHKGNLLSKLVSIK-LGKKSLKVIPRDVQIDPVSDNPIHVDFQLVKDNVSIKVDVRVKVINQDKSPGIKKGGILNVVKKYISLNCIPKNILG-YLEIDIEGFEIGKNIHINDIELP---NGVVPVDKSNFTILTIA 182          
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A3A0ENY7 (50S ribosomal protein L25 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0ENY7_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 5.050e-12
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = 0
Query:  155 RVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPVLGD 261
            RVL  +I++HP+ D+P+ V F    ++ ++ + VP++ +NHEKSPGL+ GG LN ++  V++   P    P  + IDV G+E+ D  ++  +       G +PV+ D
Sbjct:   74 RVLPRDIQLHPVTDWPIHVDFLRIGKHATIEIMVPVVFVNHEKSPGLKRGGVLNIVRHEVELR-CPADNIPGDIIIDVDGLEIGDSIHISAVTLPA---GVKPVIQD 176          
BLAST of Ggra5662.t1 vs. uniprot
Match: 50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Candidatus Bandiella numerosa TaxID=2570586 RepID=UPI001EFFE374 (50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Candidatus Bandiella numerosa TaxID=2570586 RepID=UPI001EFFE374)

HSP 1 Score: 72.8 bits (177), Expect = 8.830e-12
Identity = 40/150 (26.67%), Postives = 79/150 (52.67%), Query Frame = 0
Query:  120 KTRFVGPLYELTIEEHTVDEYGKLLSVSNIPFERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPVLGDDVPVVIIS 269
            +   +  +Y+  ++E+        L    +  + ++V++  ++  P+ D P+ + F+   EN  V+V V +  IN +KSPG++ GG LN ++KY+ +N  P    P ++ ID+SG E+    ++ DL      +G  PV  D+  ++ I+
Sbjct:   37 ENHMISLIYKDFLKEYQKGNLSSRLLEVKLGKKILKVISREVQTDPVTDNPIHIDFQLIKENIPVKVAVRVKVINKDKSPGIKIGGILNIVRKYISLNCIPQN-IPEYLEIDISGFEIGRNVHISDLVLP---EGVVPVDKDNFTILTIA 182          
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A1Z8KY47 (50S ribosomal protein L25 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Z8KY47_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 5.270e-11
Identity = 57/204 (27.94%), Postives = 91/204 (44.61%), Query Frame = 0
Query:   58 RRITGRLREGNKRATAKIRKEGSWILAVIEGRNKFPNLIIQVPKAPLLEDKQSGRFALQAKGKTRFVGPLYELTIEEHTVDEYGKLLSVSNIPFERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPVLGD 261
            R++ G  R+   + TA+  +    I AVI G  K P          +  D  + R  L   G   F+  L+++        E GK         ++ RVLA ++++ P+ D+P+ + F    +   + V VP+  IN E SPGL  GG LN ++  V++NV      P  +  DV  ME+ D   + D+      DG  P + D
Sbjct:    5 RKLEGEARDRVGKGTARAARRAGRIPAVIYGDKKDP--------VSITLDDHTIRMFLTKPG---FMTTLWDI--------EIGK---------DKHRVLARDVQLDPVMDFPVHIDFLRVTDRTKITVEVPVHFINEETSPGLTSGGTLNVVRYSVELNVRAGN-IPDSIEADVGSMELGDALKISDINLP---DGATPTIDD 176          
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A102DCV6 (50S ribosomal protein L25 n=1 Tax=Novosphingobium sp. Fuku2-ISO-50 TaxID=1739114 RepID=A0A102DCV6_9SPHN)

HSP 1 Score: 68.2 bits (165), Expect = 3.560e-10
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 0
Query:  154 IRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPV 258
            +R L  ++ +H + D PL V F       +V V+VP+L IN E SPG++ GG LN +   +++   P    P+ +T+DV+G+E+ D  ++ D++     DG R +
Sbjct:   73 VRTLPKDVALHKVSDRPLHVDFLRVSATHAVHVKVPLLFINEEASPGIKRGGVLNIVAHELELVSIP-EAIPNDITVDVTGLEIGDSIHMHDIKLP---DGVRAI 173          
BLAST of Ggra5662.t1 vs. uniprot
Match: F1Z990 (50S ribosomal protein L25 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 TaxID=983920 RepID=F1Z990_9SPHN)

HSP 1 Score: 65.1 bits (157), Expect = 4.710e-9
Identity = 53/178 (29.78%), Postives = 84/178 (47.19%), Query Frame = 0
Query:   69 KRATAKIRKEGSWILAVIEGRNKFPNLIIQVPKAPLLEDKQSGRFALQAKGKTRFVGPLYELTIEEHTVDEYGKLLSVSNIPFERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDL 246
            K A+  +R+EG    AVI G N       Q P A  +E+K   R    A G   F   + ELT+    V                 R L  ++  HP+ D P    F     + +V V+VP++ IN E SPGL++GG LN +   +++   P +  P  +T+DV+G+E+    +++D+
Sbjct:   17 KGASRVLRREGR-TPAVIYGDN-------QEPVAIHVEEKALAR----ALGTGHFFNSIVELTVGGTVV-----------------RTLPKDVAFHPVTDRPEHADFLRLAADHAVHVKVPVVFINEEASPGLKKGGVLNIVAHELELIATPDS-IPDDITVDVTGLEVGASIHLKDI 164          
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A1M3NUP2 (50S ribosomal protein L25 n=1 Tax=Rhizobiales bacterium 65-9 TaxID=1895816 RepID=A0A1M3NUP2_9HYPH)

HSP 1 Score: 63.5 bits (153), Expect = 1.930e-8
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 0
Query:  154 IRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPVLGD 261
            IR L  + ++  + D  + + F      ++VRV VP   +NH++SPG+++GG LN ++  V+  V P    P  +T+D+SG+E+ D   +  ++     +G RPV+ D
Sbjct:   73 IRALPRDYQLDRVKDTVVHIDFLRLNAGQTVRVFVPAHFVNHDQSPGIKQGGVLNVVRHEVEF-VVPADAIPESITVDLSGLEINDAARISGVKLP---EGVRPVIRD 176          
BLAST of Ggra5662.t1 vs. uniprot
Match: A0A2E5J5Z3 (50S ribosomal protein L25 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E5J5Z3_9RICK)

HSP 1 Score: 63.2 bits (152), Expect = 2.920e-8
Identity = 34/116 (29.31%), Postives = 66/116 (56.90%), Query Frame = 0
Query:  146 VSNIPFERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPGLREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDRKGDGCRPVLGD 261
            V NI  E+ +VL  ++++HP+ +  + + F    EN  V V VP++ IN    PGL++GG +N ++  V++  +P T  P  + I++ G+E+ D  ++  ++ D      +P++ D
Sbjct:   63 VLNINGEKHKVLPKDLQLHPVKETIVHLDFLRVGENTRVTVSVPVIFINENLCPGLKQGGVINIVRHEVEVR-SPVTKIPENLEINLDGIEIGDSIHISAVKLDTD---VKPIISD 174          
The following BLAST results are available for this feature:
BLAST of Ggra5662.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IVE31.970e-12264.8150S ribosomal protein L25 n=1 Tax=Gracilariopsis c... [more]
A0A1M3DWJ01.120e-1232.8150S ribosomal protein L25 n=1 Tax=Alphaproteobacte... [more]
A0A429XIK14.800e-1226.9750S ribosomal protein L25 n=2 Tax=Rickettsiales Ta... [more]
A0A3A0ENY75.050e-1234.5850S ribosomal protein L25 n=1 Tax=Proteobacteria b... [more]
50S ribosomal protein L25/general stress protein Ctc n=1 Tax=Candidatus Bandiella numerosa TaxID=2570586 RepID=UPI001EFFE3748.830e-1226.6750S ribosomal protein L25/general stress protein C... [more]
A0A1Z8KY475.270e-1127.9450S ribosomal protein L25 n=3 Tax=Alphaproteobacte... [more]
A0A102DCV63.560e-1033.3350S ribosomal protein L25 n=1 Tax=Novosphingobium ... [more]
F1Z9904.710e-929.7850S ribosomal protein L25 n=1 Tax=Novosphingobium ... [more]
A0A1M3NUP21.930e-831.4850S ribosomal protein L25 n=1 Tax=Rhizobiales bact... [more]
A0A2E5J5Z32.920e-829.3150S ribosomal protein L25 n=1 Tax=Rickettsiales ba... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020057Ribosomal protein L25, beta domainPFAMPF14693Ribosomal_TL5_Ccoord: 184..269
e-value: 8.9E-11
score: 42.0
IPR037121Ribosomal protein L25, C-terminalGENE3D2.170.120.20Ribosomal protein L25, beta domaincoord: 180..270
e-value: 4.0E-10
score: 41.8
NoneNo IPR availablePANTHERPTHR33284:SF1RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEINcoord: 60..266
NoneNo IPR availablePANTHERPTHR33284RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEINcoord: 60..266
IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamilySUPERFAMILY50715Ribosomal protein L25-likecoord: 149..269

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1285215..1286106 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5662.t1Ggra5662.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1285215..1286106 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5662.t1 ID=Ggra5662.t1|Name=Ggra5662.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MIRNASGAIRSTQYNCLNKRLRFLANAVQSVPEDTAKENVVIDGINMLDS
SDPALFHRRITGRLREGNKRATAKIRKEGSWILAVIEGRNKFPNLIIQVP
KAPLLEDKQSGRFALQAKGKTRFVGPLYELTIEEHTVDEYGKLLSVSNIP
FERIRVLAHNIRIHPIGDYPLGVSFRYSPENESVRVRVPMLCINHEKSPG
LREGGWLNRLQKYVDINVAPFTPAPHFVTIDVSGMEMKDKRYVRDLQFDR
KGDGCRPVLGDDVPVVIISK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020057Ribosomal_L25_b-dom
IPR037121Ribosomal_L25_C
IPR011035Ribosomal_L25/Gln-tRNA_synth