Ggra10227.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10227.t1
Unique Name	Ggra10227.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:158709..159656 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1216007.AOPM01000103_gene637
Preferred name	etfA
PFAMs	ETF,ETF_alpha
Max annot lvl	1236\|Gammaproteobacteria
KEGG ko	ko:K03522
Evalue	7.29e-93
EggNOG OGs	COG2025@1\|root,COG2025@2\|Bacteria,1MUFI@1224\|Proteobacteria,1RMK7@1236\|Gammaproteobacteria,2PZD5@267888\|Pseudoalteromonadaceae
Description	electron transfer flavoprotein, alpha subunit
COG category	C
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10227	Ggra10227	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 158709..159656 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10227.t1.start1	Ggra10227.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 158709..158711 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10227.t1.CDS1	Ggra10227.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 158709..159656 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10227.t1.exon1	Ggra10227.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 158709..159656 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10227.t1.stop1	Ggra10227.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 159654..159656 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10227.t1	Ggra10227.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 158709..159656 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:158709..159656+
coding sequence from alignment at tig00000016_pilon:158709..159656+

mRNA sequence

>Ggra10227.t1 ID=Ggra10227.t1|Name=Ggra10227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MSATALVVGDSASFAVRSAIQAAKACVGSGKIDLLLIGKGATAAAENASQ
WSALSTVYPVEEETPATAESATPVIQQQIVNNKYGYLIAAANSFGKNVLP
RVAGVLGVSAVSDIVKVIENDVFVRPIYAGNALATVKCTEDVKVLTIRPT
AFEPVEESNNGLPEIVKVENASQGIRSRWIGQETSENAGPDLTAADVVVA
GGRGLKSKENFKMLKDLAEQLGGAVGATRAAVDSGYVPNDLQVGQTGKVV
APQLYIGVGLSGAIQHLAGMKESKTIVAINKDADAPIFQVADYGLVADLF
EAVPDLCQKIKALPK*

spliced messenger RNA

>Ggra10227.t1 ID=Ggra10227.t1|Name=Ggra10227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000016_pilon:158709..159656+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGACAGCGCTTGTGGTCGGAGATAGTGCATCATTCGCCGTTCG
CAGCGCGATACAGGCAGCGAAGGCGTGCGTTGGGTCCGGTAAGATTGATC
TTCTGCTAATTGGAAAGGGTGCCACCGCTGCGGCTGAGAATGCGTCTCAG
TGGAGTGCATTAAGCACCGTTTATCCGGTTGAAGAAGAAACACCTGCGAC
GGCTGAATCGGCCACGCCTGTTATTCAGCAACAGATTGTTAACAACAAGT
ATGGATACTTGATCGCGGCTGCGAATTCCTTCGGAAAGAATGTCCTGCCT
CGAGTTGCTGGTGTTCTCGGCGTGTCTGCGGTTTCTGATATAGTTAAAGT
AATTGAGAACGATGTGTTTGTCAGACCGATCTACGCTGGGAATGCGCTAG
CAACAGTGAAGTGCACGGAGGACGTTAAGGTTCTTACTATTCGACCTACA
GCTTTCGAACCAGTCGAAGAGAGCAACAACGGATTACCAGAAATCGTAAA
AGTTGAAAATGCATCACAAGGTATTCGTTCGCGGTGGATCGGACAAGAGA
CAAGTGAAAATGCAGGACCCGATTTGACCGCTGCCGATGTGGTTGTTGCT
GGCGGAAGGGGTCTAAAGAGCAAAGAGAACTTCAAAATGCTAAAGGATTT
GGCTGAACAGCTTGGCGGAGCGGTCGGCGCAACGCGGGCGGCGGTTGATT
CTGGATATGTTCCAAACGATTTGCAGGTTGGGCAAACTGGGAAAGTTGTC
GCACCGCAGCTTTATATTGGTGTTGGGCTGAGTGGCGCGATCCAACACCT
CGCTGGGATGAAGGAGTCAAAGACGATTGTGGCTATTAACAAGGATGCTG
ATGCTCCTATATTCCAGGTGGCAGACTATGGACTTGTTGCAGATCTTTTT
GAGGCAGTTCCTGACCTGTGTCAGAAGATAAAGGCTCTTCCAAAATGA

protein sequence of Ggra10227.t1

>Ggra10227.t1 ID=Ggra10227.t1|Name=Ggra10227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MSATALVVGDSASFAVRSAIQAAKACVGSGKIDLLLIGKGATAAAENASQ
WSALSTVYPVEEETPATAESATPVIQQQIVNNKYGYLIAAANSFGKNVLP
RVAGVLGVSAVSDIVKVIENDVFVRPIYAGNALATVKCTEDVKVLTIRPT
AFEPVEESNNGLPEIVKVENASQGIRSRWIGQETSENAGPDLTAADVVVA
GGRGLKSKENFKMLKDLAEQLGGAVGATRAAVDSGYVPNDLQVGQTGKVV
APQLYIGVGLSGAIQHLAGMKESKTIVAINKDADAPIFQVADYGLVADLF
EAVPDLCQKIKALPK*

mRNA from alignment at tig00000016_pilon:158709..159656+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10227.t1 ID=Ggra10227.t1|Name=Ggra10227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000016_pilon:158709..159656+ (Gracilaria gracilis GNS1m male)
ATGAGCGCGACAGCGCTTGTGGTCGGAGATAGTGCATCATTCGCCGTTCG
CAGCGCGATACAGGCAGCGAAGGCGTGCGTTGGGTCCGGTAAGATTGATC
TTCTGCTAATTGGAAAGGGTGCCACCGCTGCGGCTGAGAATGCGTCTCAG
TGGAGTGCATTAAGCACCGTTTATCCGGTTGAAGAAGAAACACCTGCGAC
GGCTGAATCGGCCACGCCTGTTATTCAGCAACAGATTGTTAACAACAAGT
ATGGATACTTGATCGCGGCTGCGAATTCCTTCGGAAAGAATGTCCTGCCT
CGAGTTGCTGGTGTTCTCGGCGTGTCTGCGGTTTCTGATATAGTTAAAGT
AATTGAGAACGATGTGTTTGTCAGACCGATCTACGCTGGGAATGCGCTAG
CAACAGTGAAGTGCACGGAGGACGTTAAGGTTCTTACTATTCGACCTACA
GCTTTCGAACCAGTCGAAGAGAGCAACAACGGATTACCAGAAATCGTAAA
AGTTGAAAATGCATCACAAGGTATTCGTTCGCGGTGGATCGGACAAGAGA
CAAGTGAAAATGCAGGACCCGATTTGACCGCTGCCGATGTGGTTGTTGCT
GGCGGAAGGGGTCTAAAGAGCAAAGAGAACTTCAAAATGCTAAAGGATTT
GGCTGAACAGCTTGGCGGAGCGGTCGGCGCAACGCGGGCGGCGGTTGATT
CTGGATATGTTCCAAACGATTTGCAGGTTGGGCAAACTGGGAAAGTTGTC
GCACCGCAGCTTTATATTGGTGTTGGGCTGAGTGGCGCGATCCAACACCT
CGCTGGGATGAAGGAGTCAAAGACGATTGTGGCTATTAACAAGGATGCTG
ATGCTCCTATATTCCAGGTGGCAGACTATGGACTTGTTGCAGATCTTTTT
GAGGCAGTTCCTGACCTGTGTCAGAAGATAAAGGCTCTTCCAAAATGA

Coding sequence (CDS) from alignment at tig00000016_pilon:158709..159656+

>Ggra10227.t1 ID=Ggra10227.t1|Name=Ggra10227.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000016_pilon:158709..159656+ (Gracilaria gracilis GNS1m male)
ATGAGCGCGACAGCGCTTGTGGTCGGAGATAGTGCATCATTCGCCGTTCG
CAGCGCGATACAGGCAGCGAAGGCGTGCGTTGGGTCCGGTAAGATTGATC
TTCTGCTAATTGGAAAGGGTGCCACCGCTGCGGCTGAGAATGCGTCTCAG
TGGAGTGCATTAAGCACCGTTTATCCGGTTGAAGAAGAAACACCTGCGAC
GGCTGAATCGGCCACGCCTGTTATTCAGCAACAGATTGTTAACAACAAGT
ATGGATACTTGATCGCGGCTGCGAATTCCTTCGGAAAGAATGTCCTGCCT
CGAGTTGCTGGTGTTCTCGGCGTGTCTGCGGTTTCTGATATAGTTAAAGT
AATTGAGAACGATGTGTTTGTCAGACCGATCTACGCTGGGAATGCGCTAG
CAACAGTGAAGTGCACGGAGGACGTTAAGGTTCTTACTATTCGACCTACA
GCTTTCGAACCAGTCGAAGAGAGCAACAACGGATTACCAGAAATCGTAAA
AGTTGAAAATGCATCACAAGGTATTCGTTCGCGGTGGATCGGACAAGAGA
CAAGTGAAAATGCAGGACCCGATTTGACCGCTGCCGATGTGGTTGTTGCT
GGCGGAAGGGGTCTAAAGAGCAAAGAGAACTTCAAAATGCTAAAGGATTT
GGCTGAACAGCTTGGCGGAGCGGTCGGCGCAACGCGGGCGGCGGTTGATT
CTGGATATGTTCCAAACGATTTGCAGGTTGGGCAAACTGGGAAAGTTGTC
GCACCGCAGCTTTATATTGGTGTTGGGCTGAGTGGCGCGATCCAACACCT
CGCTGGGATGAAGGAGTCAAAGACGATTGTGGCTATTAACAAGGATGCTG
ATGCTCCTATATTCCAGGTGGCAGACTATGGACTTGTTGCAGATCTTTTT
GAGGCAGTTCCTGACCTGTGTCAGAAGATAAAGGCTCTTCCAAAATGA