Ggra10247.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10247.t1
Unique NameGgra10247.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:194574..195716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ253CT
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K09422
Evalue1.02e-43
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10247Ggra10247Gracilaria gracilis GNS1m malegenetig00000016_pilon 194574..195716 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10247.t1.stop1Ggra10247.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 194574..194576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10247.t1.CDS1Ggra10247.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 194574..195716 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10247.t1.exon1Ggra10247.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 194574..195716 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10247.t1.start1Ggra10247.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 195714..195716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10247.t1Ggra10247.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 194574..195716 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10247.t1 ID=Ggra10247.t1|Name=Ggra10247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MLQHKRSSPPPSARLGSPVTPSPAPSSPDDALHLLCLAASHNRPSHLHAS
RAHAVHNVPLSAPMVARYAAPPPHFADSHLPPQPLALYSHYAPSAPLLPL
PFAPPPPPPPASVMPAEFGAAAAAAAAAAALHHAHSAVTYAPSLLAQRQS
LLHVPLTPLPIAAQMVGAPLLSQPPPRRVKGPWRPEEDKILTELVNKLGA
RRWTLIASHIAGRTGKQARERWLNQLAPHLTKRAWTLEEDRIVMDAHARL
GNRWSEIAKLLKGRTDNATKNRFNTTIRRQISQLSTHARCPPAAAAERST
AAVAAAAASESAEAAAAAAAAATAAHQSRACGSVSEVASPVSQHDGVRGE
SRCKRKREADGSPSALQPVPQRAKSMAALS*
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spliced messenger RNA

>Ggra10247.t1 ID=Ggra10247.t1|Name=Ggra10247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000016_pilon:194574..195716- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCAGCATAAACGTTCGTCGCCGCCGCCATCCGCGCGCCTGGGCTC
GCCCGTCACCCCGTCGCCCGCGCCGTCGTCGCCCGACGACGCGCTGCACC
TCCTCTGTCTCGCCGCGTCGCACAACCGCCCATCGCACCTACACGCGTCG
CGCGCCCACGCCGTGCACAACGTCCCGCTCTCCGCCCCCATGGTGGCGCG
CTACGCCGCCCCGCCGCCGCACTTTGCCGACTCGCACCTCCCGCCGCAGC
CGCTCGCGCTCTACTCGCATTACGCCCCAAGCGCCCCGCTGCTGCCGCTG
CCCTTCGCGCCGCCGCCGCCACCGCCGCCGGCCTCCGTCATGCCCGCCGA
GTTTGGCGCCGCCGCAGCCGCAGCCGCCGCCGCCGCCGCGCTGCACCACG
CGCACTCGGCCGTCACGTACGCGCCCTCGCTGCTGGCGCAGCGCCAGTCG
TTGCTGCACGTGCCGCTCACGCCGCTGCCCATCGCCGCGCAGATGGTGGG
CGCGCCGCTGCTGTCGCAGCCGCCGCCGCGCCGCGTCAAGGGCCCGTGGC
GCCCGGAGGAGGACAAGATCCTCACCGAGCTCGTCAACAAGCTGGGCGCG
CGCCGATGGACGCTCATTGCGTCGCACATTGCAGGGCGCACCGGCAAGCA
GGCGCGCGAACGCTGGCTCAACCAATTGGCGCCGCACCTCACAAAGCGCG
CCTGGACCCTCGAGGAGGACCGTATCGTCATGGACGCGCACGCCAGACTG
GGCAATCGCTGGAGTGAAATCGCAAAGCTGCTCAAGGGACGCACGGATAA
TGCCACCAAGAACCGCTTCAATACCACCATTCGGAGACAGATTTCGCAAC
TGTCCACTCATGCACGCTGCCCGCCCGCCGCCGCTGCGGAGCGCTCGACG
GCCGCCGTCGCTGCCGCCGCCGCTTCGGAGAGCGCCGAGGCGGCGGCTGC
TGCCGCCGCCGCCGCAACGGCGGCCCATCAGTCGCGCGCGTGCGGCAGCG
TGAGCGAGGTGGCGTCACCTGTGTCACAACACGATGGTGTGCGTGGAGAG
TCGCGGTGCAAGAGGAAGAGGGAGGCCGATGGCTCGCCATCGGCGCTACA
ACCCGTGCCTCAGCGTGCCAAGTCGATGGCGGCCTTGTCGTGA
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protein sequence of Ggra10247.t1

>Ggra10247.t1 ID=Ggra10247.t1|Name=Ggra10247.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MLQHKRSSPPPSARLGSPVTPSPAPSSPDDALHLLCLAASHNRPSHLHAS
RAHAVHNVPLSAPMVARYAAPPPHFADSHLPPQPLALYSHYAPSAPLLPL
PFAPPPPPPPASVMPAEFGAAAAAAAAAAALHHAHSAVTYAPSLLAQRQS
LLHVPLTPLPIAAQMVGAPLLSQPPPRRVKGPWRPEEDKILTELVNKLGA
RRWTLIASHIAGRTGKQARERWLNQLAPHLTKRAWTLEEDRIVMDAHARL
GNRWSEIAKLLKGRTDNATKNRFNTTIRRQISQLSTHARCPPAAAAERST
AAVAAAAASESAEAAAAAAAAATAAHQSRACGSVSEVASPVSQHDGVRGE
SRCKRKREADGSPSALQPVPQRAKSMAALS*
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mRNA from alignment at tig00000016_pilon:194574..195716-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10247.t1 ID=Ggra10247.t1|Name=Ggra10247.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000016_pilon:194574..195716- (Gracilaria gracilis GNS1m male)
ATGTTGCAGCATAAACGTTCGTCGCCGCCGCCATCCGCGCGCCTGGGCTC
GCCCGTCACCCCGTCGCCCGCGCCGTCGTCGCCCGACGACGCGCTGCACC
TCCTCTGTCTCGCCGCGTCGCACAACCGCCCATCGCACCTACACGCGTCG
CGCGCCCACGCCGTGCACAACGTCCCGCTCTCCGCCCCCATGGTGGCGCG
CTACGCCGCCCCGCCGCCGCACTTTGCCGACTCGCACCTCCCGCCGCAGC
CGCTCGCGCTCTACTCGCATTACGCCCCAAGCGCCCCGCTGCTGCCGCTG
CCCTTCGCGCCGCCGCCGCCACCGCCGCCGGCCTCCGTCATGCCCGCCGA
GTTTGGCGCCGCCGCAGCCGCAGCCGCCGCCGCCGCCGCGCTGCACCACG
CGCACTCGGCCGTCACGTACGCGCCCTCGCTGCTGGCGCAGCGCCAGTCG
TTGCTGCACGTGCCGCTCACGCCGCTGCCCATCGCCGCGCAGATGGTGGG
CGCGCCGCTGCTGTCGCAGCCGCCGCCGCGCCGCGTCAAGGGCCCGTGGC
GCCCGGAGGAGGACAAGATCCTCACCGAGCTCGTCAACAAGCTGGGCGCG
CGCCGATGGACGCTCATTGCGTCGCACATTGCAGGGCGCACCGGCAAGCA
GGCGCGCGAACGCTGGCTCAACCAATTGGCGCCGCACCTCACAAAGCGCG
CCTGGACCCTCGAGGAGGACCGTATCGTCATGGACGCGCACGCCAGACTG
GGCAATCGCTGGAGTGAAATCGCAAAGCTGCTCAAGGGACGCACGGATAA
TGCCACCAAGAACCGCTTCAATACCACCATTCGGAGACAGATTTCGCAAC
TGTCCACTCATGCACGCTGCCCGCCCGCCGCCGCTGCGGAGCGCTCGACG
GCCGCCGTCGCTGCCGCCGCCGCTTCGGAGAGCGCCGAGGCGGCGGCTGC
TGCCGCCGCCGCCGCAACGGCGGCCCATCAGTCGCGCGCGTGCGGCAGCG
TGAGCGAGGTGGCGTCACCTGTGTCACAACACGATGGTGTGCGTGGAGAG
TCGCGGTGCAAGAGGAAGAGGGAGGCCGATGGCTCGCCATCGGCGCTACA
ACCCGTGCCTCAGCGTGCCAAGTCGATGGCGGCCTTGTCGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:194574..195716-

>Ggra10247.t1 ID=Ggra10247.t1|Name=Ggra10247.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000016_pilon:194574..195716- (Gracilaria gracilis GNS1m male)
ATGTTGCAGCATAAACGTTCGTCGCCGCCGCCATCCGCGCGCCTGGGCTC
GCCCGTCACCCCGTCGCCCGCGCCGTCGTCGCCCGACGACGCGCTGCACC
TCCTCTGTCTCGCCGCGTCGCACAACCGCCCATCGCACCTACACGCGTCG
CGCGCCCACGCCGTGCACAACGTCCCGCTCTCCGCCCCCATGGTGGCGCG
CTACGCCGCCCCGCCGCCGCACTTTGCCGACTCGCACCTCCCGCCGCAGC
CGCTCGCGCTCTACTCGCATTACGCCCCAAGCGCCCCGCTGCTGCCGCTG
CCCTTCGCGCCGCCGCCGCCACCGCCGCCGGCCTCCGTCATGCCCGCCGA
GTTTGGCGCCGCCGCAGCCGCAGCCGCCGCCGCCGCCGCGCTGCACCACG
CGCACTCGGCCGTCACGTACGCGCCCTCGCTGCTGGCGCAGCGCCAGTCG
TTGCTGCACGTGCCGCTCACGCCGCTGCCCATCGCCGCGCAGATGGTGGG
CGCGCCGCTGCTGTCGCAGCCGCCGCCGCGCCGCGTCAAGGGCCCGTGGC
GCCCGGAGGAGGACAAGATCCTCACCGAGCTCGTCAACAAGCTGGGCGCG
CGCCGATGGACGCTCATTGCGTCGCACATTGCAGGGCGCACCGGCAAGCA
GGCGCGCGAACGCTGGCTCAACCAATTGGCGCCGCACCTCACAAAGCGCG
CCTGGACCCTCGAGGAGGACCGTATCGTCATGGACGCGCACGCCAGACTG
GGCAATCGCTGGAGTGAAATCGCAAAGCTGCTCAAGGGACGCACGGATAA
TGCCACCAAGAACCGCTTCAATACCACCATTCGGAGACAGATTTCGCAAC
TGTCCACTCATGCACGCTGCCCGCCCGCCGCCGCTGCGGAGCGCTCGACG
GCCGCCGTCGCTGCCGCCGCCGCTTCGGAGAGCGCCGAGGCGGCGGCTGC
TGCCGCCGCCGCCGCAACGGCGGCCCATCAGTCGCGCGCGTGCGGCAGCG
TGAGCGAGGTGGCGTCACCTGTGTCACAACACGATGGTGTGCGTGGAGAG
TCGCGGTGCAAGAGGAAGAGGGAGGCCGATGGCTCGCCATCGGCGCTACA
ACCCGTGCCTCAGCGTGCCAAGTCGATGGCGGCCTTGTCGTGA
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