Ggra5507.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5507.t1
Unique NameGgra5507.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:623411..624493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704919.1
Preferred nameRFC3
PFAMsDNA_pol3_delta2,Rep_fac_C
Max annot lvl2759|Eukaryota
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
GOsGO:0000228,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003689,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019985,GO:0022402,GO:0022616,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033170,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042221,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045935,GO:0046483,GO:0046683,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Evalue6.27e-105
EggNOG OGsCOG0470@1|root,KOG2035@2759|Eukaryota
DescriptionDNA replication
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5507Ggra5507Gracilaria gracilis GNS1m malegenetig00000842_pilon 623411..624493 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5507.t1.stop1Ggra5507.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 623411..623413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5507.t1.CDS1Ggra5507.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 623411..624493 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5507.t1.exon1Ggra5507.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 623411..624493 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5507.t1.start1Ggra5507.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 624491..624493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5507.t1Ggra5507.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 623411..624493 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5507.t1 ID=Ggra5507.t1|Name=Ggra5507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MASEGLLWVDKYRPSTFTELSYNASLTKNLQSLSNADMPHLLFYGPSGAG
KRTRAHCVLRALFGQAVEKKKVVHRTLKLEKKQVEVTTVASVHHIEVNPS
ESGLKDRLVVQELIKDMASSAPLDVKKSLKVIVMHDVDQMTRLAQQALRR
TMERYSKTCRVIMVAESVTKIIEPLRSRCVGIRVARPSTSDIVSVLQSVA
QKEGITLPEHLAQRIAETSERNMRRALLQFEATRVSVGALSLPAEAQVML
GDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDVILRRLLEE
ILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYATFLR
QQATMMDEGC*
back to top

spliced messenger RNA

>Ggra5507.t1 ID=Ggra5507.t1|Name=Ggra5507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000842_pilon:623411..624493- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCGAAGGTTTACTTTGGGTCGACAAATACCGTCCATCTACCTT
CACTGAGCTCTCGTACAATGCATCTCTCACGAAGAATCTTCAGTCGCTGA
GCAACGCAGATATGCCTCATTTGCTTTTCTACGGCCCTTCCGGTGCTGGA
AAACGAACTCGAGCTCACTGTGTTTTACGCGCGTTGTTTGGACAGGCTGT
CGAAAAGAAGAAGGTTGTTCACCGGACGCTCAAACTGGAGAAGAAGCAAG
TCGAAGTCACCACCGTGGCTTCTGTGCATCACATCGAGGTCAATCCGTCT
GAATCTGGACTGAAGGACCGCCTCGTCGTGCAAGAACTCATTAAGGATAT
GGCTTCTTCGGCTCCTCTGGACGTCAAAAAGAGTCTGAAAGTTATTGTCA
TGCATGACGTTGATCAAATGACTCGACTCGCACAACAAGCATTGAGACGT
ACCATGGAAAGATACTCCAAAACATGTAGGGTTATCATGGTCGCCGAGTC
CGTCACGAAGATTATTGAGCCTCTTCGAAGTCGCTGCGTTGGCATTCGCG
TCGCACGTCCTTCGACATCGGATATCGTTTCGGTGCTTCAAAGCGTTGCT
CAAAAGGAAGGAATAACACTTCCGGAACATCTGGCTCAAAGAATCGCAGA
AACTTCCGAGCGAAACATGAGGAGAGCTCTTCTACAATTTGAAGCCACGC
GCGTATCTGTGGGGGCCTTGTCACTCCCTGCAGAAGCTCAGGTGATGTTA
GGTGATTGGGAATATGCATGTCAAGACTTGGCTGTGATGCTGACTCGTTC
ACAAACCGCATCCCAACTAATTGCTGTGCGAAAGCGTTTGCAAGAGCTAC
TGGCGCATGCGGTGCCGGGCGATGTGATCCTTCGTAGATTGTTGGAAGAG
ATTCTTAGGATCGCTGATGATGAGATCTGTCCTGAAATATGTAGAGTTGC
AGCTAAGTTTGATCGCAATTTAACGAAGGGAACGAAACCAATCTTCCATC
TGGAAGCCTTTTCCGCTCGCTTCATGCAAATCTATGCTACCTTTCTGAGG
CAGCAAGCGACAATGATGGACGAAGGATGTTGA
back to top

protein sequence of Ggra5507.t1

>Ggra5507.t1 ID=Ggra5507.t1|Name=Ggra5507.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MASEGLLWVDKYRPSTFTELSYNASLTKNLQSLSNADMPHLLFYGPSGAG
KRTRAHCVLRALFGQAVEKKKVVHRTLKLEKKQVEVTTVASVHHIEVNPS
ESGLKDRLVVQELIKDMASSAPLDVKKSLKVIVMHDVDQMTRLAQQALRR
TMERYSKTCRVIMVAESVTKIIEPLRSRCVGIRVARPSTSDIVSVLQSVA
QKEGITLPEHLAQRIAETSERNMRRALLQFEATRVSVGALSLPAEAQVML
GDWEYACQDLAVMLTRSQTASQLIAVRKRLQELLAHAVPGDVILRRLLEE
ILRIADDEICPEICRVAAKFDRNLTKGTKPIFHLEAFSARFMQIYATFLR
QQATMMDEGC*
back to top

mRNA from alignment at tig00000842_pilon:623411..624493-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5507.t1 ID=Ggra5507.t1|Name=Ggra5507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000842_pilon:623411..624493- (Gracilaria gracilis GNS1m male)
ATGGCGTCCGAAGGTTTACTTTGGGTCGACAAATACCGTCCATCTACCTT
CACTGAGCTCTCGTACAATGCATCTCTCACGAAGAATCTTCAGTCGCTGA
GCAACGCAGATATGCCTCATTTGCTTTTCTACGGCCCTTCCGGTGCTGGA
AAACGAACTCGAGCTCACTGTGTTTTACGCGCGTTGTTTGGACAGGCTGT
CGAAAAGAAGAAGGTTGTTCACCGGACGCTCAAACTGGAGAAGAAGCAAG
TCGAAGTCACCACCGTGGCTTCTGTGCATCACATCGAGGTCAATCCGTCT
GAATCTGGACTGAAGGACCGCCTCGTCGTGCAAGAACTCATTAAGGATAT
GGCTTCTTCGGCTCCTCTGGACGTCAAAAAGAGTCTGAAAGTTATTGTCA
TGCATGACGTTGATCAAATGACTCGACTCGCACAACAAGCATTGAGACGT
ACCATGGAAAGATACTCCAAAACATGTAGGGTTATCATGGTCGCCGAGTC
CGTCACGAAGATTATTGAGCCTCTTCGAAGTCGCTGCGTTGGCATTCGCG
TCGCACGTCCTTCGACATCGGATATCGTTTCGGTGCTTCAAAGCGTTGCT
CAAAAGGAAGGAATAACACTTCCGGAACATCTGGCTCAAAGAATCGCAGA
AACTTCCGAGCGAAACATGAGGAGAGCTCTTCTACAATTTGAAGCCACGC
GCGTATCTGTGGGGGCCTTGTCACTCCCTGCAGAAGCTCAGGTGATGTTA
GGTGATTGGGAATATGCATGTCAAGACTTGGCTGTGATGCTGACTCGTTC
ACAAACCGCATCCCAACTAATTGCTGTGCGAAAGCGTTTGCAAGAGCTAC
TGGCGCATGCGGTGCCGGGCGATGTGATCCTTCGTAGATTGTTGGAAGAG
ATTCTTAGGATCGCTGATGATGAGATCTGTCCTGAAATATGTAGAGTTGC
AGCTAAGTTTGATCGCAATTTAACGAAGGGAACGAAACCAATCTTCCATC
TGGAAGCCTTTTCCGCTCGCTTCATGCAAATCTATGCTACCTTTCTGAGG
CAGCAAGCGACAATGATGGACGAAGGATGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000842_pilon:623411..624493-

>Ggra5507.t1 ID=Ggra5507.t1|Name=Ggra5507.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000842_pilon:623411..624493- (Gracilaria gracilis GNS1m male)
ATGGCGTCCGAAGGTTTACTTTGGGTCGACAAATACCGTCCATCTACCTT
CACTGAGCTCTCGTACAATGCATCTCTCACGAAGAATCTTCAGTCGCTGA
GCAACGCAGATATGCCTCATTTGCTTTTCTACGGCCCTTCCGGTGCTGGA
AAACGAACTCGAGCTCACTGTGTTTTACGCGCGTTGTTTGGACAGGCTGT
CGAAAAGAAGAAGGTTGTTCACCGGACGCTCAAACTGGAGAAGAAGCAAG
TCGAAGTCACCACCGTGGCTTCTGTGCATCACATCGAGGTCAATCCGTCT
GAATCTGGACTGAAGGACCGCCTCGTCGTGCAAGAACTCATTAAGGATAT
GGCTTCTTCGGCTCCTCTGGACGTCAAAAAGAGTCTGAAAGTTATTGTCA
TGCATGACGTTGATCAAATGACTCGACTCGCACAACAAGCATTGAGACGT
ACCATGGAAAGATACTCCAAAACATGTAGGGTTATCATGGTCGCCGAGTC
CGTCACGAAGATTATTGAGCCTCTTCGAAGTCGCTGCGTTGGCATTCGCG
TCGCACGTCCTTCGACATCGGATATCGTTTCGGTGCTTCAAAGCGTTGCT
CAAAAGGAAGGAATAACACTTCCGGAACATCTGGCTCAAAGAATCGCAGA
AACTTCCGAGCGAAACATGAGGAGAGCTCTTCTACAATTTGAAGCCACGC
GCGTATCTGTGGGGGCCTTGTCACTCCCTGCAGAAGCTCAGGTGATGTTA
GGTGATTGGGAATATGCATGTCAAGACTTGGCTGTGATGCTGACTCGTTC
ACAAACCGCATCCCAACTAATTGCTGTGCGAAAGCGTTTGCAAGAGCTAC
TGGCGCATGCGGTGCCGGGCGATGTGATCCTTCGTAGATTGTTGGAAGAG
ATTCTTAGGATCGCTGATGATGAGATCTGTCCTGAAATATGTAGAGTTGC
AGCTAAGTTTGATCGCAATTTAACGAAGGGAACGAAACCAATCTTCCATC
TGGAAGCCTTTTCCGCTCGCTTCATGCAAATCTATGCTACCTTTCTGAGG
CAGCAAGCGACAATGATGGACGAAGGATGTTGA
back to top