Ggra10238.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10238.t1
Unique NameGgra10238.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:181647..182200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702349.1
Preferred nameUBTD2
PFAMsUBD,ubiquitin
Max annot lvl2759|Eukaryota
KEGG koko:K13123
KEGG ModuleM00355
Evalue6.98e-36
EggNOG OGsKOG0013@1|root,KOG0013@2759|Eukaryota
DescriptionUbiquitin-binding domain
COG categoryADK
BRITEko00000,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10238Ggra10238Gracilaria gracilis GNS1m malegenetig00000016_pilon 181647..182200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10238.t1Ggra10238.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 181647..182200 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10238.t1.start1Ggra10238.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 181647..181649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10238.t1.CDS1Ggra10238.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 181647..181859 +
Ggra10238.t1.CDS2Ggra10238.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 181961..182200 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10238.t1.exon1Ggra10238.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 181647..181859 +
Ggra10238.t1.exon2Ggra10238.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 181961..182200 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10238.t1.intron1Ggra10238.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 181860..181960 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10238.t1.stop1Ggra10238.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 182198..182200 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10238.t1 ID=Ggra10238.t1|Name=Ggra10238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=151bp
MGCASSKDAHRRGGAALAEWDGYIRAPKPWKVEPAISSQHLTRLRNEFWE
TRIEGRSEMWHALRFAAETESDELRNETVKAAGLRPANRRCTMQSMFDEL
GALYDIPMYALIDPSNLDEQPVHEQFKGAAKAVTDYVNAHDKSRRLARSL
*
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spliced messenger RNA

>Ggra10238.t1 ID=Ggra10238.t1|Name=Ggra10238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00000016_pilon:181647..182200+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGTGCTTCGTCAAAGGATGCGCACCGCCGTGGCGGCGCGGCACT
CGCAGAATGGGATGGCTACATCCGCGCTCCCAAGCCATGGAAAGTAGAGC
CGGCCATTTCGTCGCAGCATCTCACACGCCTGCGAAACGAATTCTGGGAG
ACCAGAATTGAAGGCCGCTCCGAGATGTGGCACGCTCTTCGTTTTGCTGC
CGAGACCGAATCCGATGAGCTGAGAAATGAGACTGTGAAGGCCGCCGGAT
TGAGACCGGCAAATCGACGCTGTACCATGCAGAGCATGTTTGATGAGCTG
GGCGCTTTGTATGACATTCCTATGTATGCTCTCATTGATCCTTCCAATTT
GGATGAACAGCCGGTGCATGAACAGTTCAAGGGTGCGGCCAAGGCTGTTA
CCGATTATGTCAATGCCCATGATAAGTCGAGACGGTTGGCTAGATCGTTG
TGA
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protein sequence of Ggra10238.t1

>Ggra10238.t1 ID=Ggra10238.t1|Name=Ggra10238.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=151bp
MGCASSKDAHRRGGAALAEWDGYIRAPKPWKVEPAISSQHLTRLRNEFWE
TRIEGRSEMWHALRFAAETESDELRNETVKAAGLRPANRRCTMQSMFDEL
GALYDIPMYALIDPSNLDEQPVHEQFKGAAKAVTDYVNAHDKSRRLARSL
*
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mRNA from alignment at tig00000016_pilon:181647..182200+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10238.t1 ID=Ggra10238.t1|Name=Ggra10238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp|location=Sequence derived from alignment at tig00000016_pilon:181647..182200+ (Gracilaria gracilis GNS1m male)
ATGGGCTGTGCTTCGTCAAAGGATGCGCACCGCCGTGGCGGCGCGGCACT
CGCAGAATGGGATGGCTACATCCGCGCTCCCAAGCCATGGAAAGTAGAGC
CGGCCATTTCGTCGCAGCATCTCACACGCCTGCGAAACGAATTCTGGGAG
ACCAGAATTGAAGGCCGCTCCGAGATGTGGCACGCTCTTCGTTTTGCTGC
CGAGACCGAATCCGTAAGTTTTCAAGTACGGGCGATTCGGGATGTAACTT
GAATTGGTTCTTACGTGTTTTCTCTTTTCGTGCTGCCGCTATTTCGTGCT
GCCGCTATGCGTAGGATGAGCTGAGAAATGAGACTGTGAAGGCCGCCGGA
TTGAGACCGGCAAATCGACGCTGTACCATGCAGAGCATGTTTGATGAGCT
GGGCGCTTTGTATGACATTCCTATGTATGCTCTCATTGATCCTTCCAATT
TGGATGAACAGCCGGTGCATGAACAGTTCAAGGGTGCGGCCAAGGCTGTT
ACCGATTATGTCAATGCCCATGATAAGTCGAGACGGTTGGCTAGATCGTT
GTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:181647..182200+

>Ggra10238.t1 ID=Ggra10238.t1|Name=Ggra10238.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=453bp|location=Sequence derived from alignment at tig00000016_pilon:181647..182200+ (Gracilaria gracilis GNS1m male)
ATGGGCTGTGCTTCGTCAAAGGATGCGCACCGCCGTGGCGGCGCGGCACT
CGCAGAATGGGATGGCTACATCCGCGCTCCCAAGCCATGGAAAGTAGAGC
CGGCCATTTCGTCGCAGCATCTCACACGCCTGCGAAACGAATTCTGGGAG
ACCAGAATTGAAGGCCGCTCCGAGATGTGGCACGCTCTTCGTTTTGCTGC
CGAGACCGAATCCGATGAGCTGAGAAATGAGACTGTGAAGGCCGCCGGAT
TGAGACCGGCAAATCGACGCTGTACCATGCAGAGCATGTTTGATGAGCTG
GGCGCTTTGTATGACATTCCTATGTATGCTCTCATTGATCCTTCCAATTT
GGATGAACAGCCGGTGCATGAACAGTTCAAGGGTGCGGCCAAGGCTGTTA
CCGATTATGTCAATGCCCATGATAAGTCGAGACGGTTGGCTAGATCGTTG
TGA
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