Ggra5515.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5515.t1
Unique NameGgra5515.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:746377..748143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003060155.1
PFAMsTrp_Tyr_perm
Max annot lvl3041|Chlorophyta
KEGG koko:K03834
KEGG TC2.A.42.1.1
Evalue6.7e-61
EggNOG OGsCOG0814@1|root,2QSPD@2759|Eukaryota,37J7C@33090|Viridiplantae,34HTH@3041|Chlorophyta
DescriptionAromatic amino acid permease
COG categoryE
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5515Ggra5515Gracilaria gracilis GNS1m malegenetig00000842_pilon 746377..748143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5515.t1Ggra5515.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 746377..748143 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5515.t1.stop1Ggra5515.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 746377..746379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5515.t1.CDS1Ggra5515.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 746377..747431 -
Ggra5515.t1.CDS2Ggra5515.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 747530..747656 -
Ggra5515.t1.CDS3Ggra5515.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 747781..748143 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5515.t1.exon1Ggra5515.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 746377..747431 -
Ggra5515.t1.exon2Ggra5515.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 747530..747656 -
Ggra5515.t1.exon3Ggra5515.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 747781..748143 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5515.t1.intron1Ggra5515.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 747432..747529 -
Ggra5515.t1.intron2Ggra5515.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 747657..747780 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5515.t1.start1Ggra5515.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 748141..748143 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5515.t1 ID=Ggra5515.t1|Name=Ggra5515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MRCAFVPPVPLRTRRAAPFIRTASLAPQLPPPPSALPSPRRRRGVWLCER
APRQTPPAPPPPPPPPPTPQQQQQPPRQQQQQQQQQQRAEDGPLFSNVAP
DAAGVLRRVAPSELACTCLIAGTMIGAGVLALPSVSAPVGFVPSSLALIA
VWTYMVATGLLISELTVTTACALGRPNGISILSLAAATLGPPGALVATVS
YTLLHYAILTAYTSQGAADALALVRHFTHAAHLPLPPVLTSPLVDAAAFS
TSIGAAMYLLSARSVQRVNNVLVAAVIAAFAAVLTASVSALDLSRLTAHS
DWHLLAHGPLLAVLFVSCVYHNVVSNVSMRLEGDRTKIRRAIVVGSAVPL
LMFLTYDAAMLASTNPTQQLNQLAVALFSTLAITTSFIGFVEGLTELSAD
LRHTLLRGADQQAAATTAADYVATIAPPTLMAALWPDVFLNALDAAGTYG
IAVLFGVLPPAMAWRNRRRRLTSQLRRSLAGGDALLAALVLPPVLLISQR
LYTLCSAWLAAHAA*
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spliced messenger RNA

>Ggra5515.t1 ID=Ggra5515.t1|Name=Ggra5515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000842_pilon:746377..748143- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGCGCGTTCGTGCCGCCCGTGCCGCTGCGCACGCGGCGTGCGGC
GCCCTTCATACGCACCGCGTCACTGGCGCCGCAGCTGCCGCCGCCGCCTT
CGGCACTGCCGTCGCCGCGACGTCGCCGCGGCGTGTGGCTCTGCGAGCGC
GCGCCGCGCCAGACGCCCCCAGCGCCGCCTCCGCCGCCTCCGCCGCCGCC
GACGCCGCAGCAGCAGCAGCAGCCGCCGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGCGCTGAGGACGGCCCGCTGTTCTCCAACGTGGCGCCC
GATGCGGCGGGCGTGCTCCGTCGCGTCGCGCCGTCTGAGCTGGCATGTAC
CTGTCTCATAGCTGGTACCATGATCGGAGCCGGCGTGTTGGCTTTGCCTT
CGGTGAGTGCGCCCGTGGGCTTCGTGCCGTCGTCGCTCGCTTTAATCGCC
GTTTGGACGTACATGGTCGCCACGGGGCTGCTCATCAGCGAGCTCACGGT
CACCACGGCGTGCGCACTCGGACGCCCCAACGGCATCTCCATCCTGTCGC
TGGCCGCAGCCACGCTGGGGCCGCCCGGCGCCCTCGTCGCCACCGTGTCA
TACACGCTGCTGCACTACGCCATCCTCACCGCTTACACCTCGCAGGGCGC
CGCCGACGCGCTGGCGCTCGTGCGCCACTTCACGCACGCCGCCCATCTGC
CGCTGCCGCCGGTGCTCACGTCGCCGCTCGTCGATGCCGCCGCCTTCTCC
ACCTCCATCGGCGCCGCCATGTACCTGCTGTCGGCGCGCAGCGTGCAGCG
CGTCAACAACGTCTTGGTGGCCGCCGTCATCGCCGCCTTCGCCGCCGTCT
TGACCGCCTCCGTGTCCGCGCTCGACCTGTCGCGCCTCACCGCCCACTCC
GACTGGCATCTGCTGGCGCACGGCCCGTTGCTCGCCGTGCTCTTTGTGTC
CTGTGTGTACCACAACGTCGTCAGCAACGTCTCCATGCGCCTGGAGGGCG
ATCGCACCAAGATCCGACGCGCCATCGTCGTCGGCAGCGCCGTCCCTCTG
CTCATGTTCCTCACGTACGACGCCGCCATGCTCGCCAGCACCAACCCCAC
GCAGCAGCTCAACCAGCTCGCCGTCGCGCTCTTCTCCACCCTGGCAATCA
CCACCAGCTTCATCGGCTTCGTGGAGGGGCTCACCGAGCTCAGCGCCGAC
CTGCGTCACACGCTGTTGCGCGGCGCTGACCAACAAGCCGCCGCCACCAC
TGCCGCCGACTATGTGGCCACCATTGCGCCGCCCACCCTCATGGCCGCGC
TGTGGCCCGACGTCTTTCTCAACGCGCTGGACGCCGCCGGTACCTACGGC
ATCGCCGTGCTGTTCGGCGTCTTGCCGCCCGCTATGGCGTGGCGCAACCG
CCGACGACGCCTTACCAGCCAGCTGCGTCGCTCGCTCGCCGGCGGCGATG
CGCTGCTCGCCGCGCTCGTGTTGCCGCCCGTGCTGCTCATTTCGCAGCGT
TTGTACACGCTTTGCAGCGCGTGGCTGGCCGCGCATGCCGCGTGA
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protein sequence of Ggra5515.t1

>Ggra5515.t1 ID=Ggra5515.t1|Name=Ggra5515.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MRCAFVPPVPLRTRRAAPFIRTASLAPQLPPPPSALPSPRRRRGVWLCER
APRQTPPAPPPPPPPPPTPQQQQQPPRQQQQQQQQQQRAEDGPLFSNVAP
DAAGVLRRVAPSELACTCLIAGTMIGAGVLALPSVSAPVGFVPSSLALIA
VWTYMVATGLLISELTVTTACALGRPNGISILSLAAATLGPPGALVATVS
YTLLHYAILTAYTSQGAADALALVRHFTHAAHLPLPPVLTSPLVDAAAFS
TSIGAAMYLLSARSVQRVNNVLVAAVIAAFAAVLTASVSALDLSRLTAHS
DWHLLAHGPLLAVLFVSCVYHNVVSNVSMRLEGDRTKIRRAIVVGSAVPL
LMFLTYDAAMLASTNPTQQLNQLAVALFSTLAITTSFIGFVEGLTELSAD
LRHTLLRGADQQAAATTAADYVATIAPPTLMAALWPDVFLNALDAAGTYG
IAVLFGVLPPAMAWRNRRRRLTSQLRRSLAGGDALLAALVLPPVLLISQR
LYTLCSAWLAAHAA*
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mRNA from alignment at tig00000842_pilon:746377..748143-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5515.t1 ID=Ggra5515.t1|Name=Ggra5515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00000842_pilon:746377..748143- (Gracilaria gracilis GNS1m male)
ATGCGCTGCGCGTTCGTGCCGCCCGTGCCGCTGCGCACGCGGCGTGCGGC
GCCCTTCATACGCACCGCGTCACTGGCGCCGCAGCTGCCGCCGCCGCCTT
CGGCACTGCCGTCGCCGCGACGTCGCCGCGGCGTGTGGCTCTGCGAGCGC
GCGCCGCGCCAGACGCCCCCAGCGCCGCCTCCGCCGCCTCCGCCGCCGCC
GACGCCGCAGCAGCAGCAGCAGCCGCCGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGCGCTGAGGACGGCCCGCTGTTCTCCAACGTGGCGCCC
GATGCGGCGGGCGTGCTCCGTCGCGTCGCGCCGTCTGAGCTGGCATGTAC
CTGTCTCATAGCTGTATGTTGTTGTGCTTGGCGCGCGCCTTGTCTCACGC
GTTTATTTTATGGTGCGTCTCCTCTATACAGTCTGCTCACACACAGCTGC
TTGCGTGCGTTGCTTGTTTACGTATAAACGTGCGCAGGGTACCATGATCG
GAGCCGGCGTGTTGGCTTTGCCTTCGGTGAGTGCGCCCGTGGGCTTCGTG
CCGTCGTCGCTCGCTTTAATCGCCGTTTGGACGTACATGGTCGCCACGGG
GCTGCTCATCAGCGGTGAGTAACTTGATATAATAATGCGCCGTATTTTTG
TGTGCGTATTTTCTAACTGTTAAAGCTCGCGCGCCACGTTCGCCGCTGCG
CGTCACACGCAGAGCTCACGGTCACCACGGCGTGCGCACTCGGACGCCCC
AACGGCATCTCCATCCTGTCGCTGGCCGCAGCCACGCTGGGGCCGCCCGG
CGCCCTCGTCGCCACCGTGTCATACACGCTGCTGCACTACGCCATCCTCA
CCGCTTACACCTCGCAGGGCGCCGCCGACGCGCTGGCGCTCGTGCGCCAC
TTCACGCACGCCGCCCATCTGCCGCTGCCGCCGGTGCTCACGTCGCCGCT
CGTCGATGCCGCCGCCTTCTCCACCTCCATCGGCGCCGCCATGTACCTGC
TGTCGGCGCGCAGCGTGCAGCGCGTCAACAACGTCTTGGTGGCCGCCGTC
ATCGCCGCCTTCGCCGCCGTCTTGACCGCCTCCGTGTCCGCGCTCGACCT
GTCGCGCCTCACCGCCCACTCCGACTGGCATCTGCTGGCGCACGGCCCGT
TGCTCGCCGTGCTCTTTGTGTCCTGTGTGTACCACAACGTCGTCAGCAAC
GTCTCCATGCGCCTGGAGGGCGATCGCACCAAGATCCGACGCGCCATCGT
CGTCGGCAGCGCCGTCCCTCTGCTCATGTTCCTCACGTACGACGCCGCCA
TGCTCGCCAGCACCAACCCCACGCAGCAGCTCAACCAGCTCGCCGTCGCG
CTCTTCTCCACCCTGGCAATCACCACCAGCTTCATCGGCTTCGTGGAGGG
GCTCACCGAGCTCAGCGCCGACCTGCGTCACACGCTGTTGCGCGGCGCTG
ACCAACAAGCCGCCGCCACCACTGCCGCCGACTATGTGGCCACCATTGCG
CCGCCCACCCTCATGGCCGCGCTGTGGCCCGACGTCTTTCTCAACGCGCT
GGACGCCGCCGGTACCTACGGCATCGCCGTGCTGTTCGGCGTCTTGCCGC
CCGCTATGGCGTGGCGCAACCGCCGACGACGCCTTACCAGCCAGCTGCGT
CGCTCGCTCGCCGGCGGCGATGCGCTGCTCGCCGCGCTCGTGTTGCCGCC
CGTGCTGCTCATTTCGCAGCGTTTGTACACGCTTTGCAGCGCGTGGCTGG
CCGCGCATGCCGCGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:746377..748143-

>Ggra5515.t1 ID=Ggra5515.t1|Name=Ggra5515.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000842_pilon:746377..748143- (Gracilaria gracilis GNS1m male)
ATGCGCTGCGCGTTCGTGCCGCCCGTGCCGCTGCGCACGCGGCGTGCGGC
GCCCTTCATACGCACCGCGTCACTGGCGCCGCAGCTGCCGCCGCCGCCTT
CGGCACTGCCGTCGCCGCGACGTCGCCGCGGCGTGTGGCTCTGCGAGCGC
GCGCCGCGCCAGACGCCCCCAGCGCCGCCTCCGCCGCCTCCGCCGCCGCC
GACGCCGCAGCAGCAGCAGCAGCCGCCGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCGCGCTGAGGACGGCCCGCTGTTCTCCAACGTGGCGCCC
GATGCGGCGGGCGTGCTCCGTCGCGTCGCGCCGTCTGAGCTGGCATGTAC
CTGTCTCATAGCTGGTACCATGATCGGAGCCGGCGTGTTGGCTTTGCCTT
CGGTGAGTGCGCCCGTGGGCTTCGTGCCGTCGTCGCTCGCTTTAATCGCC
GTTTGGACGTACATGGTCGCCACGGGGCTGCTCATCAGCGAGCTCACGGT
CACCACGGCGTGCGCACTCGGACGCCCCAACGGCATCTCCATCCTGTCGC
TGGCCGCAGCCACGCTGGGGCCGCCCGGCGCCCTCGTCGCCACCGTGTCA
TACACGCTGCTGCACTACGCCATCCTCACCGCTTACACCTCGCAGGGCGC
CGCCGACGCGCTGGCGCTCGTGCGCCACTTCACGCACGCCGCCCATCTGC
CGCTGCCGCCGGTGCTCACGTCGCCGCTCGTCGATGCCGCCGCCTTCTCC
ACCTCCATCGGCGCCGCCATGTACCTGCTGTCGGCGCGCAGCGTGCAGCG
CGTCAACAACGTCTTGGTGGCCGCCGTCATCGCCGCCTTCGCCGCCGTCT
TGACCGCCTCCGTGTCCGCGCTCGACCTGTCGCGCCTCACCGCCCACTCC
GACTGGCATCTGCTGGCGCACGGCCCGTTGCTCGCCGTGCTCTTTGTGTC
CTGTGTGTACCACAACGTCGTCAGCAACGTCTCCATGCGCCTGGAGGGCG
ATCGCACCAAGATCCGACGCGCCATCGTCGTCGGCAGCGCCGTCCCTCTG
CTCATGTTCCTCACGTACGACGCCGCCATGCTCGCCAGCACCAACCCCAC
GCAGCAGCTCAACCAGCTCGCCGTCGCGCTCTTCTCCACCCTGGCAATCA
CCACCAGCTTCATCGGCTTCGTGGAGGGGCTCACCGAGCTCAGCGCCGAC
CTGCGTCACACGCTGTTGCGCGGCGCTGACCAACAAGCCGCCGCCACCAC
TGCCGCCGACTATGTGGCCACCATTGCGCCGCCCACCCTCATGGCCGCGC
TGTGGCCCGACGTCTTTCTCAACGCGCTGGACGCCGCCGGTACCTACGGC
ATCGCCGTGCTGTTCGGCGTCTTGCCGCCCGCTATGGCGTGGCGCAACCG
CCGACGACGCCTTACCAGCCAGCTGCGTCGCTCGCTCGCCGGCGGCGATG
CGCTGCTCGCCGCGCTCGTGTTGCCGCCCGTGCTGCTCATTTCGCAGCGT
TTGTACACGCTTTGCAGCGCGTGGCTGGCCGCGCATGCCGCGTGA
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