Ggra5701.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5701.t1
Unique NameGgra5701.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1395657..1396748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5701Ggra5701Gracilaria gracilis GNS1m malegenetig00000842_pilon 1395657..1396748 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5701.t1.start1Ggra5701.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1395657..1395659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5701.t1.CDS1Ggra5701.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1395657..1396748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5701.t1.exon1Ggra5701.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1395657..1396748 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5701.t1.stop1Ggra5701.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1396746..1396748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5701.t1Ggra5701.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1395657..1396748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5701.t1 ID=Ggra5701.t1|Name=Ggra5701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=364bp
MAAASSQPAFPPIHLHCASAPDHSLSPDAEMERAKVVMASSTRMPAVAYF
GARYGHKWHVDIVALPHNAIRRQLFDAFIMSNALGKLQLDVADADLARVY
AWLGTLESFVRAVFNAEARFVFPLIDANVQKATTSDGKAVYLPELISVRG
RVNAQQRIFELLATARKTRDVATGETVAKINALRYALDQFGANVLDYFAA
IERFAPKLFKKALRNGQRQQHKVENKMFDFVHRHEQGSMLAALLMQCIES
RSTRQQFVERNVKKRQRAQLMVDVKRVENTHMRLAAAFDEAAANYEKRFN
VSKFLQHYDAQGDSKLTLAMLGENDINAESAQVIVHNKSPLDDDDSSRGV
ALDDDVLEVYTEQ*
back to top

spliced messenger RNA

>Ggra5701.t1 ID=Ggra5701.t1|Name=Ggra5701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000842_pilon:1395657..1396748+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTGCTTCGTCGCAACCGGCCTTCCCGCCAATCCATTTACACTG
CGCCTCCGCGCCGGACCACTCGCTGTCGCCCGATGCCGAGATGGAGCGCG
CCAAGGTGGTGATGGCCTCCTCCACCAGGATGCCGGCCGTGGCGTATTTC
GGCGCCCGCTACGGCCACAAGTGGCACGTTGACATAGTAGCGCTCCCGCA
CAACGCTATTCGACGGCAGCTATTCGACGCGTTCATAATGTCCAACGCGC
TTGGAAAGCTGCAACTGGACGTTGCCGACGCCGACCTTGCCAGGGTTTAC
GCGTGGTTGGGCACGCTGGAGTCGTTTGTGCGCGCTGTGTTTAATGCGGA
GGCGCGCTTTGTTTTCCCTTTAATCGATGCTAATGTGCAAAAGGCTACCA
CTTCGGACGGAAAGGCGGTGTACCTACCCGAGCTTATATCCGTTCGCGGT
CGAGTGAATGCGCAGCAGCGCATCTTTGAATTGTTGGCCACCGCTAGGAA
GACGAGGGACGTTGCCACTGGAGAGACTGTTGCGAAGATTAACGCGTTGC
GATACGCGCTAGACCAGTTTGGTGCCAATGTGTTGGACTACTTTGCGGCC
ATTGAACGATTTGCTCCCAAGCTGTTTAAGAAGGCTTTGCGAAATGGTCA
GCGTCAGCAACATAAGGTTGAGAACAAGATGTTTGACTTTGTGCATCGAC
ATGAACAGGGGTCCATGTTGGCCGCGTTGCTTATGCAATGCATTGAAAGT
CGTAGCACTAGACAACAGTTTGTGGAACGCAACGTGAAGAAGAGACAGCG
TGCACAGTTGATGGTGGATGTGAAACGCGTTGAGAACACGCACATGAGGC
TTGCGGCTGCGTTTGATGAAGCGGCGGCCAACTATGAAAAGCGTTTCAAC
GTGAGCAAGTTCTTACAGCATTATGATGCGCAGGGAGATAGCAAGCTGAC
GTTGGCTATGTTGGGAGAAAACGATATTAACGCCGAGAGTGCGCAGGTTA
TTGTGCACAACAAATCGCCTCTGGACGATGACGATTCTTCACGTGGCGTT
GCGCTGGATGATGACGTTCTGGAAGTGTATACAGAGCAATGA
back to top

protein sequence of Ggra5701.t1

>Ggra5701.t1 ID=Ggra5701.t1|Name=Ggra5701.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MAAASSQPAFPPIHLHCASAPDHSLSPDAEMERAKVVMASSTRMPAVAYF
GARYGHKWHVDIVALPHNAIRRQLFDAFIMSNALGKLQLDVADADLARVY
AWLGTLESFVRAVFNAEARFVFPLIDANVQKATTSDGKAVYLPELISVRG
RVNAQQRIFELLATARKTRDVATGETVAKINALRYALDQFGANVLDYFAA
IERFAPKLFKKALRNGQRQQHKVENKMFDFVHRHEQGSMLAALLMQCIES
RSTRQQFVERNVKKRQRAQLMVDVKRVENTHMRLAAAFDEAAANYEKRFN
VSKFLQHYDAQGDSKLTLAMLGENDINAESAQVIVHNKSPLDDDDSSRGV
ALDDDVLEVYTEQ*
back to top

mRNA from alignment at tig00000842_pilon:1395657..1396748+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5701.t1 ID=Ggra5701.t1|Name=Ggra5701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000842_pilon:1395657..1396748+ (Gracilaria gracilis GNS1m male)
ATGGCCGCTGCTTCGTCGCAACCGGCCTTCCCGCCAATCCATTTACACTG
CGCCTCCGCGCCGGACCACTCGCTGTCGCCCGATGCCGAGATGGAGCGCG
CCAAGGTGGTGATGGCCTCCTCCACCAGGATGCCGGCCGTGGCGTATTTC
GGCGCCCGCTACGGCCACAAGTGGCACGTTGACATAGTAGCGCTCCCGCA
CAACGCTATTCGACGGCAGCTATTCGACGCGTTCATAATGTCCAACGCGC
TTGGAAAGCTGCAACTGGACGTTGCCGACGCCGACCTTGCCAGGGTTTAC
GCGTGGTTGGGCACGCTGGAGTCGTTTGTGCGCGCTGTGTTTAATGCGGA
GGCGCGCTTTGTTTTCCCTTTAATCGATGCTAATGTGCAAAAGGCTACCA
CTTCGGACGGAAAGGCGGTGTACCTACCCGAGCTTATATCCGTTCGCGGT
CGAGTGAATGCGCAGCAGCGCATCTTTGAATTGTTGGCCACCGCTAGGAA
GACGAGGGACGTTGCCACTGGAGAGACTGTTGCGAAGATTAACGCGTTGC
GATACGCGCTAGACCAGTTTGGTGCCAATGTGTTGGACTACTTTGCGGCC
ATTGAACGATTTGCTCCCAAGCTGTTTAAGAAGGCTTTGCGAAATGGTCA
GCGTCAGCAACATAAGGTTGAGAACAAGATGTTTGACTTTGTGCATCGAC
ATGAACAGGGGTCCATGTTGGCCGCGTTGCTTATGCAATGCATTGAAAGT
CGTAGCACTAGACAACAGTTTGTGGAACGCAACGTGAAGAAGAGACAGCG
TGCACAGTTGATGGTGGATGTGAAACGCGTTGAGAACACGCACATGAGGC
TTGCGGCTGCGTTTGATGAAGCGGCGGCCAACTATGAAAAGCGTTTCAAC
GTGAGCAAGTTCTTACAGCATTATGATGCGCAGGGAGATAGCAAGCTGAC
GTTGGCTATGTTGGGAGAAAACGATATTAACGCCGAGAGTGCGCAGGTTA
TTGTGCACAACAAATCGCCTCTGGACGATGACGATTCTTCACGTGGCGTT
GCGCTGGATGATGACGTTCTGGAAGTGTATACAGAGCAATGA
back to top

Coding sequence (CDS) from alignment at tig00000842_pilon:1395657..1396748+

>Ggra5701.t1 ID=Ggra5701.t1|Name=Ggra5701.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000842_pilon:1395657..1396748+ (Gracilaria gracilis GNS1m male)
ATGGCCGCTGCTTCGTCGCAACCGGCCTTCCCGCCAATCCATTTACACTG
CGCCTCCGCGCCGGACCACTCGCTGTCGCCCGATGCCGAGATGGAGCGCG
CCAAGGTGGTGATGGCCTCCTCCACCAGGATGCCGGCCGTGGCGTATTTC
GGCGCCCGCTACGGCCACAAGTGGCACGTTGACATAGTAGCGCTCCCGCA
CAACGCTATTCGACGGCAGCTATTCGACGCGTTCATAATGTCCAACGCGC
TTGGAAAGCTGCAACTGGACGTTGCCGACGCCGACCTTGCCAGGGTTTAC
GCGTGGTTGGGCACGCTGGAGTCGTTTGTGCGCGCTGTGTTTAATGCGGA
GGCGCGCTTTGTTTTCCCTTTAATCGATGCTAATGTGCAAAAGGCTACCA
CTTCGGACGGAAAGGCGGTGTACCTACCCGAGCTTATATCCGTTCGCGGT
CGAGTGAATGCGCAGCAGCGCATCTTTGAATTGTTGGCCACCGCTAGGAA
GACGAGGGACGTTGCCACTGGAGAGACTGTTGCGAAGATTAACGCGTTGC
GATACGCGCTAGACCAGTTTGGTGCCAATGTGTTGGACTACTTTGCGGCC
ATTGAACGATTTGCTCCCAAGCTGTTTAAGAAGGCTTTGCGAAATGGTCA
GCGTCAGCAACATAAGGTTGAGAACAAGATGTTTGACTTTGTGCATCGAC
ATGAACAGGGGTCCATGTTGGCCGCGTTGCTTATGCAATGCATTGAAAGT
CGTAGCACTAGACAACAGTTTGTGGAACGCAACGTGAAGAAGAGACAGCG
TGCACAGTTGATGGTGGATGTGAAACGCGTTGAGAACACGCACATGAGGC
TTGCGGCTGCGTTTGATGAAGCGGCGGCCAACTATGAAAAGCGTTTCAAC
GTGAGCAAGTTCTTACAGCATTATGATGCGCAGGGAGATAGCAAGCTGAC
GTTGGCTATGTTGGGAGAAAACGATATTAACGCCGAGAGTGCGCAGGTTA
TTGTGCACAACAAATCGCCTCTGGACGATGACGATTCTTCACGTGGCGTT
GCGCTGGATGATGACGTTCTGGAAGTGTATACAGAGCAATGA
back to top