Ggra5493.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5493.t1
Unique Name	Ggra5493.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:455274..456332 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005846192.1
PFAMs	Mito_carr
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K05863
KEGG TC	2.A.29.1
KEGG Pathway	ko04020,ko04022,ko04217,ko04218,ko05012,ko05016,ko05166,map04020,map04022,map04217,map04218,map05012,map05016,map05166
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue	4.31e-165
EggNOG OGs	KOG0749@1\|root,KOG0749@2759\|Eukaryota,37N6E@33090\|Viridiplantae,34JWP@3041\|Chlorophyta
Description	Belongs to the mitochondrial carrier (TC 2.A.29) family
COG category	C
BiGG Reaction	iRC1080.CRv4_Au5_s9_g15209_t1
BRITE	ko00000,ko00001,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5493	Ggra5493	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 455274..456332 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5493.t1.start1	Ggra5493.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 455274..455276 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5493.t1.CDS1	Ggra5493.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 455274..456332 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5493.t1.exon1	Ggra5493.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 455274..456332 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5493.t1.stop1	Ggra5493.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 456330..456332 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5493.t1	Ggra5493.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 455274..456332 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:455274..456332+
coding sequence from alignment at tig00000842_pilon:455274..456332+

mRNA sequence

>Ggra5493.t1 ID=Ggra5493.t1|Name=Ggra5493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MVANVWQSVGLGGALASPAFTMIAERHKAVMTAADTPNSSAPKVLAAAPK
EKEFNAKKFLADLAAGGTAGGISKTIVAPIERVKLLLQTQDANPLIKSGE
IQRYTGIVNCFTRVAREQGIGSFWRGNLANVIRYFPTQAFNFAFKDTIKK
QFPKYDPKTQFGKFAMANIAAGGAAGACSLLIVYPLDFARTRLAADVGKG
SNREFTGLVDCLRKVAVRGGPMALYQGFGVSVQGIIVYRGAYFGLYDTAK
GLLFEDEKKANVFAKWAVAQAVTSVSGIISYPFDTVRRRLMMQSGGKEKM
YNGTIDAWRKILTNEGPRAFFKGSLSNILRGAGGALVLVMYDELKKIIDQ
RM*

spliced messenger RNA

>Ggra5493.t1 ID=Ggra5493.t1|Name=Ggra5493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000842_pilon:455274..456332+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCGAACGTATGGCAAAGCGTCGGTCTCGGCGGCGCCCTTGCGTC
GCCCGCCTTCACCATGATCGCCGAACGGCACAAGGCCGTCATGACCGCTG
CTGACACTCCCAACTCTTCCGCCCCGAAGGTGCTGGCCGCCGCTCCGAAG
GAGAAGGAGTTCAATGCCAAGAAGTTCCTTGCTGATCTTGCGGCTGGTGG
AACTGCCGGTGGTATCTCTAAGACCATTGTGGCTCCTATCGAACGAGTCA
AGCTTCTGCTTCAGACTCAGGACGCGAATCCCCTTATCAAGTCCGGCGAG
ATCCAGAGATACACTGGCATTGTCAATTGCTTCACTCGTGTCGCTCGTGA
ACAGGGGATCGGATCGTTCTGGAGGGGCAATCTTGCTAATGTCATTCGTT
ATTTCCCGACTCAGGCCTTTAACTTTGCTTTCAAGGATACTATCAAGAAG
CAGTTCCCGAAGTACGATCCGAAAACACAGTTTGGCAAGTTTGCTATGGC
CAATATTGCTGCCGGTGGCGCAGCTGGTGCATGCTCGCTTCTCATTGTCT
ATCCGCTAGATTTCGCAAGAACTCGTCTTGCGGCCGACGTCGGAAAGGGT
TCTAACAGAGAGTTTACTGGCCTTGTAGATTGTCTACGAAAGGTTGCCGT
CAGAGGAGGTCCGATGGCCCTCTACCAAGGATTTGGTGTCTCCGTCCAGG
GTATCATTGTATACCGTGGTGCCTACTTCGGTCTTTATGATACTGCCAAG
GGTCTTCTCTTTGAGGATGAGAAGAAGGCTAATGTTTTCGCCAAGTGGGC
CGTCGCCCAGGCTGTGACCTCTGTATCCGGTATCATCTCGTATCCATTCG
ACACAGTCCGTCGTCGTCTTATGATGCAGTCCGGTGGCAAGGAAAAGATG
TACAACGGTACTATCGATGCTTGGAGAAAGATCCTTACCAACGAGGGACC
AAGAGCTTTCTTCAAGGGTTCTCTGTCCAACATCCTTCGCGGTGCCGGTG
GTGCTCTCGTTCTCGTCATGTATGATGAACTGAAGAAGATTATCGACCAG
CGAATGTAA

protein sequence of Ggra5493.t1

>Ggra5493.t1 ID=Ggra5493.t1|Name=Ggra5493.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MVANVWQSVGLGGALASPAFTMIAERHKAVMTAADTPNSSAPKVLAAAPK
EKEFNAKKFLADLAAGGTAGGISKTIVAPIERVKLLLQTQDANPLIKSGE
IQRYTGIVNCFTRVAREQGIGSFWRGNLANVIRYFPTQAFNFAFKDTIKK
QFPKYDPKTQFGKFAMANIAAGGAAGACSLLIVYPLDFARTRLAADVGKG
SNREFTGLVDCLRKVAVRGGPMALYQGFGVSVQGIIVYRGAYFGLYDTAK
GLLFEDEKKANVFAKWAVAQAVTSVSGIISYPFDTVRRRLMMQSGGKEKM
YNGTIDAWRKILTNEGPRAFFKGSLSNILRGAGGALVLVMYDELKKIIDQ
RM*

mRNA from alignment at tig00000842_pilon:455274..456332+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5493.t1 ID=Ggra5493.t1|Name=Ggra5493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000842_pilon:455274..456332+ (Gracilaria gracilis GNS1m male)
ATGGTCGCGAACGTATGGCAAAGCGTCGGTCTCGGCGGCGCCCTTGCGTC
GCCCGCCTTCACCATGATCGCCGAACGGCACAAGGCCGTCATGACCGCTG
CTGACACTCCCAACTCTTCCGCCCCGAAGGTGCTGGCCGCCGCTCCGAAG
GAGAAGGAGTTCAATGCCAAGAAGTTCCTTGCTGATCTTGCGGCTGGTGG
AACTGCCGGTGGTATCTCTAAGACCATTGTGGCTCCTATCGAACGAGTCA
AGCTTCTGCTTCAGACTCAGGACGCGAATCCCCTTATCAAGTCCGGCGAG
ATCCAGAGATACACTGGCATTGTCAATTGCTTCACTCGTGTCGCTCGTGA
ACAGGGGATCGGATCGTTCTGGAGGGGCAATCTTGCTAATGTCATTCGTT
ATTTCCCGACTCAGGCCTTTAACTTTGCTTTCAAGGATACTATCAAGAAG
CAGTTCCCGAAGTACGATCCGAAAACACAGTTTGGCAAGTTTGCTATGGC
CAATATTGCTGCCGGTGGCGCAGCTGGTGCATGCTCGCTTCTCATTGTCT
ATCCGCTAGATTTCGCAAGAACTCGTCTTGCGGCCGACGTCGGAAAGGGT
TCTAACAGAGAGTTTACTGGCCTTGTAGATTGTCTACGAAAGGTTGCCGT
CAGAGGAGGTCCGATGGCCCTCTACCAAGGATTTGGTGTCTCCGTCCAGG
GTATCATTGTATACCGTGGTGCCTACTTCGGTCTTTATGATACTGCCAAG
GGTCTTCTCTTTGAGGATGAGAAGAAGGCTAATGTTTTCGCCAAGTGGGC
CGTCGCCCAGGCTGTGACCTCTGTATCCGGTATCATCTCGTATCCATTCG
ACACAGTCCGTCGTCGTCTTATGATGCAGTCCGGTGGCAAGGAAAAGATG
TACAACGGTACTATCGATGCTTGGAGAAAGATCCTTACCAACGAGGGACC
AAGAGCTTTCTTCAAGGGTTCTCTGTCCAACATCCTTCGCGGTGCCGGTG
GTGCTCTCGTTCTCGTCATGTATGATGAACTGAAGAAGATTATCGACCAG
CGAATGTAA

Coding sequence (CDS) from alignment at tig00000842_pilon:455274..456332+

>Ggra5493.t1 ID=Ggra5493.t1|Name=Ggra5493.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000842_pilon:455274..456332+ (Gracilaria gracilis GNS1m male)
ATGGTCGCGAACGTATGGCAAAGCGTCGGTCTCGGCGGCGCCCTTGCGTC
GCCCGCCTTCACCATGATCGCCGAACGGCACAAGGCCGTCATGACCGCTG
CTGACACTCCCAACTCTTCCGCCCCGAAGGTGCTGGCCGCCGCTCCGAAG
GAGAAGGAGTTCAATGCCAAGAAGTTCCTTGCTGATCTTGCGGCTGGTGG
AACTGCCGGTGGTATCTCTAAGACCATTGTGGCTCCTATCGAACGAGTCA
AGCTTCTGCTTCAGACTCAGGACGCGAATCCCCTTATCAAGTCCGGCGAG
ATCCAGAGATACACTGGCATTGTCAATTGCTTCACTCGTGTCGCTCGTGA
ACAGGGGATCGGATCGTTCTGGAGGGGCAATCTTGCTAATGTCATTCGTT
ATTTCCCGACTCAGGCCTTTAACTTTGCTTTCAAGGATACTATCAAGAAG
CAGTTCCCGAAGTACGATCCGAAAACACAGTTTGGCAAGTTTGCTATGGC
CAATATTGCTGCCGGTGGCGCAGCTGGTGCATGCTCGCTTCTCATTGTCT
ATCCGCTAGATTTCGCAAGAACTCGTCTTGCGGCCGACGTCGGAAAGGGT
TCTAACAGAGAGTTTACTGGCCTTGTAGATTGTCTACGAAAGGTTGCCGT
CAGAGGAGGTCCGATGGCCCTCTACCAAGGATTTGGTGTCTCCGTCCAGG
GTATCATTGTATACCGTGGTGCCTACTTCGGTCTTTATGATACTGCCAAG
GGTCTTCTCTTTGAGGATGAGAAGAAGGCTAATGTTTTCGCCAAGTGGGC
CGTCGCCCAGGCTGTGACCTCTGTATCCGGTATCATCTCGTATCCATTCG
ACACAGTCCGTCGTCGTCTTATGATGCAGTCCGGTGGCAAGGAAAAGATG
TACAACGGTACTATCGATGCTTGGAGAAAGATCCTTACCAACGAGGGACC
AAGAGCTTTCTTCAAGGGTTCTCTGTCCAACATCCTTCGCGGTGCCGGTG
GTGCTCTCGTTCTCGTCATGTATGATGAACTGAAGAAGATTATCGACCAG
CGAATGTAA