Ggra5714.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5714.t1
Unique Name	Ggra5714.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	679

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:1424712..1427314 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5714	Ggra5714	Gracilaria gracilis GNS1m male	gene	tig00000842_pilon 1424712..1427314 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5714.t1	Ggra5714.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000842_pilon 1424712..1427314 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5714.t1.start1	Ggra5714.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000842_pilon 1424712..1424714 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5714.t1.CDS1	Ggra5714.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 1424712..1426218 +
Ggra5714.t1.CDS2	Ggra5714.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000842_pilon 1426785..1427314 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5714.t1.exon1	Ggra5714.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 1424712..1426218 +
Ggra5714.t1.exon2	Ggra5714.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000842_pilon 1426785..1427314 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5714.t1.intron1	Ggra5714.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000842_pilon 1426219..1426784 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5714.t1.stop1	Ggra5714.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000842_pilon 1427312..1427314 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000842_pilon:1424712..1427314+
coding sequence from alignment at tig00000842_pilon:1424712..1427314+

mRNA sequence

>Ggra5714.t1 ID=Ggra5714.t1|Name=Ggra5714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=679bp
MIPQPIPQSPKPPSESQQTIHLDPNAAEFVPASVEQPHHHLLQSSSLNPN
APEFVPGRPAPTTPQICLNPAAEEFVPFHHHALLYAQQCVSNPSIHPHLQ
LLPPTFETKASNLSSISLNPEADEFVPASLTKPDVHFEWSEPQNSTCAWD
LPPPSDTSSEEALERSKVWWSTEHDARNELHSSSPQPHERDAAIEDKESG
QWPSQQYLDEWAVEREGSAGEMEPALDNRWRIHQDVEKKDQITPLMNCSK
AQHLHGAQESIGDENSQVKTKKKKRKKKKKKAEKPTERPLTRKEYSSNDE
YDKFPGSWNERNCFRERHDSKWNHHTHAAQKESTADAASSMQNENLDAST
MGGKLMDKRLEKGNPYAINSNHINQSSSAVEVQNSNNSYMYDGLQQENSW
NIEENSLINRDSKWDENEPEEQKNHDIWHEYELEAQQNHDMVENNKKDSS
QTEQGDDDKSVRTLNDREGKNRGTRKKLKARRGTIKGDEVHQHGSNQGGR
DLRQVDDGSERESTECDAWEAIENQDAWNGESPYDESDFRGFGIAKDPEK
SSKEQRETMKTIQEMKSTEDSDLKAWKSSGEENAPRMSGFDISCDRTLMG
KGWGRLGSEEKGIPSDSWLNAGESPLSFANEATKDMWALPATEANEEETD
SADLTPQQIREKTDFIGREQVVYDLSDV*

spliced messenger RNA

>Ggra5714.t1 ID=Ggra5714.t1|Name=Ggra5714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000842_pilon:1424712..1427314+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACCGCAACCCATTCCACAATCTCCAAAACCTCCCTCCGAATCGCA
ACAAACCATCCATCTCGACCCAAACGCTGCAGAATTTGTACCGGCGAGCG
TAGAGCAACCTCACCATCATTTGCTCCAGTCGTCTAGTTTAAATCCCAAT
GCACCAGAGTTTGTCCCTGGTCGGCCTGCACCAACAACCCCACAAATTTG
TTTAAACCCTGCTGCCGAAGAGTTCGTGCCATTCCACCACCACGCTCTTC
TCTACGCGCAACAATGCGTCTCCAATCCTTCTATTCACCCCCATCTTCAG
CTGCTGCCCCCGACTTTTGAAACAAAAGCTTCGAATCTTTCCTCCATATC
GCTGAACCCTGAAGCTGATGAATTTGTACCTGCTTCGCTCACAAAGCCTG
ACGTGCATTTCGAATGGTCTGAGCCTCAGAACTCCACATGTGCTTGGGAC
CTACCGCCCCCTTCGGACACAAGCTCTGAAGAAGCGCTTGAACGCAGCAA
AGTATGGTGGTCAACTGAACACGACGCCAGAAACGAATTACATTCGTCCT
CACCACAGCCACATGAACGCGACGCAGCAATTGAAGATAAGGAGAGTGGC
CAGTGGCCATCCCAACAATACCTGGACGAATGGGCTGTAGAGCGCGAAGG
AAGTGCTGGGGAAATGGAGCCCGCGTTAGATAACCGTTGGCGTATTCATC
AAGATGTAGAAAAAAAGGACCAAATAACACCGCTAATGAATTGTAGTAAA
GCCCAACACCTTCATGGTGCACAGGAAAGTATCGGTGATGAAAACAGCCA
GGTCAAAACgaagaagaagaaaagaaagaagaagaagaagaaagcagaga
aACCGACTGAGAGGCCCCTTACGAGGAAAGAATACAGCAGCAACGATGAA
TATGATAAGTTCCCTGGTTCTTGGAATGAAAGGAATTGCTTTAGGGAAAG
ACATGATTCAAAGTGGAATCATCATACGCATGCTGCACAGAAAGAAAGCA
CAGCCGATGCGGCAAGCTCCATGCAGAACGAAAATCTGGATGCCTCGACT
ATGGGAGGTAAACTGATGGACAAGCGTTTAGAGAAAGGCAATCCTTACGC
TATTAACTCAAACCACATTAATCAAAGTTCAAGCGCAGTAGAGGTGCAAA
ACAGCAACAATAGCTACATGTATGATGGCCTACAACAGGAGAATAGCTGG
AATATAGAAGAAAACAGCTTGATCAATAGGGACTCTAAATGGGATGAAAA
CGAACCCGAAGAGCAAAAGAATCATGATATCTGGCATGAATATGAGCTCG
AAGCGCAACAGAATCATGATATGGTGGAAAACAATAAGAAAGATAGCAGT
CAAACCGAACAGGGAGACGATGACAAAAGCGTTCGAACCTTGAACGATAG
GGAAGGAAAGAATCGAGGGACACGAAAAAAATTAAAGGCTCGGAGGGGAA
CTATCAAAGGTGATGAAGTACATCAACACGGCTCCAATCAGGGAGGTCGG
GACCTAAGACAGGTCGACGATGGAAGTGAAAGGGAAAGCACAGAATGCGA
TGCTTGGGAGGCTATTGAAAACCAAGACGCCTGGAACGGAGAATCCCCGT
ATGATGAAAGTGATTTCCGTGGCTTTGGTATTGCAAAGGACCCTGAAAAA
AGTTCTAAAGAGCAGAGAGAGACGATGAAAACTATCCAGGAAATGAAGTC
AACAGAGGATTCTGATTTAAAGGCCTGGAAAAGCAGTGGAGAAGAAAATG
CTCCGCGTATGTCTGGATTTGATATTTCCTGCGACAGAACTCTGATGGGG
AAAGGATGGGGACGGCTTGGATCAGAAGAGAAGGGAATTCCGTCAGATTC
TTGGTTAAATGCAGGCGAGAGCCCGCTATCTTTCGCGAATGAAGCGACGA
AGGATATGTGGGCACTTCCAGCGACAGAAGCTAATGAAGAAGAGACGGAC
AGTGCAGACCTGACACCGCAGCAGATTCGGGAGAAGACCGATTTTATCGG
CCGTGAACAGGTTGTTTATGACTTGAGCGATGTGTAG

protein sequence of Ggra5714.t1

>Ggra5714.t1 ID=Ggra5714.t1|Name=Ggra5714.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=679bp
MIPQPIPQSPKPPSESQQTIHLDPNAAEFVPASVEQPHHHLLQSSSLNPN
APEFVPGRPAPTTPQICLNPAAEEFVPFHHHALLYAQQCVSNPSIHPHLQ
LLPPTFETKASNLSSISLNPEADEFVPASLTKPDVHFEWSEPQNSTCAWD
LPPPSDTSSEEALERSKVWWSTEHDARNELHSSSPQPHERDAAIEDKESG
QWPSQQYLDEWAVEREGSAGEMEPALDNRWRIHQDVEKKDQITPLMNCSK
AQHLHGAQESIGDENSQVKTKKKKRKKKKKKAEKPTERPLTRKEYSSNDE
YDKFPGSWNERNCFRERHDSKWNHHTHAAQKESTADAASSMQNENLDAST
MGGKLMDKRLEKGNPYAINSNHINQSSSAVEVQNSNNSYMYDGLQQENSW
NIEENSLINRDSKWDENEPEEQKNHDIWHEYELEAQQNHDMVENNKKDSS
QTEQGDDDKSVRTLNDREGKNRGTRKKLKARRGTIKGDEVHQHGSNQGGR
DLRQVDDGSERESTECDAWEAIENQDAWNGESPYDESDFRGFGIAKDPEK
SSKEQRETMKTIQEMKSTEDSDLKAWKSSGEENAPRMSGFDISCDRTLMG
KGWGRLGSEEKGIPSDSWLNAGESPLSFANEATKDMWALPATEANEEETD
SADLTPQQIREKTDFIGREQVVYDLSDV*

mRNA from alignment at tig00000842_pilon:1424712..1427314+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5714.t1 ID=Ggra5714.t1|Name=Ggra5714.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2603bp|location=Sequence derived from alignment at tig00000842_pilon:1424712..1427314+ (Gracilaria gracilis GNS1m male)
ATGATACCGCAACCCATTCCACAATCTCCAAAACCTCCCTCCGAATCGCA
ACAAACCATCCATCTCGACCCAAACGCTGCAGAATTTGTACCGGCGAGCG
TAGAGCAACCTCACCATCATTTGCTCCAGTCGTCTAGTTTAAATCCCAAT
GCACCAGAGTTTGTCCCTGGTCGGCCTGCACCAACAACCCCACAAATTTG
TTTAAACCCTGCTGCCGAAGAGTTCGTGCCATTCCACCACCACGCTCTTC
TCTACGCGCAACAATGCGTCTCCAATCCTTCTATTCACCCCCATCTTCAG
CTGCTGCCCCCGACTTTTGAAACAAAAGCTTCGAATCTTTCCTCCATATC
GCTGAACCCTGAAGCTGATGAATTTGTACCTGCTTCGCTCACAAAGCCTG
ACGTGCATTTCGAATGGTCTGAGCCTCAGAACTCCACATGTGCTTGGGAC
CTACCGCCCCCTTCGGACACAAGCTCTGAAGAAGCGCTTGAACGCAGCAA
AGTATGGTGGTCAACTGAACACGACGCCAGAAACGAATTACATTCGTCCT
CACCACAGCCACATGAACGCGACGCAGCAATTGAAGATAAGGAGAGTGGC
CAGTGGCCATCCCAACAATACCTGGACGAATGGGCTGTAGAGCGCGAAGG
AAGTGCTGGGGAAATGGAGCCCGCGTTAGATAACCGTTGGCGTATTCATC
AAGATGTAGAAAAAAAGGACCAAATAACACCGCTAATGAATTGTAGTAAA
GCCCAACACCTTCATGGTGCACAGGAAAGTATCGGTGATGAAAACAGCCA
GGTCAAAACgaagaagaagaaaagaaagaagaagaagaagaaagcagaga
aACCGACTGAGAGGCCCCTTACGAGGAAAGAATACAGCAGCAACGATGAA
TATGATAAGTTCCCTGGTTCTTGGAATGAAAGGAATTGCTTTAGGGAAAG
ACATGATTCAAAGTGGAATCATCATACGCATGCTGCACAGAAAGAAAGCA
CAGCCGATGCGGCAAGCTCCATGCAGAACGAAAATCTGGATGCCTCGACT
ATGGGAGGTAAACTGATGGACAAGCGTTTAGAGAAAGGCAATCCTTACGC
TATTAACTCAAACCACATTAATCAAAGTTCAAGCGCAGTAGAGGTGCAAA
ACAGCAACAATAGCTACATGTATGATGGCCTACAACAGGAGAATAGCTGG
AATATAGAAGAAAACAGCTTGATCAATAGGGACTCTAAATGGGATGAAAA
CGAACCCGAAGAGCAAAAGAATCATGATATCTGGCATGAATATGAGCTCG
AAGCGCAACAGAATCATGATATGGTGGAAAACAATAAGAAAGATAGCAGT
CAAACCGAACAGGGAGACGATGACAAAAGCGTTCGAACCTTGAACGATAG
GGAAGGAAAGAATCGAGGGACACGAAAAAAATTAAAGGCTCGGAGGGGAA
CTATCAAAGGTGATGAAGTACATCAACACGGCTCCAATCAGGGAGGTCGG
GACCTAAGTGTGCTATTAGCACAACCTTTCTCTGACAGAAGGAAACAGGG
ACGAGATTCAAACAAGAAATGGAGAGGGGAGAAGAACTTGGACGCAAAGA
AATCTTACGGGAAGGGGAAAGGAAGAAACAATAGGGGGAACAATtgcaac
agagacttctgacggaggcgagtaggagctgacagtgagtggagctcggc
gcacggaaacaggccagcgtgacctggaaatgcaggcaccgtgcacacag
tcgcgtaatctagcccggaagcactcaggagagtgatgtcgtggcgggtc
aattgtagttttgtagttacttctagagtgcaactccaggcggcggtgtt
cccgccactttgggagagggctgacacgcaatggagcgcgctttaagcgc
tgacatgcagccgacggggaacttcaccccttcaaatagcctggagggcg
agacagtagtcgaccctcggaggaggggtatcgaagaacagacgaaagga
cgatcagtaaacatCAGTTGTTAAAACAATAGCTCAAGGGCTAGCCAACA
CGATTCTTCGAAAAGGTGGAGAGGACAGGTCGACGATGGAAGTGAAAGGG
AAAGCACAGAATGCGATGCTTGGGAGGCTATTGAAAACCAAGACGCCTGG
AACGGAGAATCCCCGTATGATGAAAGTGATTTCCGTGGCTTTGGTATTGC
AAAGGACCCTGAAAAAAGTTCTAAAGAGCAGAGAGAGACGATGAAAACTA
TCCAGGAAATGAAGTCAACAGAGGATTCTGATTTAAAGGCCTGGAAAAGC
AGTGGAGAAGAAAATGCTCCGCGTATGTCTGGATTTGATATTTCCTGCGA
CAGAACTCTGATGGGGAAAGGATGGGGACGGCTTGGATCAGAAGAGAAGG
GAATTCCGTCAGATTCTTGGTTAAATGCAGGCGAGAGCCCGCTATCTTTC
GCGAATGAAGCGACGAAGGATATGTGGGCACTTCCAGCGACAGAAGCTAA
TGAAGAAGAGACGGACAGTGCAGACCTGACACCGCAGCAGATTCGGGAGA
AGACCGATTTTATCGGCCGTGAACAGGTTGTTTATGACTTGAGCGATGTG
TAG

Coding sequence (CDS) from alignment at tig00000842_pilon:1424712..1427314+

>Ggra5714.t1 ID=Ggra5714.t1|Name=Ggra5714.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2037bp|location=Sequence derived from alignment at tig00000842_pilon:1424712..1427314+ (Gracilaria gracilis GNS1m male)
ATGATACCGCAACCCATTCCACAATCTCCAAAACCTCCCTCCGAATCGCA
ACAAACCATCCATCTCGACCCAAACGCTGCAGAATTTGTACCGGCGAGCG
TAGAGCAACCTCACCATCATTTGCTCCAGTCGTCTAGTTTAAATCCCAAT
GCACCAGAGTTTGTCCCTGGTCGGCCTGCACCAACAACCCCACAAATTTG
TTTAAACCCTGCTGCCGAAGAGTTCGTGCCATTCCACCACCACGCTCTTC
TCTACGCGCAACAATGCGTCTCCAATCCTTCTATTCACCCCCATCTTCAG
CTGCTGCCCCCGACTTTTGAAACAAAAGCTTCGAATCTTTCCTCCATATC
GCTGAACCCTGAAGCTGATGAATTTGTACCTGCTTCGCTCACAAAGCCTG
ACGTGCATTTCGAATGGTCTGAGCCTCAGAACTCCACATGTGCTTGGGAC
CTACCGCCCCCTTCGGACACAAGCTCTGAAGAAGCGCTTGAACGCAGCAA
AGTATGGTGGTCAACTGAACACGACGCCAGAAACGAATTACATTCGTCCT
CACCACAGCCACATGAACGCGACGCAGCAATTGAAGATAAGGAGAGTGGC
CAGTGGCCATCCCAACAATACCTGGACGAATGGGCTGTAGAGCGCGAAGG
AAGTGCTGGGGAAATGGAGCCCGCGTTAGATAACCGTTGGCGTATTCATC
AAGATGTAGAAAAAAAGGACCAAATAACACCGCTAATGAATTGTAGTAAA
GCCCAACACCTTCATGGTGCACAGGAAAGTATCGGTGATGAAAACAGCCA
GGTCAAAACgaagaagaagaaaagaaagaagaagaagaagaaagcagaga
aACCGACTGAGAGGCCCCTTACGAGGAAAGAATACAGCAGCAACGATGAA
TATGATAAGTTCCCTGGTTCTTGGAATGAAAGGAATTGCTTTAGGGAAAG
ACATGATTCAAAGTGGAATCATCATACGCATGCTGCACAGAAAGAAAGCA
CAGCCGATGCGGCAAGCTCCATGCAGAACGAAAATCTGGATGCCTCGACT
ATGGGAGGTAAACTGATGGACAAGCGTTTAGAGAAAGGCAATCCTTACGC
TATTAACTCAAACCACATTAATCAAAGTTCAAGCGCAGTAGAGGTGCAAA
ACAGCAACAATAGCTACATGTATGATGGCCTACAACAGGAGAATAGCTGG
AATATAGAAGAAAACAGCTTGATCAATAGGGACTCTAAATGGGATGAAAA
CGAACCCGAAGAGCAAAAGAATCATGATATCTGGCATGAATATGAGCTCG
AAGCGCAACAGAATCATGATATGGTGGAAAACAATAAGAAAGATAGCAGT
CAAACCGAACAGGGAGACGATGACAAAAGCGTTCGAACCTTGAACGATAG
GGAAGGAAAGAATCGAGGGACACGAAAAAAATTAAAGGCTCGGAGGGGAA
CTATCAAAGGTGATGAAGTACATCAACACGGCTCCAATCAGGGAGGTCGG
GACCTAAGACAGGTCGACGATGGAAGTGAAAGGGAAAGCACAGAATGCGA
TGCTTGGGAGGCTATTGAAAACCAAGACGCCTGGAACGGAGAATCCCCGT
ATGATGAAAGTGATTTCCGTGGCTTTGGTATTGCAAAGGACCCTGAAAAA
AGTTCTAAAGAGCAGAGAGAGACGATGAAAACTATCCAGGAAATGAAGTC
AACAGAGGATTCTGATTTAAAGGCCTGGAAAAGCAGTGGAGAAGAAAATG
CTCCGCGTATGTCTGGATTTGATATTTCCTGCGACAGAACTCTGATGGGG
AAAGGATGGGGACGGCTTGGATCAGAAGAGAAGGGAATTCCGTCAGATTC
TTGGTTAAATGCAGGCGAGAGCCCGCTATCTTTCGCGAATGAAGCGACGA
AGGATATGTGGGCACTTCCAGCGACAGAAGCTAATGAAGAAGAGACGGAC
AGTGCAGACCTGACACCGCAGCAGATTCGGGAGAAGACCGATTTTATCGG
CCGTGAACAGGTTGTTTATGACTTGAGCGATGTGTAG