Ggra5555.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5555.t1
Unique NameGgra5555.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length250
Homology
BLAST of Ggra5555.t1 vs. uniprot
Match: R7Q4T8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4T8_CHOCR)

HSP 1 Score: 156 bits (394), Expect = 9.090e-40
Identity = 90/225 (40.00%), Postives = 129/225 (57.33%), Query Frame = 0
Query:   17 MRIMGDQHGSAESLYKNLSNA--WMLKSLTEQIRSPLFSRVMMQREFADKMFRPVQLLQTVLADGCLFEADVISLELKAQCIIIISLRLTDRDVRSTTKLRVIERRMKIRMLEFDQDRLGALETKDPKRGTRLREAIEAGEVSMEREVPFTIRACKSAMSISPLTHLNFGIISVGEQRDKAFNIVNLSETPLLYEIRKSGAPNSRDLRFNLGPSFHSAISPYHSK 239
            +R +G+   S ES  + L+     ML S+        FS    +  ++D+ FRP + LQ  L DG L +  +++L   A+ ++++++ L D DV+  TK R IE+ + ++MLEFD  R       + K   R+    E    SM R +  T+ ACKS M I+PL+ LNFG I+ GEQ+DK F+IVNLSE PLLYEIRK+ A +S  LRFNLG      + PY SK
Sbjct:  764 LRTVGESRRSWESFLRQLTERDYAMLDSMPM-----FFSNYASEMSYSDRQFRPARRLQGALQDGLLEDTGIVTLGAGAEQLLVVTMNLCDMDVKGKTKTRPIEKELTVQMLEFDHTRFSDAAPTNSKEVNRMARLFEVDGDSMPRALILTVHACKSRMKIAPLSQLNFGRIACGEQKDKTFSIVNLSEAPLLYEIRKANAESSDQLRFNLGKGTRGVVRPYLSK 983          
BLAST of Ggra5555.t1 vs. uniprot
Match: L1I4X8 (EF-hand domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I4X8_GUITC)

HSP 1 Score: 67.0 bits (162), Expect = 5.380e-9
Identity = 53/190 (27.89%), Postives = 92/190 (48.42%), Query Frame = 0
Query:   28 ESLYKNLSNAWMLKSLTEQIRSPLFSRVMMQREFADKMFRPVQLLQTVLADGCLFEADVISLELKAQCIIIISL----RLTDRDVRSTTKLRVIERRMKIRMLEFDQDRLGALETKDPKRGTRLREAIEAGEVSMEREVPFTIRACKSAMSISPLTHLNFGIISVGEQRDKAFNIVNLSETPLLYEIRKS 213
            ESL +   N+      T    + L  +V +++  + K       L  V+ DG L     IS+  +  C ++  L    R+T+ D R   K+R +++ +KI+++E+DQ+    L+     RG  +    +  +   ER +P T + C+S M ++   H+NFG +       K   I NLS+ PL+YEI K+
Sbjct:   18 ESLKERYENSSFFAMATRYFNTALEEQVYIEQYNSLKAD-----LDKVIKDGILSPVRRISIPARESCNLVAVLTAPNRVTEGDSRQVGKIRRMDKAIKIKLIEYDQE---LLDRAMYHRGRLVTYTPDVSQEIPERILPITAKVCRSIMEVAQ-RHINFGTVLAKNDYAKKLIIKNLSDVPLMYEIVKN 198          
The following BLAST results are available for this feature:
BLAST of Ggra5555.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7Q4T89.090e-4040.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
L1I4X85.380e-927.89EF-hand domain-containing protein n=2 Tax=Guillard... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR39211CHROMOSOME 7, WHOLE GENOME SHOTGUN SEQUENCEcoord: 44..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:921432..922181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5555.t1Ggra5555.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 921432..922181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5555.t1 ID=Ggra5555.t1|Name=Ggra5555.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=250bp
MVKRICMTRHYTRGLSMRIMGDQHGSAESLYKNLSNAWMLKSLTEQIRSP
LFSRVMMQREFADKMFRPVQLLQTVLADGCLFEADVISLELKAQCIIIIS
LRLTDRDVRSTTKLRVIERRMKIRMLEFDQDRLGALETKDPKRGTRLREA
IEAGEVSMEREVPFTIRACKSAMSISPLTHLNFGIISVGEQRDKAFNIVN
LSETPLLYEIRKSGAPNSRDLRFNLGPSFHSAISPYHSKWFHSSRKRNY*
back to top