Ggra5672.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5672.t1
Unique NameGgra5672.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1312955..1315324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr47828
Max annot lvl2836|Bacillariophyta
Evalue1.01e-06
EggNOG OGs2ESQ4@1|root,2SV7P@2759|Eukaryota,2XDWX@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5672Ggra5672Gracilaria gracilis GNS1m malegenetig00000842_pilon 1312955..1315324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5672.t1Ggra5672.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1312955..1315324 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5672.t1.stop1Ggra5672.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1312955..1312957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5672.t1.CDS1Ggra5672.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1312955..1313660 -
Ggra5672.t1.CDS2Ggra5672.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1314564..1315324 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5672.t1.exon1Ggra5672.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1312955..1313660 -
Ggra5672.t1.exon2Ggra5672.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1314564..1315324 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5672.t1.intron1Ggra5672.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1313661..1314563 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5672.t1.start1Ggra5672.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1315322..1315324 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5672.t1 ID=Ggra5672.t1|Name=Ggra5672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp
MSNIKDKEKFGSLPRFKIASTPNSDNNGTRRKKKISRVLSKVRFRELETC
SEDENEARHTQSEGNASTPGWRGGVPRSPRSTHTGNSQDGQNAMNPSKLG
ESRKKQGSDDRVRSEALPKRHSKYSPGRRASGRISLGLLPPTLQSVREMS
YSTRNTREADLRHDRRKSWDIMRSHSERFGKEPNKQSIRDESKVRSWGNR
KGEETSDGDKSPKCERGSIEAIFRSTSTFSNSEGDSISLKGFFQNLIALE
NETLDFPYFVHKHLFQQQFEPVFLSRNSLALFIAHTSTQTIHRQRRKGVN
QVEKLVRRFPMAAFLSSPNCIGWKFTNTLSRAKTSRVTPSYHVSRKTVRC
KLAVNKITNKSFQLEEDEDAVSTTSAVYLSSDGTLSIGKTDGPTPEKVSA
TWKYSDSDGELLVDIERFYEEGSIKFSVKRVLRGHLDDSRKNLVDLPVFS
GGMYQHPADFSPNSEVGWFNMILATDDLPSDDFDISVQ*
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spliced messenger RNA

>Ggra5672.t1 ID=Ggra5672.t1|Name=Ggra5672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000842_pilon:1312955..1315324- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAACATAAAAGATAAAGAGAAGTTCGGTTCGCTTCCGCGGTTCAA
AATTGCCTCCACACCAAACTCAGACAACAATGGAACAAGACGCAAGAAGA
AGATTTCGCGAGTTCTATCCAAAGTGCGCTTTCGTGAGCTCGAAACCTGC
AGTGAGGACGAAAACGAAGCTCGGCATACCCAGAGCGAAGGAAATGCTTC
TACCCCGGGTTGGAGAGGAGGGGTTCCTCGGTCACCGCGAAGTACTCACA
CTGGAAATTCCCAAGATGGTCAGAATGCAATGAATCCTTCTAAACTGGGA
GAATCAAGGAAGAAACAGGGATCAGATGATCGTGTTCGCAGTGAGGCTCT
ACCAAAGCGACACAGCAAGTATTCTCCTGGAAGAAGAGCATCTGGTAGAA
TATCTCTCGGACTCTTACCACCTACACTTCAATCCGTGCGAGAAATGAGT
TACTCAACCAGGAACACTCGAGAGGCTGATCTTCGACATGATCGTAGAAA
GTCATGGGACATTATGCGCTCCCATTCAGAGCGATTTGGAAAGGAACCGA
ACAAGCAATCGATTCGGGACGAAAGCAAAGTTCGCTCTTGGGGTAACCGT
AAAGGTGAAGAAACCTCTGATGGGGACAAGTCTCCCAAGTGTGAACGTGG
GTCGATTGAGGCAATCTTCAGAAGCACTTCCACGTTCTCTAATTCTGAAG
GTGATTCGATTTCCTTAAAAGGATTCTTCCAGAATCTTATCGCCTTGGAA
AATGAAACTTTAGACTTCCCATATTTCGTGCATAAACATTTGTTTCAACA
ACAGTTCGAACCAGTATTTCTGTCGCGAAACTCTTTGGCTTTGTTCATTG
CGCACACCTCAACTCAAACCATCCACCGCCAGCGTCGTAAAGGAGTAAAC
CAGGTTGAGAAGCTTGTCAGACGGTTTCCAATGGCAGCTTTTCTCAGCTC
ACCGAATTGTATTGGTTGGAAATTCACCAATACGCTTAGCCGTGCCAAGA
CCTCAAGGGTCACGCCGTCATATCATGTGAGCAGGAAAACGGTACGATGC
AAGTTAGCTGTGAATAAGATTACGAACAAATCGTTCCAACTGGAGGAGGA
TGAGGACGCAGTGTCAACTACGTCTGCGGTCTACCTATCCTCGGACGGCA
CTTTGTCAATTGGAAAAACGGATGGGCCGACGCCAGAAAAAGTCAGCGCA
ACATGGAAGTATTCAGATTCTGACGGCGAGCTGCTGGTAGATATTGAGAG
ATTCTACGAGGAGGGCAGCATTAAATTCTCTGTCAAACGGGTTTTGCGTG
GTCACCTTGATGACAGTAGAAAGAATCTAGTAGACCTACCTGTTTTCTCT
GGCGGCATGTATCAACACCCTGCTGACTTCAGTCCGAATTCCGAGGTGGG
ATGGTTTAACATGATATTGGCTACTGACGACCTTCCTTCTGACGACTTTG
ACATCTCCGTTCAGTGA
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protein sequence of Ggra5672.t1

>Ggra5672.t1 ID=Ggra5672.t1|Name=Ggra5672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=489bp
MSNIKDKEKFGSLPRFKIASTPNSDNNGTRRKKKISRVLSKVRFRELETC
SEDENEARHTQSEGNASTPGWRGGVPRSPRSTHTGNSQDGQNAMNPSKLG
ESRKKQGSDDRVRSEALPKRHSKYSPGRRASGRISLGLLPPTLQSVREMS
YSTRNTREADLRHDRRKSWDIMRSHSERFGKEPNKQSIRDESKVRSWGNR
KGEETSDGDKSPKCERGSIEAIFRSTSTFSNSEGDSISLKGFFQNLIALE
NETLDFPYFVHKHLFQQQFEPVFLSRNSLALFIAHTSTQTIHRQRRKGVN
QVEKLVRRFPMAAFLSSPNCIGWKFTNTLSRAKTSRVTPSYHVSRKTVRC
KLAVNKITNKSFQLEEDEDAVSTTSAVYLSSDGTLSIGKTDGPTPEKVSA
TWKYSDSDGELLVDIERFYEEGSIKFSVKRVLRGHLDDSRKNLVDLPVFS
GGMYQHPADFSPNSEVGWFNMILATDDLPSDDFDISVQ*
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mRNA from alignment at tig00000842_pilon:1312955..1315324-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5672.t1 ID=Ggra5672.t1|Name=Ggra5672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2370bp|location=Sequence derived from alignment at tig00000842_pilon:1312955..1315324- (Gracilaria gracilis GNS1m male)
ATGTCGAACATAAAAGATAAAGAGAAGTTCGGTTCGCTTCCGCGGTTCAA
AATTGCCTCCACACCAAACTCAGACAACAATGGAACAAGACGCAAGAAGA
AGATTTCGCGAGTTCTATCCAAAGTGCGCTTTCGTGAGCTCGAAACCTGC
AGTGAGGACGAAAACGAAGCTCGGCATACCCAGAGCGAAGGAAATGCTTC
TACCCCGGGTTGGAGAGGAGGGGTTCCTCGGTCACCGCGAAGTACTCACA
CTGGAAATTCCCAAGATGGTCAGAATGCAATGAATCCTTCTAAACTGGGA
GAATCAAGGAAGAAACAGGGATCAGATGATCGTGTTCGCAGTGAGGCTCT
ACCAAAGCGACACAGCAAGTATTCTCCTGGAAGAAGAGCATCTGGTAGAA
TATCTCTCGGACTCTTACCACCTACACTTCAATCCGTGCGAGAAATGAGT
TACTCAACCAGGAACACTCGAGAGGCTGATCTTCGACATGATCGTAGAAA
GTCATGGGACATTATGCGCTCCCATTCAGAGCGATTTGGAAAGGAACCGA
ACAAGCAATCGATTCGGGACGAAAGCAAAGTTCGCTCTTGGGGTAACCGT
AAAGGTGAAGAAACCTCTGATGGGGACAAGTCTCCCAAGTGTGAACGTGG
GTCGATTGAGGCAATCTTCAGAAGCACTTCCACGTTCTCTAATTCTGAAG
GTGATTCGATTTCCTTAAAAGGATTCTTCCAGAATCTTATCGCCTTGGAA
AATGAAACTTTGTAAGGTTTAGAGGAGTCTGCTAGTGAGTACTTTGGCTC
CCTGTTCAAGACGTGTGATCTTGACTCCTGATAACACGGATCTATACTTC
ATCCTCATTCAGAGCAGAGCCTTGTGTATTTGTATTTGCTCTCTCTGTTA
CGTGAAGATGAATTGATTGACAAAACAAGTTATCTCGATCGACAACGGCG
GTGTCCAGAGGCCTCTGCGTGAGAATCTTGTATTGCTGGTGTCCATTTTG
GCAATATGCAAAACTTGCACAATCAGCCATGTGTTTTAATTATATCTATC
GGGTTTGGTGAGATATCATTTAGAAATCGAGGCTGGGCAAACTGCAGGCA
ACGGTACCCAGTTCTTGAGCTCAACCATACCTTTAGCTAAAATATTGTAG
CGTAGACGAGGAAACTGTGTTTCCAAACTAACTGTATGCGCTTCTAACAT
TCGAGCAACTTGATGCTCTGTTGCCCCGAAAAAGAAAATGTCAGAGTTTT
TCTAAACACCATGTTGAACAATGAGTACCTGTCTAGAACGCTGAAGTCGC
ATAATTGCAGTTTCTTGTCGGACACACGCTAATACTAGATACCCATTTGG
ACCGGCTGGGACAGGAAAAAGGAGGCTTTGCGGCTCTCTGAATGTTGAGA
GAGCTCTATTACCTCCCTGATCACTCAGGAATCCTGAATACGCATCTGCG
AGGTGTGATTCGAAACGTCTTCAGATTAATTACTACTTTGATTTCGTAAG
AATGAACAATAAAATAAACCGCTCAGATTTTTGTGGTGAATCGATGATTG
TCGAAACGAGTGGATGATCTCCTTCGTTCATCTCGTCAAGGGGCTGGACC
AGATAATATCATTGGCAAGCTGCACTAGCTTGCAAACCGACATCAAGTCT
TGGCTGTTTCTCAGAGACTTCCCATATTTCGTGCATAAACATTTGTTTCA
ACAACAGTTCGAACCAGTATTTCTGTCGCGAAACTCTTTGGCTTTGTTCA
TTGCGCACACCTCAACTCAAACCATCCACCGCCAGCGTCGTAAAGGAGTA
AACCAGGTTGAGAAGCTTGTCAGACGGTTTCCAATGGCAGCTTTTCTCAG
CTCACCGAATTGTATTGGTTGGAAATTCACCAATACGCTTAGCCGTGCCA
AGACCTCAAGGGTCACGCCGTCATATCATGTGAGCAGGAAAACGGTACGA
TGCAAGTTAGCTGTGAATAAGATTACGAACAAATCGTTCCAACTGGAGGA
GGATGAGGACGCAGTGTCAACTACGTCTGCGGTCTACCTATCCTCGGACG
GCACTTTGTCAATTGGAAAAACGGATGGGCCGACGCCAGAAAAAGTCAGC
GCAACATGGAAGTATTCAGATTCTGACGGCGAGCTGCTGGTAGATATTGA
GAGATTCTACGAGGAGGGCAGCATTAAATTCTCTGTCAAACGGGTTTTGC
GTGGTCACCTTGATGACAGTAGAAAGAATCTAGTAGACCTACCTGTTTTC
TCTGGCGGCATGTATCAACACCCTGCTGACTTCAGTCCGAATTCCGAGGT
GGGATGGTTTAACATGATATTGGCTACTGACGACCTTCCTTCTGACGACT
TTGACATCTCCGTTCAGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1312955..1315324-

>Ggra5672.t1 ID=Ggra5672.t1|Name=Ggra5672.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1467bp|location=Sequence derived from alignment at tig00000842_pilon:1312955..1315324- (Gracilaria gracilis GNS1m male)
ATGTCGAACATAAAAGATAAAGAGAAGTTCGGTTCGCTTCCGCGGTTCAA
AATTGCCTCCACACCAAACTCAGACAACAATGGAACAAGACGCAAGAAGA
AGATTTCGCGAGTTCTATCCAAAGTGCGCTTTCGTGAGCTCGAAACCTGC
AGTGAGGACGAAAACGAAGCTCGGCATACCCAGAGCGAAGGAAATGCTTC
TACCCCGGGTTGGAGAGGAGGGGTTCCTCGGTCACCGCGAAGTACTCACA
CTGGAAATTCCCAAGATGGTCAGAATGCAATGAATCCTTCTAAACTGGGA
GAATCAAGGAAGAAACAGGGATCAGATGATCGTGTTCGCAGTGAGGCTCT
ACCAAAGCGACACAGCAAGTATTCTCCTGGAAGAAGAGCATCTGGTAGAA
TATCTCTCGGACTCTTACCACCTACACTTCAATCCGTGCGAGAAATGAGT
TACTCAACCAGGAACACTCGAGAGGCTGATCTTCGACATGATCGTAGAAA
GTCATGGGACATTATGCGCTCCCATTCAGAGCGATTTGGAAAGGAACCGA
ACAAGCAATCGATTCGGGACGAAAGCAAAGTTCGCTCTTGGGGTAACCGT
AAAGGTGAAGAAACCTCTGATGGGGACAAGTCTCCCAAGTGTGAACGTGG
GTCGATTGAGGCAATCTTCAGAAGCACTTCCACGTTCTCTAATTCTGAAG
GTGATTCGATTTCCTTAAAAGGATTCTTCCAGAATCTTATCGCCTTGGAA
AATGAAACTTTAGACTTCCCATATTTCGTGCATAAACATTTGTTTCAACA
ACAGTTCGAACCAGTATTTCTGTCGCGAAACTCTTTGGCTTTGTTCATTG
CGCACACCTCAACTCAAACCATCCACCGCCAGCGTCGTAAAGGAGTAAAC
CAGGTTGAGAAGCTTGTCAGACGGTTTCCAATGGCAGCTTTTCTCAGCTC
ACCGAATTGTATTGGTTGGAAATTCACCAATACGCTTAGCCGTGCCAAGA
CCTCAAGGGTCACGCCGTCATATCATGTGAGCAGGAAAACGGTACGATGC
AAGTTAGCTGTGAATAAGATTACGAACAAATCGTTCCAACTGGAGGAGGA
TGAGGACGCAGTGTCAACTACGTCTGCGGTCTACCTATCCTCGGACGGCA
CTTTGTCAATTGGAAAAACGGATGGGCCGACGCCAGAAAAAGTCAGCGCA
ACATGGAAGTATTCAGATTCTGACGGCGAGCTGCTGGTAGATATTGAGAG
ATTCTACGAGGAGGGCAGCATTAAATTCTCTGTCAAACGGGTTTTGCGTG
GTCACCTTGATGACAGTAGAAAGAATCTAGTAGACCTACCTGTTTTCTCT
GGCGGCATGTATCAACACCCTGCTGACTTCAGTCCGAATTCCGAGGTGGG
ATGGTTTAACATGATATTGGCTACTGACGACCTTCCTTCTGACGACTTTG
ACATCTCCGTTCAGTGA
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