Ggra5500.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5500.t1
Unique NameGgra5500.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Homology
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BLAST of Ggra5500.t1 vs. uniprot
Match: A0A2V3IZZ1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZZ1_9FLOR)

HSP 1 Score: 135 bits (339), Expect = 3.300e-38
Identity = 73/123 (59.35%), Postives = 80/123 (65.04%), Query Frame = 0 
Query:   14 LLPRAIAECDELDPQACARTCVPFHFGTSKQTNFSCGDWWLRARCCNGTDPIPVVTSVYYECSCEPDGMTTHGLVVILVLAFAAISVVLAAVAYVLYRQKKRXXXXXXERDRAIEEAQVYLPR 136
            L+ R +A C++LDP  CARTCVPFH GT KQ +FSCGDWWLRA CCNGTDPIP+VTS Y+ CSCE  GMTT GLVVI                         XXXXXX    AIEEAQVYLPR
Sbjct:   14 LVTRVLAACNQLDPHQCARTCVPFHAGTPKQADFSCGDWWLRANCCNGTDPIPLVTSTYFTCSCETLGMTTRGLVVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIEEAQVYLPR 136
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BLAST of Ggra5500.t1 vs. uniprot
Match: A0A7S1XIY0 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIY0_9RHOD)

HSP 1 Score: 72.4 bits (176), Expect = 1.240e-13
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:   13 ALLPRAIAECDELDPQACARTCVPFHFGTSKQTNFSCGDWWLRARCCNGTDPIPVVTSVYYECSCEPDGMTTHGLVVILVLAFAAISVVLAAVAYVLYR 111
            A++ +   EC  LD Q CA TCVP   G   +T+F CGDW+ +  CCNGT         Y  CSC+ DG+T  G+ VI+    AA+ +     A+++ R
Sbjct:   38 AIVRQTSGECQALDEQQCADTCVPLDDG---RTDFECGDWFSKETCCNGTIVESFPGRDYIVCSCQSDGLTGAGIGVIVGSILAALGMAGLLAAFIVIR 133
The following BLAST results are available for this feature:
BLAST of Ggra5500.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IZZ13.300e-3859.35Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1XIY01.240e-1338.38Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..131
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 86..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..85
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 111..136
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availableTMHMMTMhelixcoord: 87..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:605913..606480 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5500.t1Ggra5500.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 605913..606480 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5500.t1 ID=Ggra5500.t1|Name=Ggra5500.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MIAPVLLFFLFCALLPRAIAECDELDPQACARTCVPFHFGTSKQTNFSCG
DWWLRARCCNGTDPIPVVTSVYYECSCEPDGMTTHGLVVILVLAFAAISV
VLAAVAYVLYRQKKRAKAEEEERDRAIEEAQVYLPR*
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