Ggra10193.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10193.t1
Unique NameGgra10193.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:59003..59395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002506337.1
PFAMszf-CSL
Max annot lvl3041|Chlorophyta
KEGG koko:K15455
Evalue1.31e-27
EggNOG OGsCOG5216@1|root,KOG2923@2759|Eukaryota,37W44@33090|Viridiplantae,34IKH@3041|Chlorophyta
DescriptionCSL zinc finger
COG categoryS
BRITEko00000,ko03012,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10193Ggra10193Gracilaria gracilis GNS1m malegenetig00000016_pilon 59003..59395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10193.t1Ggra10193.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 59003..59395 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10193.t1.stop1Ggra10193.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 59003..59005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10193.t1.CDS1Ggra10193.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 59003..59248 -
Ggra10193.t1.CDS2Ggra10193.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 59393..59395 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10193.t1.exon1Ggra10193.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 59003..59248 -
Ggra10193.t1.exon2Ggra10193.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 59393..59395 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10193.t1.intron1Ggra10193.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 59249..59392 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10193.t1.start1Ggra10193.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 59393..59395 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10193.t1 ID=Ggra10193.t1|Name=Ggra10193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MPVYDDVDLEDMQWDGGLMAYVYQCPCGDVFQITPAELRAGEEIARCPSC
SLVVRVIYDLDELSDGDGDHDALRVRCLAEEH*
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spliced messenger RNA

>Ggra10193.t1 ID=Ggra10193.t1|Name=Ggra10193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000016_pilon:59003..59395- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTGTATGACGACGTGGATCTGGAGGACATGCAATGGGACGGCGG
GTTGATGGCGTACGTGTACCAGTGTCCGTGCGGTGATGTGTTTCAAATCA
CGCCGGCCGAGCTGCGCGCGGGCGAGGAGATTGCGCGCTGCCCAAGCTGC
TCGCTGGTGGTGCGAGTGATTTATGACTTGGACGAGCTCAGTGACGGTGA
CGGCGACCACGACGCGCTGCGCGTGCGCTGCTTGGCGGAGGAGCACTAA
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protein sequence of Ggra10193.t1

>Ggra10193.t1 ID=Ggra10193.t1|Name=Ggra10193.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MPVYDDVDLEDMQWDGGLMAYVYQCPCGDVFQITPAELRAGEEIARCPSC
SLVVRVIYDLDELSDGDGDHDALRVRCLAEEH*
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mRNA from alignment at tig00000016_pilon:59003..59395-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10193.t1 ID=Ggra10193.t1|Name=Ggra10193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000016_pilon:59003..59395- (Gracilaria gracilis GNS1m male)
ATGGTAAGTTAAGTGCGCGCGCGTTGAAGGCGCGCAACGGCGGCGTGCGT
AGCAGGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCGCCAACTA
ACGACGCGTGTTTGGATGTGCTTTGTGCTTGTGCGCGGCGCGAACAGCCG
GTGTATGACGACGTGGATCTGGAGGACATGCAATGGGACGGCGGGTTGAT
GGCGTACGTGTACCAGTGTCCGTGCGGTGATGTGTTTCAAATCACGCCGG
CCGAGCTGCGCGCGGGCGAGGAGATTGCGCGCTGCCCAAGCTGCTCGCTG
GTGGTGCGAGTGATTTATGACTTGGACGAGCTCAGTGACGGTGACGGCGA
CCACGACGCGCTGCGCGTGCGCTGCTTGGCGGAGGAGCACTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:59003..59395-

>Ggra10193.t1 ID=Ggra10193.t1|Name=Ggra10193.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000016_pilon:59003..59395- (Gracilaria gracilis GNS1m male)
ATGCCGGTGTATGACGACGTGGATCTGGAGGACATGCAATGGGACGGCGG
GTTGATGGCGTACGTGTACCAGTGTCCGTGCGGTGATGTGTTTCAAATCA
CGCCGGCCGAGCTGCGCGCGGGCGAGGAGATTGCGCGCTGCCCAAGCTGC
TCGCTGGTGGTGCGAGTGATTTATGACTTGGACGAGCTCAGTGACGGTGA
CGGCGACCACGACGCGCTGCGCGTGCGCTGCTTGGCGGAGGAGCACTAA
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