Ggra10263.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10263.t1
Unique NameGgra10263.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:283503..284933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo1g001040.1
PFAMsM20_dimer,Peptidase_M20
Max annot lvl35493|Streptophyta
KEGG rclassRC00064,RC00300
KEGG koko:K01436,ko:K14677
KEGG ReactionR00669,R10553
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
GOsGO:0003674,GO:0003824,GO:0004046,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0016787,GO:0016810,GO:0016811,GO:0031982,GO:0042802,GO:0043226,GO:0043227,GO:0043230,GO:0044421,GO:0070062,GO:1903561
Evalue4.51e-108
EggNOG OGsCOG0624@1|root,KOG2275@2759|Eukaryota,37I61@33090|Viridiplantae,3GERC@35493|Streptophyta,3HN81@3699|Brassicales
EC3.5.1.14
DescriptionN-acyl-L-amino-acid amidohydrolase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10263Ggra10263Gracilaria gracilis GNS1m malegenetig00000016_pilon 283503..284933 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10263.t1.start1Ggra10263.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 283503..283505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10263.t1.CDS1Ggra10263.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 283503..284933 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10263.t1.exon1Ggra10263.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 283503..284933 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10263.t1.stop1Ggra10263.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 284931..284933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10263.t1Ggra10263.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 283503..284933 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10263.t1 ID=Ggra10263.t1|Name=Ggra10263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp
MLPSARSIATFFALLIAPILYVGREKISLEVPSAITTVNPAVNRLQEYLR
IRTDHPNPAYLEAQHFLNRTVSALLPNASFSVHSFVPGKPILLIGVDGTK
KQLPALLLNSHTDVVPSEEEMWDWPPYDARTVFRDGQLRVYARGSQDMKS
VGMQYVEAVSELLHTGWRPKRTIYISFVPDEEIGGRDGMGLLVESDLFSR
LQLGVALDEGLPRDDGMFNCYYGERQTWWLAVNVTDRPGHGSNLPESTAA
VTLNQIISRIFRFRDQQLQRLEDGVDMGSIIGVNVAYLKSGYPDEKMSSG
FTMNVIPSVAEAGFDIRVPPTVDPSEVDSEIEGWLACGDKRCPGVTINWV
IKVNNSHITSRDPEENPYATPFMNGLRNAGIADEKLNHGIFRAATDARYL
RMKGIPSFGFSPINKSPNLLHKHNEYLPVDTYMQGIRVYKSIIQEIADYE
PLMTPDTSETQGQETEGVMTEEKEDL*
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spliced messenger RNA

>Ggra10263.t1 ID=Ggra10263.t1|Name=Ggra10263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000016_pilon:283503..284933+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGTCCGCACGCTCTATCGCCACTTTTTTCGCCCTCTTGATAGC
CCCGATTCTCTATGTCGGTCGCGAGAAGATCTCCTTGGAAGTGCCAAGCG
CCATAACCACCGTAAATCCTGCAGTCAATCGTCTTCAAGAATACCTTCGA
ATTCGAACCGATCATCCCAATCCCGCCTACCTTGAAGCACAACACTTTCT
AAATCGAACCGTCAGTGCTTTATTACCAAACGCTTCGTTTTCGGTTCATA
GCTTCGTGCCGGGAAAACCTATATTGCTTATCGGCGTTGACGGAACTAAG
AAGCAACTGCCTGCGCTTCTGCTCAATTCTCATACCGATGTTGTGCCTTC
TGAGGAAGAAATGTGGGATTGGCCTCCGTATGACGCGCGTACTGTGTTTA
GAGATGGTCAGCTTCGAGTTTATGCGCGTGGATCACAGGATATGAAAAGT
GTCGGTATGCAGTATGTAGAAGCTGTTTCAGAGCTTTTGCACACCGGCTG
GCGGCCAAAGCGCACCATATATATATCTTTTGTACCTGATGAAGAGATAG
GTGGCAGAGATGGTATGGGACTGCTTGTCGAAAGTGACCTTTTCTCACGC
CTGCAACTCGGGGTCGCTCTTGATGAAGGTTTGCCCAGAGATGACGGCAT
GTTCAACTGTTACTATGGCGAACGTCAGACGTGGTGGCTGGCTGTTAATG
TCACTGATCGCCCTGGCCACGGTTCCAATCTTCCAGAAAGCACGGCTGCT
GTTACACTGAATCAAATCATTTCAAGAATATTCCGATTCAGAGACCAGCA
GCTGCAGCGTTTGGAAGATGGGGTAGACATGGGAAGCATAATTGGCGTTA
ATGTGGCATACTTAAAGTCGGGATATCCTGATGAGAAGATGTCAAGTGGG
TTTACTATGAACGTCATCCCGTCCGTTGCTGAGGCTGGATTCGACATTCG
CGTTCCGCCAACCGTAGATCCGAGTGAAGTGGACAGTGAAATTGAAGGGT
GGCTTGCGTGTGGTGACAAACGATGTCCTGGCGTAACTATCAATTGGGTT
ATCAAAGTGAACAATTCACATATAACAAGTCGCGATCCAGAGGAGAATCC
GTATGCAACTCCGTTTATGAATGGTCTCAGGAATGCGGGAATTGCTGATG
AAAAGCTCAACCATGGCATCTTCAGAGCTGCTACTGACGCCAGATATTTG
AGAATGAAGGGAATCCCGAGCTTTGGATTTTCTCCTATAAACAAGTCACC
GAACTTGTTGCATAAGCACAATGAATACCTTCCTGTCGATACCTACATGC
AAGGCATTCGTGTATATAAGAGCATTATTCAGGAAATAGCTGATTATGAA
CCATTGATGACTCCTGACACATCTGAAACTCAAGGGCAAGAAACTGAAGG
AGTGATGACCGAGGAGAAGGAGGACCTATGA
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protein sequence of Ggra10263.t1

>Ggra10263.t1 ID=Ggra10263.t1|Name=Ggra10263.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=477bp
MLPSARSIATFFALLIAPILYVGREKISLEVPSAITTVNPAVNRLQEYLR
IRTDHPNPAYLEAQHFLNRTVSALLPNASFSVHSFVPGKPILLIGVDGTK
KQLPALLLNSHTDVVPSEEEMWDWPPYDARTVFRDGQLRVYARGSQDMKS
VGMQYVEAVSELLHTGWRPKRTIYISFVPDEEIGGRDGMGLLVESDLFSR
LQLGVALDEGLPRDDGMFNCYYGERQTWWLAVNVTDRPGHGSNLPESTAA
VTLNQIISRIFRFRDQQLQRLEDGVDMGSIIGVNVAYLKSGYPDEKMSSG
FTMNVIPSVAEAGFDIRVPPTVDPSEVDSEIEGWLACGDKRCPGVTINWV
IKVNNSHITSRDPEENPYATPFMNGLRNAGIADEKLNHGIFRAATDARYL
RMKGIPSFGFSPINKSPNLLHKHNEYLPVDTYMQGIRVYKSIIQEIADYE
PLMTPDTSETQGQETEGVMTEEKEDL*
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mRNA from alignment at tig00000016_pilon:283503..284933+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10263.t1 ID=Ggra10263.t1|Name=Ggra10263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000016_pilon:283503..284933+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGTCCGCACGCTCTATCGCCACTTTTTTCGCCCTCTTGATAGC
CCCGATTCTCTATGTCGGTCGCGAGAAGATCTCCTTGGAAGTGCCAAGCG
CCATAACCACCGTAAATCCTGCAGTCAATCGTCTTCAAGAATACCTTCGA
ATTCGAACCGATCATCCCAATCCCGCCTACCTTGAAGCACAACACTTTCT
AAATCGAACCGTCAGTGCTTTATTACCAAACGCTTCGTTTTCGGTTCATA
GCTTCGTGCCGGGAAAACCTATATTGCTTATCGGCGTTGACGGAACTAAG
AAGCAACTGCCTGCGCTTCTGCTCAATTCTCATACCGATGTTGTGCCTTC
TGAGGAAGAAATGTGGGATTGGCCTCCGTATGACGCGCGTACTGTGTTTA
GAGATGGTCAGCTTCGAGTTTATGCGCGTGGATCACAGGATATGAAAAGT
GTCGGTATGCAGTATGTAGAAGCTGTTTCAGAGCTTTTGCACACCGGCTG
GCGGCCAAAGCGCACCATATATATATCTTTTGTACCTGATGAAGAGATAG
GTGGCAGAGATGGTATGGGACTGCTTGTCGAAAGTGACCTTTTCTCACGC
CTGCAACTCGGGGTCGCTCTTGATGAAGGTTTGCCCAGAGATGACGGCAT
GTTCAACTGTTACTATGGCGAACGTCAGACGTGGTGGCTGGCTGTTAATG
TCACTGATCGCCCTGGCCACGGTTCCAATCTTCCAGAAAGCACGGCTGCT
GTTACACTGAATCAAATCATTTCAAGAATATTCCGATTCAGAGACCAGCA
GCTGCAGCGTTTGGAAGATGGGGTAGACATGGGAAGCATAATTGGCGTTA
ATGTGGCATACTTAAAGTCGGGATATCCTGATGAGAAGATGTCAAGTGGG
TTTACTATGAACGTCATCCCGTCCGTTGCTGAGGCTGGATTCGACATTCG
CGTTCCGCCAACCGTAGATCCGAGTGAAGTGGACAGTGAAATTGAAGGGT
GGCTTGCGTGTGGTGACAAACGATGTCCTGGCGTAACTATCAATTGGGTT
ATCAAAGTGAACAATTCACATATAACAAGTCGCGATCCAGAGGAGAATCC
GTATGCAACTCCGTTTATGAATGGTCTCAGGAATGCGGGAATTGCTGATG
AAAAGCTCAACCATGGCATCTTCAGAGCTGCTACTGACGCCAGATATTTG
AGAATGAAGGGAATCCCGAGCTTTGGATTTTCTCCTATAAACAAGTCACC
GAACTTGTTGCATAAGCACAATGAATACCTTCCTGTCGATACCTACATGC
AAGGCATTCGTGTATATAAGAGCATTATTCAGGAAATAGCTGATTATGAA
CCATTGATGACTCCTGACACATCTGAAACTCAAGGGCAAGAAACTGAAGG
AGTGATGACCGAGGAGAAGGAGGACCTATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:283503..284933+

>Ggra10263.t1 ID=Ggra10263.t1|Name=Ggra10263.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00000016_pilon:283503..284933+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGTCCGCACGCTCTATCGCCACTTTTTTCGCCCTCTTGATAGC
CCCGATTCTCTATGTCGGTCGCGAGAAGATCTCCTTGGAAGTGCCAAGCG
CCATAACCACCGTAAATCCTGCAGTCAATCGTCTTCAAGAATACCTTCGA
ATTCGAACCGATCATCCCAATCCCGCCTACCTTGAAGCACAACACTTTCT
AAATCGAACCGTCAGTGCTTTATTACCAAACGCTTCGTTTTCGGTTCATA
GCTTCGTGCCGGGAAAACCTATATTGCTTATCGGCGTTGACGGAACTAAG
AAGCAACTGCCTGCGCTTCTGCTCAATTCTCATACCGATGTTGTGCCTTC
TGAGGAAGAAATGTGGGATTGGCCTCCGTATGACGCGCGTACTGTGTTTA
GAGATGGTCAGCTTCGAGTTTATGCGCGTGGATCACAGGATATGAAAAGT
GTCGGTATGCAGTATGTAGAAGCTGTTTCAGAGCTTTTGCACACCGGCTG
GCGGCCAAAGCGCACCATATATATATCTTTTGTACCTGATGAAGAGATAG
GTGGCAGAGATGGTATGGGACTGCTTGTCGAAAGTGACCTTTTCTCACGC
CTGCAACTCGGGGTCGCTCTTGATGAAGGTTTGCCCAGAGATGACGGCAT
GTTCAACTGTTACTATGGCGAACGTCAGACGTGGTGGCTGGCTGTTAATG
TCACTGATCGCCCTGGCCACGGTTCCAATCTTCCAGAAAGCACGGCTGCT
GTTACACTGAATCAAATCATTTCAAGAATATTCCGATTCAGAGACCAGCA
GCTGCAGCGTTTGGAAGATGGGGTAGACATGGGAAGCATAATTGGCGTTA
ATGTGGCATACTTAAAGTCGGGATATCCTGATGAGAAGATGTCAAGTGGG
TTTACTATGAACGTCATCCCGTCCGTTGCTGAGGCTGGATTCGACATTCG
CGTTCCGCCAACCGTAGATCCGAGTGAAGTGGACAGTGAAATTGAAGGGT
GGCTTGCGTGTGGTGACAAACGATGTCCTGGCGTAACTATCAATTGGGTT
ATCAAAGTGAACAATTCACATATAACAAGTCGCGATCCAGAGGAGAATCC
GTATGCAACTCCGTTTATGAATGGTCTCAGGAATGCGGGAATTGCTGATG
AAAAGCTCAACCATGGCATCTTCAGAGCTGCTACTGACGCCAGATATTTG
AGAATGAAGGGAATCCCGAGCTTTGGATTTTCTCCTATAAACAAGTCACC
GAACTTGTTGCATAAGCACAATGAATACCTTCCTGTCGATACCTACATGC
AAGGCATTCGTGTATATAAGAGCATTATTCAGGAAATAGCTGATTATGAA
CCATTGATGACTCCTGACACATCTGAAACTCAAGGGCAAGAAACTGAAGG
AGTGATGACCGAGGAGAAGGAGGACCTATGA
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