Ggra5600.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5600.t2
Unique NameGgra5600.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length569
Homology
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BLAST of Ggra5600.t2 vs. uniprot
Match: A0A2V3IY16 (Cytochrome c oxidase assembly factor 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY16_9FLOR)

HSP 1 Score: 321 bits (823), Expect = 5.190e-93
Identity = 166/339 (48.97%), Postives = 243/339 (71.68%), Query Frame = 0 
Query:    2 SHFVELPVKRVQTVSYKKAEDAVLMHTSLLVQDAVRN-----HYNHSNGTSSLVLEESAVDLMMRLANKLEPLRPSRASTLYEMAALQYGRVDALKKCMELLFDFGENSEDCYRGLDILRSFVATMLSTTAVSVEVTDEDKVKFREYVLPACENVLLLEGDKGYVYRPLMDILNAYLICDPHNHHQKASLAMQQLLFLTQTNRAPLRALCDIAQAISCAESTSSGNENICRILQIEPERFSVENGKTRLRLLQLAMDKGDIHLRSRGLSKKILTKEAGYEDIRKSCVVSKQQKLAIEELGYVRAIYSLAVLLDVGTKGVEQNAPKAAELYGSLISNWDD 335
            +HFVE+PV+ ++ VSY++A+DA+LMHT LLVQDA+++     + +H  GT       +  DL+++L + LEP   SRA  LYE+AA+QYGRVDAL++ ++LLF   ++ +D  RGLDIL++F+ TMLS T+VSV ++ E++ K R +VLP CE +L + GD+  +YR L+D+++AYLIC+P NHH++A L +Q++LFL+ +  A +RALCDIA A SC ES   GNE IC ++ +EP+ FS E+G+ RL LL+LA+D G     SR LS +++ K+A YEDIR      K  +  I+++ +VRA+YSLAVLLDVGT GV+ +A +A E+Y SLI  W+D
Sbjct:  888 NHFVEIPVQDIKEVSYEEADDALLMHTCLLVQDALKHQPVLMNVSHDEGTGG-----NPADLLIKLGDTLEP---SRAVNLYEIAAVQYGRVDALQRSLQLLFTLDKSPDDYSRGLDILQTFLGTMLSYTSVSVHISPENETKLRNHVLPECERLLGMVGDRRDIYRSLVDLIHAYLICNPRNHHERAMLTLQKVLFLSHSKHASVRALCDIAHATSCIESAECGNETICSLVGLEPKHFSAEHGRFRLELLELAVDTGT--RLSRRLSNEVVKKQAVYEDIRNFATQHKLHQRGIKKMDHVRAMYSLAVLLDVGTGGVQPDARRAVEMYESLIEEWED 1216
The following BLAST results are available for this feature:
BLAST of Ggra5600.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IY165.190e-9348.97Cytochrome c oxidase assembly factor 7 n=1 Tax=Gra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 412..448
e-value: 0.12
score: 21.5
coord: 450..486
e-value: 29.0
score: 9.6
coord: 336..372
e-value: 0.062
score: 22.4
coord: 374..410
e-value: 4.8E-5
score: 32.8
coord: 298..334
e-value: 38.0
score: 8.6
coord: 487..523
e-value: 150.0
score: 3.3
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 413..442
e-value: 0.13
score: 13.0
coord: 337..369
e-value: 2.3E-4
score: 21.7
coord: 375..410
e-value: 5.3E-5
score: 23.8
coord: 489..518
e-value: 250.0
score: 2.6
coord: 300..326
e-value: 17.0
score: 6.3
coord: 451..479
e-value: 0.79
score: 10.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 242..563
e-value: 1.5E-42
score: 147.6
NoneNo IPR availablePANTHERPTHR43628ACTIVATOR OF C KINASE PROTEIN 1-RELATEDcoord: 411..557
coord: 294..449
NoneNo IPR availablePANTHERPTHR43628:SF9SEL1-REPEAT-CONTAINING PROTEIN YBEQcoord: 411..557
coord: 294..449
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 294..519

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1076897..1078603 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5600.t2Ggra5600.t2Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1076897..1078603 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5600.t2 ID=Ggra5600.t2|Name=Ggra5600.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=569bp
MSHFVELPVKRVQTVSYKKAEDAVLMHTSLLVQDAVRNHYNHSNGTSSLV
LEESAVDLMMRLANKLEPLRPSRASTLYEMAALQYGRVDALKKCMELLFD
FGENSEDCYRGLDILRSFVATMLSTTAVSVEVTDEDKVKFREYVLPACEN
VLLLEGDKGYVYRPLMDILNAYLICDPHNHHQKASLAMQQLLFLTQTNRA
PLRALCDIAQAISCAESTSSGNENICRILQIEPERFSVENGKTRLRLLQL
AMDKGDIHLRSRGLSKKILTKEAGYEDIRKSCVVSKQQKLAIEELGYVRA
IYSLAVLLDVGTKGVEQNAPKAAELYGSLISNWDDGYALFNLALLLENGG
KGLNRDVGKAIELYERAIAEEGNVEAMYSLALIRHYGADGFDPNLKEAIK
LYKQAINQGNHIEAMFNLATLFQAGGEGIHPDPKAAISLYERVISSKKHV
HAMYNLAALLQCDVNGLEPNPGRAVELYEVMVEDDDVNAMYALADLLLTE
RHEMVFDVAKAKQYVRKAMVCQSSVKIGAEHMRNVWNTLRVGSEHVEQDI
ELCAAIEMHAQQSEVVLH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf