Ggra5600.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5600.t1
Unique NameGgra5600.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length544
Homology
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BLAST of Ggra5600.t1 vs. uniprot
Match: A0A2V3IY16 (Cytochrome c oxidase assembly factor 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY16_9FLOR)

HSP 1 Score: 291 bits (746), Expect = 7.370e-83
Identity = 153/315 (48.57%), Postives = 221/315 (70.16%), Query Frame = 0 
Query:    1 MHTSLLVQDAVRN-----HYNHSNGTSSLVLEESAVDLMMRLANKLEPLRPSRASTLYEMAALQYGRVDALKKCMELLFDFGENSEDCYRGLDILRSFVATMLSTTAVSVEVTDEDKVKFREYVLPACENVLLLEGDKGYVYRPLMDILNAYLICDPHNHHQKASLAMQQLLFLTQTNRAPLRALCDIAQAISCAESTSSGNENICRILQIEPERFSVENGKTRLRLLQLAMDKGDIHLRSRGLSKKILTKEAGYEDIRKSCVVSKQQKLAIEELGYVRAIYSLAVLLDVGTKGVEQNAPKAAELYGSLISNWDD 310
            MHT LLVQDA+++     + +H  GT       +  DL+++L + LEP   SRA  LYE+AA+QYGRVDAL++ ++LLF   ++ +D  RGLDIL++F+ TMLS T+VSV ++ E++ K R +VLP CE +L + GD+  +YR L+D+++AYLIC+P NHH++A L +Q++LFL+ +  A +RALCDIA A SC ES   GNE IC ++ +EP+ FS E+G+ RL LL+LA+D G     SR LS +++ K+A YEDIR      K  +  I+++ +VRA+YSLAVLLDVGT GV+ +A +A E+Y SLI  W+D
Sbjct:  912 MHTCLLVQDALKHQPVLMNVSHDEGTGG-----NPADLLIKLGDTLEP---SRAVNLYEIAAVQYGRVDALQRSLQLLFTLDKSPDDYSRGLDILQTFLGTMLSYTSVSVHISPENETKLRNHVLPECERLLGMVGDRRDIYRSLVDLIHAYLICNPRNHHERAMLTLQKVLFLSHSKHASVRALCDIAHATSCIESAECGNETICSLVGLEPKHFSAEHGRFRLELLELAVDTGT--RLSRRLSNEVVKKQAVYEDIRNFATQHKLHQRGIKKMDHVRAMYSLAVLLDVGTGGVQPDARRAVEMYESLIEEWED 1216
The following BLAST results are available for this feature:
BLAST of Ggra5600.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IY167.370e-8348.57Cytochrome c oxidase assembly factor 7 n=1 Tax=Gra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 273..309
e-value: 38.0
score: 8.6
coord: 349..385
e-value: 4.8E-5
score: 32.8
coord: 462..498
e-value: 150.0
score: 3.3
coord: 387..423
e-value: 0.12
score: 21.5
coord: 425..461
e-value: 29.0
score: 9.6
coord: 311..347
e-value: 0.062
score: 22.4
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 464..493
e-value: 230.0
score: 2.7
coord: 388..417
e-value: 0.12
score: 13.1
coord: 275..301
e-value: 16.0
score: 6.4
coord: 312..344
e-value: 2.2E-4
score: 21.8
coord: 350..385
e-value: 5.0E-5
score: 23.9
coord: 426..454
e-value: 0.74
score: 10.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 217..538
e-value: 1.3E-42
score: 147.8
NoneNo IPR availablePANTHERPTHR43628ACTIVATOR OF C KINASE PROTEIN 1-RELATEDcoord: 269..423
NoneNo IPR availablePANTHERPTHR43628:SF9SEL1-REPEAT-CONTAINING PROTEIN YBEQcoord: 269..423
NoneNo IPR availablePANTHERPTHR43628:SF9SEL1-REPEAT-CONTAINING PROTEIN YBEQcoord: 386..532
NoneNo IPR availablePANTHERPTHR43628ACTIVATOR OF C KINASE PROTEIN 1-RELATEDcoord: 386..532
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 269..494

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1076897..1078528 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5600.t1Ggra5600.t1Gracilaria gracilis GNS1m malemRNAtig00000842_pilon 1076897..1078528 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5600.t1 ID=Ggra5600.t1|Name=Ggra5600.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MHTSLLVQDAVRNHYNHSNGTSSLVLEESAVDLMMRLANKLEPLRPSRAS
TLYEMAALQYGRVDALKKCMELLFDFGENSEDCYRGLDILRSFVATMLST
TAVSVEVTDEDKVKFREYVLPACENVLLLEGDKGYVYRPLMDILNAYLIC
DPHNHHQKASLAMQQLLFLTQTNRAPLRALCDIAQAISCAESTSSGNENI
CRILQIEPERFSVENGKTRLRLLQLAMDKGDIHLRSRGLSKKILTKEAGY
EDIRKSCVVSKQQKLAIEELGYVRAIYSLAVLLDVGTKGVEQNAPKAAEL
YGSLISNWDDGYALFNLALLLENGGKGLNRDVGKAIELYERAIAEEGNVE
AMYSLALIRHYGADGFDPNLKEAIKLYKQAINQGNHIEAMFNLATLFQAG
GEGIHPDPKAAISLYERVISSKKHVHAMYNLAALLQCDVNGLEPNPGRAV
ELYEVMVEDDDVNAMYALADLLLTERHEMVFDVAKAKQYVRKAMVCQSSV
KIGAEHMRNVWNTLRVGSEHVEQDIELCAAIEMHAQQSEVVLH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf