Ggra5637.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5637.t1
Unique Name	Ggra5637.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	574

Homology

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BLAST of Ggra5637.t1 vs. uniprot
Match: A0A2V3IL96 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL96_9FLOR)

HSP 1 Score: 207 bits (528), Expect = 1.280e-55
Identity = 250/493 (50.71%), Postives = 290/493 (58.82%), Query Frame = 0

Query:  107 LSPRVYALSPRLPSALPPSASPRVVEPVTPDRQPLPFSADDAAVLCERAPMGTVDERAAAFIFDNVPRRSLSRPVSTAPATDAPSHHADKF---SALRLHLPLDPSVTAPXXXXXXXXXXXXXXXXXXXXSALVLDTXXXXXXXXXXXSNPASNSAQNALSPFGLPTRPSAAALAAAAVDNSSFMPWGKDGDPAQPIASSAAMKIASNHP----------------------ATSSAFXXXXXXXXXXXXXXXXXXXXXXXXSTSANASMSLSDLPLLSSPNFARSICALTQMPDLLHAPPATSSISDLEPMQITRPRTAPQSNRQVMSDESPMKRSICISKRSIP--LGVSNTASAP-DPASDRLRCHMCGQRFARRSNLFKHLRSVHDDRRRFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCGAYFQDKEKMLKCLRCRQPS---NASTTATASPNGG 568
            LSPR +ALSPRLPSALPPSASPRVVEPVTPDRQPLPFS DD AVLC  AP+GTVDERAAA +FD  PRR  +R   +AP    P+HH D     +AL L LP+DP  ++                      +    + XXXXXX    + PA    Q  LSPFGL   P             S   WGKD  PA P+  S  M   S  P                      AT+   XXXXXXXX                +T+A +  ++ D+ LL SP  AR++                   +++EPM    PR AP      +S     ++ + I K +IP   GV+ ++ AP D  SD LRC+MCGQRFARRSNLFKHLRSVHDDRRRFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCGAYFQD+EKMLKCLRC++ +    A+T A AS   G
Sbjct:  183 LSPRPFALSPRLPSALPPSASPRVVEPVTPDRQPLPFSTDDPAVLCATAPLGTVDERAAAILFDTAPRRVHTR---SAPP---PAHHTDPDKIDAALSLQLPIDPVSSSQPLFRPSQASAPSLAWEPNPLISNSAASAXXXXXXAVSTTLPA----QKVLSPFGLAPAPPVV----------SPYHWGKD--PADPL--SLPMPSRSQQPRLSPLPVPAKPRHNNRTLVGAAATAXXXXXXXXXXXNATAPCFTSSPTSGLAATAAPSPQTMPDITLLPSPTVARTL-------------------TEIEPMSDVPPRPAP------ISRHDSHQKKVRIHKVAIPNPTGVATSSFAPPDTTSDPLRCNMCGQRFARRSNLFKHLRSVHDDRRRFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCGAYFQDREKMLKCLRCKERAIGLGAATAAAASIASG 626

The following BLAST results are available for this feature:

BLAST of Ggra5637.t1 vs. uniprot

BLAST of Ggra5637.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IL96	1.280e-55	50.71	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 473..496 e-value: 0.0025 score: 27.1 coord: 444..467 e-value: 8.6E-4 score: 28.6 coord: 502..525 e-value: 0.051 score: 22.7
IPR013087	Zinc finger C2H2-type	PFAM	PF00096	zf-C2H2	coord: 445..467 e-value: 4.3E-5 score: 23.7 coord: 473..496 e-value: 2.7E-4 score: 21.2
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 446..467
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 504..525
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 475..496
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 502..530 score: 10.574757
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 473..501 score: 11.447647
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 444..472 score: 12.79855
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 444..468 e-value: 2.7E-5 score: 26.0
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 477..553 e-value: 5.1E-9 score: 38.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..237
None	No IPR available	PANTHER	PTHR24388	ZINC FINGER PROTEIN	coord: 65..547
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 445..493
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 482..534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000842_pilon	contig	tig00000842_pilon:1216452..1218173 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5637.t1	Ggra5637.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000842_pilon 1216452..1218173 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5637.t1 ID=Ggra5637.t1|Name=Ggra5637.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=574bp
MSAAFASTSPSHPAAMLSIPLSSPPDPLAACDPLALLDDPFPYVGRSSTP
ALPRLSPPHLAVSLQLQSQSQSQPQSLPLPSSTATPPRHARPPLPSPLTA
ANTSAALSPRVYALSPRLPSALPPSASPRVVEPVTPDRQPLPFSADDAAV
LCERAPMGTVDERAAAFIFDNVPRRSLSRPVSTAPATDAPSHHADKFSAL
RLHLPLDPSVTAPPPPAPPVPSPPPASMPPSTSSALVLDTSSAAAAAAAA
ASNPASNSAQNALSPFGLPTRPSAAALAAAAVDNSSFMPWGKDGDPAQPI
ASSAAMKIASNHPATSSAFAAAAAVAAAAQVASSLSTTHRPPPSTSANAS
MSLSDLPLLSSPNFARSICALTQMPDLLHAPPATSSISDLEPMQITRPRT
APQSNRQVMSDESPMKRSICISKRSIPLGVSNTASAPDPASDRLRCHMCG
QRFARRSNLFKHLRSVHDDRRRFACRSCPYKFKRQDHLLKHMRSVHDRMR
NFVCDICGFGFAEKFNRDKHRRSIHMTRRAFQCPCGAYFQDKEKMLKCLR
CRQPSNASTTATASPNGGTSSTF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR036236	Znf_C2H2_sf