Ggra5595.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5595.t1
Unique NameGgra5595.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1064013..1064663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006813605.1
PFAMsF-box,F-box-like,WD40
Max annot lvl33208|Metazoa
KEGG koko:K10260
KEGG Pathwayko04120,map04120
KEGG ModuleM00387
Evalue0.000405
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota,39KI7@33154|Opisthokonta,3BMNV@33208|Metazoa,3D0GF@33213|Bilateria
DescriptionF-box-like
COG categoryS
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5595Ggra5595Gracilaria gracilis GNS1m malegenetig00000842_pilon 1064013..1064663 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5595.t1.start1Ggra5595.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1064013..1064015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5595.t1.CDS1Ggra5595.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1064013..1064663 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5595.t1.exon1Ggra5595.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1064013..1064663 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5595.t1.stop1Ggra5595.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1064661..1064663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5595.t1Ggra5595.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1064013..1064663 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5595.t1 ID=Ggra5595.t1|Name=Ggra5595.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MDLMDIDTERHCTIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAH
HHLWRQHCFKHSPSLRTERKAWPILACCEPVSPVPWRYVFRTLQNRPRWV
APLYKSGRFLCNTIVHLIKGSYVEIPGLLLVKRRFDIVHLPLFLGATCTY
FYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSV
NYSGERLIGALTAIGA*
back to top

spliced messenger RNA

>Ggra5595.t1 ID=Ggra5595.t1|Name=Ggra5595.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000842_pilon:1064013..1064663+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTCATGGACATTGACACCGAGCGCCATTGCACAATTGACAGCTT
ACCAGACGGTGTGATGCGTCAAATCTTCAAATATCTGACGCCAGAAGAGC
TCGAAATCAGTAGACAGGTGTGTACAAGATGGAACGAAAACGCCGCACAT
CACCATCTGTGGCGGCAGCACTGCTTCAAACACTCACCAAGTCTGCGCAC
GGAACGGAAAGCATGGCCCATTCTGGCATGTTGCGAACCAGTGAGCCCCG
TTCCGTGGCGATATGTGTTTCGCACGTTGCAAAACCGGCCGAGATGGGTT
GCTCCGTTGTATAAATCCGGGCGCTTCTTGTGCAACACCATCGTGCATCT
GATCAAGGGCTCCTACGTTGAGATCCCTGGCTTGCTGCTTGTGAAACGCC
GGTTCGACATTGTTCATCTCCCGTTGTTTCTTGGCGCCACTTGCACTTAT
TTTTACATGGAGCCGCTGCATGAGAGGGACAAGGCGCCGTACGAAGATTT
TGTGCAGTATCTGACGAACAGAAAAAGAGCTGGTTTGATATTTGTGCCCA
AGAAGAGACTAATGTTGATCCCACCGTGCGAGTATGTGAGGCAGAGTGTG
AACTACTCGGGCGAGCGTTTAATCGGGGCTCTTACGGCTATTGGCGCTTA
G
back to top

protein sequence of Ggra5595.t1

>Ggra5595.t1 ID=Ggra5595.t1|Name=Ggra5595.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MDLMDIDTERHCTIDSLPDGVMRQIFKYLTPEELEISRQVCTRWNENAAH
HHLWRQHCFKHSPSLRTERKAWPILACCEPVSPVPWRYVFRTLQNRPRWV
APLYKSGRFLCNTIVHLIKGSYVEIPGLLLVKRRFDIVHLPLFLGATCTY
FYMEPLHERDKAPYEDFVQYLTNRKRAGLIFVPKKRLMLIPPCEYVRQSV
NYSGERLIGALTAIGA*
back to top

mRNA from alignment at tig00000842_pilon:1064013..1064663+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5595.t1 ID=Ggra5595.t1|Name=Ggra5595.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000842_pilon:1064013..1064663+ (Gracilaria gracilis GNS1m male)
ATGGACCTCATGGACATTGACACCGAGCGCCATTGCACAATTGACAGCTT
ACCAGACGGTGTGATGCGTCAAATCTTCAAATATCTGACGCCAGAAGAGC
TCGAAATCAGTAGACAGGTGTGTACAAGATGGAACGAAAACGCCGCACAT
CACCATCTGTGGCGGCAGCACTGCTTCAAACACTCACCAAGTCTGCGCAC
GGAACGGAAAGCATGGCCCATTCTGGCATGTTGCGAACCAGTGAGCCCCG
TTCCGTGGCGATATGTGTTTCGCACGTTGCAAAACCGGCCGAGATGGGTT
GCTCCGTTGTATAAATCCGGGCGCTTCTTGTGCAACACCATCGTGCATCT
GATCAAGGGCTCCTACGTTGAGATCCCTGGCTTGCTGCTTGTGAAACGCC
GGTTCGACATTGTTCATCTCCCGTTGTTTCTTGGCGCCACTTGCACTTAT
TTTTACATGGAGCCGCTGCATGAGAGGGACAAGGCGCCGTACGAAGATTT
TGTGCAGTATCTGACGAACAGAAAAAGAGCTGGTTTGATATTTGTGCCCA
AGAAGAGACTAATGTTGATCCCACCGTGCGAGTATGTGAGGCAGAGTGTG
AACTACTCGGGCGAGCGTTTAATCGGGGCTCTTACGGCTATTGGCGCTTA
G
back to top

Coding sequence (CDS) from alignment at tig00000842_pilon:1064013..1064663+

>Ggra5595.t1 ID=Ggra5595.t1|Name=Ggra5595.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000842_pilon:1064013..1064663+ (Gracilaria gracilis GNS1m male)
ATGGACCTCATGGACATTGACACCGAGCGCCATTGCACAATTGACAGCTT
ACCAGACGGTGTGATGCGTCAAATCTTCAAATATCTGACGCCAGAAGAGC
TCGAAATCAGTAGACAGGTGTGTACAAGATGGAACGAAAACGCCGCACAT
CACCATCTGTGGCGGCAGCACTGCTTCAAACACTCACCAAGTCTGCGCAC
GGAACGGAAAGCATGGCCCATTCTGGCATGTTGCGAACCAGTGAGCCCCG
TTCCGTGGCGATATGTGTTTCGCACGTTGCAAAACCGGCCGAGATGGGTT
GCTCCGTTGTATAAATCCGGGCGCTTCTTGTGCAACACCATCGTGCATCT
GATCAAGGGCTCCTACGTTGAGATCCCTGGCTTGCTGCTTGTGAAACGCC
GGTTCGACATTGTTCATCTCCCGTTGTTTCTTGGCGCCACTTGCACTTAT
TTTTACATGGAGCCGCTGCATGAGAGGGACAAGGCGCCGTACGAAGATTT
TGTGCAGTATCTGACGAACAGAAAAAGAGCTGGTTTGATATTTGTGCCCA
AGAAGAGACTAATGTTGATCCCACCGTGCGAGTATGTGAGGCAGAGTGTG
AACTACTCGGGCGAGCGTTTAATCGGGGCTCTTACGGCTATTGGCGCTTA
G
back to top