Ggra10208.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10208.t1
Unique NameGgra10208.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Homology
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BLAST of Ggra10208.t1 vs. uniprot
Match: A0A2V3ILH2 (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILH2_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 5.700e-15
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 0 
Query:    1 MQPNLPLGDMHAPTTTTSEAPSDKP-FRCHYVDCLRPFQRKTSLTNHLKAHKNANSRSINRSRRAR 65
            M PN  +G    P+TT +EA +  P F+CHY DC+R F+RKTSLTNHLKAHKN NSRSINRS+RAR
Sbjct:    1 MHPNAHVGGFSTPSTTATEAHTGGPTFQCHYEDCMRIFRRKTSLTNHLKAHKNINSRSINRSKRAR 66
The following BLAST results are available for this feature:
BLAST of Ggra10208.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILH25.700e-1565.15C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 58..78
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 10..84
e-value: 3.2E-6
score: 28.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 28..50
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 26..55
score: 10.969637

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:90465..91346 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10208.t1Ggra10208.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 90465..91346 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10208.t1 ID=Ggra10208.t1|Name=Ggra10208.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MQPNLPLGDMHAPTTTTSEAPSDKPFRCHYVDCLRPFQRKTSLTNHLKAH
KNANSRSINRSRRARRRLEQRRREAAATELANGSLPLRHHVTDISSIAAA
VPRNVTNSDASTSHAEAEAQGASSLFHDELQPTWPFVAEASVTETLMPVP
LQLRNAEENGGGEGECGEPLVNSSQGMGLTGTSVGFEDSLAVRSWGDADV
FGGLLQSPILPVPFEAALHSEQDEFILQFPLGSVYGTANSAQGSDSLMGR
VRSGENGRSVHEQACEGANNEGGGGGEAADSLTPQFVFFNEAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type