Ggra10208.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10208.t1
Unique NameGgra10208.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:90465..91346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10208Ggra10208Gracilaria gracilis GNS1m malegenetig00000016_pilon 90465..91346 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10208.t1.stop1Ggra10208.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 90465..90467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10208.t1.CDS1Ggra10208.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 90465..91346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10208.t1.exon1Ggra10208.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 90465..91346 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10208.t1.start1Ggra10208.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 91344..91346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10208.t1Ggra10208.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 90465..91346 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10208.t1 ID=Ggra10208.t1|Name=Ggra10208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MQPNLPLGDMHAPTTTTSEAPSDKPFRCHYVDCLRPFQRKTSLTNHLKAH
KNANSRSINRSRRARRRLEQRRREAAATELANGSLPLRHHVTDISSIAAA
VPRNVTNSDASTSHAEAEAQGASSLFHDELQPTWPFVAEASVTETLMPVP
LQLRNAEENGGGEGECGEPLVNSSQGMGLTGTSVGFEDSLAVRSWGDADV
FGGLLQSPILPVPFEAALHSEQDEFILQFPLGSVYGTANSAQGSDSLMGR
VRSGENGRSVHEQACEGANNEGGGGGEAADSLTPQFVFFNEAE*
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spliced messenger RNA

>Ggra10208.t1 ID=Ggra10208.t1|Name=Ggra10208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000016_pilon:90465..91346- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCTAACCTCCCTCTCGGTGACATGCACGCGCCGACTACAACCAC
GTCCGAAGCACCCAGTGACAAGCCGTTCCGATGTCACTACGTGGACTGTC
TCCGGCCGTTTCAGAGGAAGACGTCCCTGACAAACCACCTCAAGGCGCAC
AAGAACGCCAACAGCAGATCTATCAACCGCAGCCGGCGTGCAAGAAGGAG
GTTAGAACAGAGGCGACGGGAGGCTGCAGCTACCGAACTGGCGAACGGGT
CCTTACCTCTTCGGCACCATGTGACGGACATTTCGTCGATTGCAGCAGCC
GTACCACGCAACGTGACCAACTCGGACGCGTCTACCAGTCACGCGGAGGC
CGAAGCTCAGGGAGCAAGCAGCCTTTTTCACGACGAGCTGCAACCAACAT
GGCCGTTTGTGGCGGAGGCCTCTGTGACAGAGACTCTGATGCCGGTGCCT
CTGCAGCTAAGAAACGCGGAAGAAAACGGAGGTGGGGAAGGGGAGTGCGG
CGAGCCGCTGGTGAACAGTTCGCAGGGGATGGGGCTGACTGGCACGAGCG
TGGGTTTTGAGGACTCGCTCGCGGTGAGAAGCTGGGGGGATGCGGATGTG
TTTGGCGGGCTGCTTCAGTCGCCGATTTTGCCTGTGCCGTTCGAGGCGGC
TCTGCACTCGGAGCAGGACGAATTTATTCTGCAGTTCCCGCTTGGAAGCG
TGTATGGGACGGCGAATAGCGCGCAGGGCAGTGACAGTTTGATGGGGCGG
GTACGGAGCGGTGAGAATGGGCGATCGGTGCACGAGCAGGCGTGCGAGGG
GGCTAACAACGAGGGCGGCGGCGGCGGCGAGGCGGCCGACTCGTTGACAC
CGCAGTTTGTGTTCTTCAACGAGGCAGAGTAG
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protein sequence of Ggra10208.t1

>Ggra10208.t1 ID=Ggra10208.t1|Name=Ggra10208.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MQPNLPLGDMHAPTTTTSEAPSDKPFRCHYVDCLRPFQRKTSLTNHLKAH
KNANSRSINRSRRARRRLEQRRREAAATELANGSLPLRHHVTDISSIAAA
VPRNVTNSDASTSHAEAEAQGASSLFHDELQPTWPFVAEASVTETLMPVP
LQLRNAEENGGGEGECGEPLVNSSQGMGLTGTSVGFEDSLAVRSWGDADV
FGGLLQSPILPVPFEAALHSEQDEFILQFPLGSVYGTANSAQGSDSLMGR
VRSGENGRSVHEQACEGANNEGGGGGEAADSLTPQFVFFNEAE*
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mRNA from alignment at tig00000016_pilon:90465..91346-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10208.t1 ID=Ggra10208.t1|Name=Ggra10208.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000016_pilon:90465..91346- (Gracilaria gracilis GNS1m male)
ATGCAGCCTAACCTCCCTCTCGGTGACATGCACGCGCCGACTACAACCAC
GTCCGAAGCACCCAGTGACAAGCCGTTCCGATGTCACTACGTGGACTGTC
TCCGGCCGTTTCAGAGGAAGACGTCCCTGACAAACCACCTCAAGGCGCAC
AAGAACGCCAACAGCAGATCTATCAACCGCAGCCGGCGTGCAAGAAGGAG
GTTAGAACAGAGGCGACGGGAGGCTGCAGCTACCGAACTGGCGAACGGGT
CCTTACCTCTTCGGCACCATGTGACGGACATTTCGTCGATTGCAGCAGCC
GTACCACGCAACGTGACCAACTCGGACGCGTCTACCAGTCACGCGGAGGC
CGAAGCTCAGGGAGCAAGCAGCCTTTTTCACGACGAGCTGCAACCAACAT
GGCCGTTTGTGGCGGAGGCCTCTGTGACAGAGACTCTGATGCCGGTGCCT
CTGCAGCTAAGAAACGCGGAAGAAAACGGAGGTGGGGAAGGGGAGTGCGG
CGAGCCGCTGGTGAACAGTTCGCAGGGGATGGGGCTGACTGGCACGAGCG
TGGGTTTTGAGGACTCGCTCGCGGTGAGAAGCTGGGGGGATGCGGATGTG
TTTGGCGGGCTGCTTCAGTCGCCGATTTTGCCTGTGCCGTTCGAGGCGGC
TCTGCACTCGGAGCAGGACGAATTTATTCTGCAGTTCCCGCTTGGAAGCG
TGTATGGGACGGCGAATAGCGCGCAGGGCAGTGACAGTTTGATGGGGCGG
GTACGGAGCGGTGAGAATGGGCGATCGGTGCACGAGCAGGCGTGCGAGGG
GGCTAACAACGAGGGCGGCGGCGGCGGCGAGGCGGCCGACTCGTTGACAC
CGCAGTTTGTGTTCTTCAACGAGGCAGAGTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:90465..91346-

>Ggra10208.t1 ID=Ggra10208.t1|Name=Ggra10208.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000016_pilon:90465..91346- (Gracilaria gracilis GNS1m male)
ATGCAGCCTAACCTCCCTCTCGGTGACATGCACGCGCCGACTACAACCAC
GTCCGAAGCACCCAGTGACAAGCCGTTCCGATGTCACTACGTGGACTGTC
TCCGGCCGTTTCAGAGGAAGACGTCCCTGACAAACCACCTCAAGGCGCAC
AAGAACGCCAACAGCAGATCTATCAACCGCAGCCGGCGTGCAAGAAGGAG
GTTAGAACAGAGGCGACGGGAGGCTGCAGCTACCGAACTGGCGAACGGGT
CCTTACCTCTTCGGCACCATGTGACGGACATTTCGTCGATTGCAGCAGCC
GTACCACGCAACGTGACCAACTCGGACGCGTCTACCAGTCACGCGGAGGC
CGAAGCTCAGGGAGCAAGCAGCCTTTTTCACGACGAGCTGCAACCAACAT
GGCCGTTTGTGGCGGAGGCCTCTGTGACAGAGACTCTGATGCCGGTGCCT
CTGCAGCTAAGAAACGCGGAAGAAAACGGAGGTGGGGAAGGGGAGTGCGG
CGAGCCGCTGGTGAACAGTTCGCAGGGGATGGGGCTGACTGGCACGAGCG
TGGGTTTTGAGGACTCGCTCGCGGTGAGAAGCTGGGGGGATGCGGATGTG
TTTGGCGGGCTGCTTCAGTCGCCGATTTTGCCTGTGCCGTTCGAGGCGGC
TCTGCACTCGGAGCAGGACGAATTTATTCTGCAGTTCCCGCTTGGAAGCG
TGTATGGGACGGCGAATAGCGCGCAGGGCAGTGACAGTTTGATGGGGCGG
GTACGGAGCGGTGAGAATGGGCGATCGGTGCACGAGCAGGCGTGCGAGGG
GGCTAACAACGAGGGCGGCGGCGGCGGCGAGGCGGCCGACTCGTTGACAC
CGCAGTTTGTGTTCTTCAACGAGGCAGAGTAG
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