Ggra10252.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10252.t1
Unique NameGgra10252.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:216429..218000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ29090
PFAMsAmino_oxidase
Max annot lvl35493|Streptophyta
KEGG rclassRC00053,RC00225
KEGG koko:K13366
KEGG ReactionR01914,R09076
KEGG Pathwayko00330,ko00410,ko01100,map00330,map00410,map01100
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006576,GO:0006595,GO:0006598,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009987,GO:0016491,GO:0016645,GO:0016647,GO:0034641,GO:0036094,GO:0042402,GO:0043167,GO:0043168,GO:0044106,GO:0044237,GO:0046592,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Evalue4.58e-38
EggNOG OGsCOG1231@1|root,KOG0029@2759|Eukaryota,37QM5@33090|Viridiplantae,3GBX6@35493|Streptophyta
EC1.5.3.14,1.5.3.16
DescriptionPolyamine oxidase
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10252Ggra10252Gracilaria gracilis GNS1m malegenetig00000016_pilon 216429..218000 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10252.t1.start1Ggra10252.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 216429..216431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10252.t1.CDS1Ggra10252.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 216429..218000 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10252.t1.exon1Ggra10252.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 216429..218000 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10252.t1.stop1Ggra10252.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 217998..218000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10252.t1Ggra10252.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 216429..218000 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10252.t1 ID=Ggra10252.t1|Name=Ggra10252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MLQLPPHAYQNSKNTLVLYTTILLAACVSNSYSLPIQTQSSLLEKLKESC
QIEPVIIVGAGIAGAKVALELSKRNIPFIIVEATDRVGGRIRSLTIEPAS
CSECSELRTGFEFELGANWMQGYREGVPFFDFVDQHVKLQGTPTDFDDSF
FVTNGTLVKDEIANPIWERAEDAMAKVYALKKYYREKGIERPSLNLASAL
LFAAGFETNDPMTTSAIRFEVDYEYAVPANDISIADLSPIFDPEAPESVE
FFVADPRGYKAAVDVALRQAGVSSVNSSNSMLLLNSPVRTIVHGKKRALV
ITRNGDEIFGSAVVSTLPSGVLQASMLQNPTDPNSVRFVPDLSRERKLAI
SKIDMADYLKIFVQFKRPLFSDEDPLFILPLQCSEGGFLNIHNLNKKEFF
PGSSAVVVTSTDAYSRDLLCADRQSVLRDVLEYVSMALGRTVDEDYVASF
IVPHFRRDEYFRGSYTVIPPSMTSEDIEELNKPSETLFFAGEAHNTEGLN
GYVHGAWDSGMVTAEAVAEFLGC*
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spliced messenger RNA

>Ggra10252.t1 ID=Ggra10252.t1|Name=Ggra10252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000016_pilon:216429..218000+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACAGCTACCTCCTCATGCATACCAGAATTCCAAGAATACTTTGGT
TTTGTATACAACAATCTTGTTGGCGGCTTGCGTATCGAATTCATACTCTC
TCCCAATACAAACTCAGTCTTCTCTGCTGGAAAAACTCAAAGAGTCATGT
CAGATAGAGCCTGTCATAATCGTTGGCGCGGGAATTGCGGGAGCAAAGGT
TGCCCTCGAACTCTCCAAACGCAATATCCCGTTCATCATTGTGGAAGCCA
CTGACAGAGTTGGTGGTCGCATAAGATCCCTTACAATCGAACCTGCTTCC
TGTTCTGAATGCTCAGAGCTTCGTACGGGGTTCGAGTTCGAACTAGGTGC
AAATTGGATGCAAGGCTATCGCGAAGGAGTTCCTTTCTTTGACTTTGTGG
ACCAACACGTTAAACTACAGGGCACCCCAACGGATTTTGATGACTCCTTC
TTCGTGACGAACGGAACACTTGTGAAGGATGAAATTGCAAATCCGATATG
GGAGCGCGCAGAAGACGCCATGGCGAAAGTGTACGCACTGAAGAAATATT
ATAGAGAGAAGGGCATTGAAAGGCCGTCACTTAATCTTGCTTCTGCGCTG
CTGTTCGCTGCTGGTTTCGAAACTAACGACCCAATGACCACATCAGCGAT
ACGATTTGAAGTCGACTATGAGTACGCAGTGCCTGCTAATGATATTTCTA
TCGCTGACCTAAGTCCTATTTTTGATCCAGAAGCACCGGAGTCGGTAGAG
TTCTTTGTGGCCGACCCACGAGGATACAAGGCTGCAGTAGATGTTGCTTT
ACGACAGGCTGGTGTATCTAGCGTAAACAGCTCTAACTCGATGCTCCTCC
TCAACTCTCCGGTTCGCACTATAGTCCATGGCAAGAAAAGAGCACTGGTC
ATTACGCGAAATGGCGATGAAATCTTTGGATCAGCCGTGGTATCGACCTT
GCCCTCGGGTGTGTTGCAAGCATCAATGCTCCAGAACCCAACAGATCCCA
ATAGCGTTCGGTTTGTACCAGATTTATCAAGAGAGCGAAAGCTGGCTATA
TCCAAGATTGATATGGCGGATTATCTGAAGATATTTGTGCAGTTCAAACG
TCCATTGTTCTCGGACGAGGACCCATTGTTCATATTACCTCTACAATGCT
CGGAAGGCGGATTTCTGAACATTCATAATCTGAACAAGAAAGAGTTTTTC
CCAGGTTCAAGTGCTGTCGTAGTTACGTCGACAGATGCGTATAGTAGAGA
TTTGCTATGTGCGGATCGCCAAAGCGTTCTCCGGGATGTTCTAGAATATG
TTTCGATGGCGCTTGGACGAACTGTGGACGAAGACTATGTGGCCTCTTTC
ATAGTACCTCATTTTCGTCGGGACGAGTACTTTAGGGGGTCGTACACTGT
CATTCCTCCTTCAATGACGAGCGAAGATATTGAGGAATTAAACAAACCAA
GTGAAACTCTTTTCTTCGCTGGGGAAGCACACAACACTGAGGGTCTCAAT
GGATATGTGCATGGGGCATGGGATTCTGGTATGGTGACTGCTGAGGCTGT
AGCTGAATTCTTGGGGTGTTAA
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protein sequence of Ggra10252.t1

>Ggra10252.t1 ID=Ggra10252.t1|Name=Ggra10252.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MLQLPPHAYQNSKNTLVLYTTILLAACVSNSYSLPIQTQSSLLEKLKESC
QIEPVIIVGAGIAGAKVALELSKRNIPFIIVEATDRVGGRIRSLTIEPAS
CSECSELRTGFEFELGANWMQGYREGVPFFDFVDQHVKLQGTPTDFDDSF
FVTNGTLVKDEIANPIWERAEDAMAKVYALKKYYREKGIERPSLNLASAL
LFAAGFETNDPMTTSAIRFEVDYEYAVPANDISIADLSPIFDPEAPESVE
FFVADPRGYKAAVDVALRQAGVSSVNSSNSMLLLNSPVRTIVHGKKRALV
ITRNGDEIFGSAVVSTLPSGVLQASMLQNPTDPNSVRFVPDLSRERKLAI
SKIDMADYLKIFVQFKRPLFSDEDPLFILPLQCSEGGFLNIHNLNKKEFF
PGSSAVVVTSTDAYSRDLLCADRQSVLRDVLEYVSMALGRTVDEDYVASF
IVPHFRRDEYFRGSYTVIPPSMTSEDIEELNKPSETLFFAGEAHNTEGLN
GYVHGAWDSGMVTAEAVAEFLGC*
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mRNA from alignment at tig00000016_pilon:216429..218000+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10252.t1 ID=Ggra10252.t1|Name=Ggra10252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000016_pilon:216429..218000+ (Gracilaria gracilis GNS1m male)
ATGCTACAGCTACCTCCTCATGCATACCAGAATTCCAAGAATACTTTGGT
TTTGTATACAACAATCTTGTTGGCGGCTTGCGTATCGAATTCATACTCTC
TCCCAATACAAACTCAGTCTTCTCTGCTGGAAAAACTCAAAGAGTCATGT
CAGATAGAGCCTGTCATAATCGTTGGCGCGGGAATTGCGGGAGCAAAGGT
TGCCCTCGAACTCTCCAAACGCAATATCCCGTTCATCATTGTGGAAGCCA
CTGACAGAGTTGGTGGTCGCATAAGATCCCTTACAATCGAACCTGCTTCC
TGTTCTGAATGCTCAGAGCTTCGTACGGGGTTCGAGTTCGAACTAGGTGC
AAATTGGATGCAAGGCTATCGCGAAGGAGTTCCTTTCTTTGACTTTGTGG
ACCAACACGTTAAACTACAGGGCACCCCAACGGATTTTGATGACTCCTTC
TTCGTGACGAACGGAACACTTGTGAAGGATGAAATTGCAAATCCGATATG
GGAGCGCGCAGAAGACGCCATGGCGAAAGTGTACGCACTGAAGAAATATT
ATAGAGAGAAGGGCATTGAAAGGCCGTCACTTAATCTTGCTTCTGCGCTG
CTGTTCGCTGCTGGTTTCGAAACTAACGACCCAATGACCACATCAGCGAT
ACGATTTGAAGTCGACTATGAGTACGCAGTGCCTGCTAATGATATTTCTA
TCGCTGACCTAAGTCCTATTTTTGATCCAGAAGCACCGGAGTCGGTAGAG
TTCTTTGTGGCCGACCCACGAGGATACAAGGCTGCAGTAGATGTTGCTTT
ACGACAGGCTGGTGTATCTAGCGTAAACAGCTCTAACTCGATGCTCCTCC
TCAACTCTCCGGTTCGCACTATAGTCCATGGCAAGAAAAGAGCACTGGTC
ATTACGCGAAATGGCGATGAAATCTTTGGATCAGCCGTGGTATCGACCTT
GCCCTCGGGTGTGTTGCAAGCATCAATGCTCCAGAACCCAACAGATCCCA
ATAGCGTTCGGTTTGTACCAGATTTATCAAGAGAGCGAAAGCTGGCTATA
TCCAAGATTGATATGGCGGATTATCTGAAGATATTTGTGCAGTTCAAACG
TCCATTGTTCTCGGACGAGGACCCATTGTTCATATTACCTCTACAATGCT
CGGAAGGCGGATTTCTGAACATTCATAATCTGAACAAGAAAGAGTTTTTC
CCAGGTTCAAGTGCTGTCGTAGTTACGTCGACAGATGCGTATAGTAGAGA
TTTGCTATGTGCGGATCGCCAAAGCGTTCTCCGGGATGTTCTAGAATATG
TTTCGATGGCGCTTGGACGAACTGTGGACGAAGACTATGTGGCCTCTTTC
ATAGTACCTCATTTTCGTCGGGACGAGTACTTTAGGGGGTCGTACACTGT
CATTCCTCCTTCAATGACGAGCGAAGATATTGAGGAATTAAACAAACCAA
GTGAAACTCTTTTCTTCGCTGGGGAAGCACACAACACTGAGGGTCTCAAT
GGATATGTGCATGGGGCATGGGATTCTGGTATGGTGACTGCTGAGGCTGT
AGCTGAATTCTTGGGGTGTTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:216429..218000+

>Ggra10252.t1 ID=Ggra10252.t1|Name=Ggra10252.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000016_pilon:216429..218000+ (Gracilaria gracilis GNS1m male)
ATGCTACAGCTACCTCCTCATGCATACCAGAATTCCAAGAATACTTTGGT
TTTGTATACAACAATCTTGTTGGCGGCTTGCGTATCGAATTCATACTCTC
TCCCAATACAAACTCAGTCTTCTCTGCTGGAAAAACTCAAAGAGTCATGT
CAGATAGAGCCTGTCATAATCGTTGGCGCGGGAATTGCGGGAGCAAAGGT
TGCCCTCGAACTCTCCAAACGCAATATCCCGTTCATCATTGTGGAAGCCA
CTGACAGAGTTGGTGGTCGCATAAGATCCCTTACAATCGAACCTGCTTCC
TGTTCTGAATGCTCAGAGCTTCGTACGGGGTTCGAGTTCGAACTAGGTGC
AAATTGGATGCAAGGCTATCGCGAAGGAGTTCCTTTCTTTGACTTTGTGG
ACCAACACGTTAAACTACAGGGCACCCCAACGGATTTTGATGACTCCTTC
TTCGTGACGAACGGAACACTTGTGAAGGATGAAATTGCAAATCCGATATG
GGAGCGCGCAGAAGACGCCATGGCGAAAGTGTACGCACTGAAGAAATATT
ATAGAGAGAAGGGCATTGAAAGGCCGTCACTTAATCTTGCTTCTGCGCTG
CTGTTCGCTGCTGGTTTCGAAACTAACGACCCAATGACCACATCAGCGAT
ACGATTTGAAGTCGACTATGAGTACGCAGTGCCTGCTAATGATATTTCTA
TCGCTGACCTAAGTCCTATTTTTGATCCAGAAGCACCGGAGTCGGTAGAG
TTCTTTGTGGCCGACCCACGAGGATACAAGGCTGCAGTAGATGTTGCTTT
ACGACAGGCTGGTGTATCTAGCGTAAACAGCTCTAACTCGATGCTCCTCC
TCAACTCTCCGGTTCGCACTATAGTCCATGGCAAGAAAAGAGCACTGGTC
ATTACGCGAAATGGCGATGAAATCTTTGGATCAGCCGTGGTATCGACCTT
GCCCTCGGGTGTGTTGCAAGCATCAATGCTCCAGAACCCAACAGATCCCA
ATAGCGTTCGGTTTGTACCAGATTTATCAAGAGAGCGAAAGCTGGCTATA
TCCAAGATTGATATGGCGGATTATCTGAAGATATTTGTGCAGTTCAAACG
TCCATTGTTCTCGGACGAGGACCCATTGTTCATATTACCTCTACAATGCT
CGGAAGGCGGATTTCTGAACATTCATAATCTGAACAAGAAAGAGTTTTTC
CCAGGTTCAAGTGCTGTCGTAGTTACGTCGACAGATGCGTATAGTAGAGA
TTTGCTATGTGCGGATCGCCAAAGCGTTCTCCGGGATGTTCTAGAATATG
TTTCGATGGCGCTTGGACGAACTGTGGACGAAGACTATGTGGCCTCTTTC
ATAGTACCTCATTTTCGTCGGGACGAGTACTTTAGGGGGTCGTACACTGT
CATTCCTCCTTCAATGACGAGCGAAGATATTGAGGAATTAAACAAACCAA
GTGAAACTCTTTTCTTCGCTGGGGAAGCACACAACACTGAGGGTCTCAAT
GGATATGTGCATGGGGCATGGGATTCTGGTATGGTGACTGCTGAGGCTGT
AGCTGAATTCTTGGGGTGTTAA
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