Ggra10262.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10262.t1
Unique NameGgra10262.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:279359..280497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10262Ggra10262Gracilaria gracilis GNS1m malegenetig00000016_pilon 279359..280497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10262.t1Ggra10262.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 279359..280497 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10262.t1.stop1Ggra10262.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 279359..279361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10262.t1.CDS1Ggra10262.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 279359..279425 -
Ggra10262.t1.CDS2Ggra10262.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 279488..280035 -
Ggra10262.t1.CDS3Ggra10262.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 280123..280497 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10262.t1.exon1Ggra10262.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 279359..279425 -
Ggra10262.t1.exon2Ggra10262.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 279488..280035 -
Ggra10262.t1.exon3Ggra10262.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 280123..280497 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10262.t1.intron1Ggra10262.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 279426..279487 -
Ggra10262.t1.intron2Ggra10262.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 280036..280122 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10262.t1.start1Ggra10262.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 280495..280497 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10262.t1 ID=Ggra10262.t1|Name=Ggra10262.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp
MPSHTRSHGNETAGEARKVPQTIVETLQAPRLIDIDRKDFVIFKHRRSEY
ERLVKEKNEQPGVNVIPTSLRSSCSDAVLQMMIILQLVPASNVEAITDDQ
LRACIETHTVVKPEDYNLAIIERELNVGCPNFVTDKERLAVQHVFKLVKE
ERLRTQIILIWRLKKEEGFRNDYGVFFRALVKKARTIDTQDAAVSLRDAE
ISSDPEEPKGRKRAPTRSGKLKSGYKRSEEDGPPSRRKRRSCLNPECEED
HLVKDCSRTSAEYRKKLLADSRAQRDRKRRFNDTKGGKGSVSSTNSSNEA
DNSALFSADPATGNRGDEEEWFNCEIGAT*
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spliced messenger RNA

>Ggra10262.t1 ID=Ggra10262.t1|Name=Ggra10262.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000016_pilon:279359..280497- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAGTCATACAAGAAGCCATGGCAATGAGACAGCGGGTGAAGCCCG
AAAGGTTCCGCAGACGATCGTGGAGACTTTGCAAGCACCCCGTCTTATTG
ACATTGATCGGAAGGACTTCGTTATTTTCAAACACAGACGCAGTGAGTAT
GAACGGTTAGTCAAGGAGAAGAACGAGCAACCCGGAGTGAATGTCATACC
CACCTCGTTGCGTAGCAGTTGTAGCGATGCTGTGCTGCAAATGATGATCA
TTCTGCAGCTGGTTCCCGCAAGCAATGTCGAAGCCATCACGGACGACCAG
CTAAGAGCATGCATTGAAACCCATACTGTGGTCAAGCCGGAAGATTACAA
CCTTGCGATAATTGAGCGTGAATTGAATGTTGGGTGTCCAAACTTTGTGA
CTGACAAAGAACGTCTGGCAGTGCAGCACGTATTCAAACTTGTCAAGGAG
GAACGTTTGCGAACACAGATAATTTTGATCTGGCGACTCAAAAAGGAGGA
AGGCTTTCGTAATGACTACGGAGTTTTCTTCCGAGCCCTTGTCAAAAAAG
CGCGAACAATAGACACGCAAGATGCGGCAGTCTCATTGCGCGATGCTGAG
ATCTCTTCGGACCCAGAAGAGCCTAAAGGGCGCAAGCGCGCCCCGACTAG
GTCTGGGAAACTGAAGAGTGGCTACAAGCGTTCCGAAGAAGATGGTCCTC
CCTCGAGGAGGAAGCGTAGGTCTTGCCTCAACCCCGAGTGTGAGGAGGAC
CACCTTGTGAAGGACTGCTCAAGGACGAGCGCGGAGTACCGTAAGAAGCT
CCTGGCCGACTCTCGCGCACAAAGGGATCGTAAACGTCGTTTCAACGATA
CAAAGGGTGGAAAGGGAAGCGTGTCTAGTACTAATTCTAGCAATGAAGCA
GACAACTCGGCACTTTTCTCTGCTGATCCCGCCACGGGTAATCGCGGAGA
TGAGGAAGAGTGGTTCAACTGTGAAATTGGAGCCACTTAG
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protein sequence of Ggra10262.t1

>Ggra10262.t1 ID=Ggra10262.t1|Name=Ggra10262.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
MPSHTRSHGNETAGEARKVPQTIVETLQAPRLIDIDRKDFVIFKHRRSEY
ERLVKEKNEQPGVNVIPTSLRSSCSDAVLQMMIILQLVPASNVEAITDDQ
LRACIETHTVVKPEDYNLAIIERELNVGCPNFVTDKERLAVQHVFKLVKE
ERLRTQIILIWRLKKEEGFRNDYGVFFRALVKKARTIDTQDAAVSLRDAE
ISSDPEEPKGRKRAPTRSGKLKSGYKRSEEDGPPSRRKRRSCLNPECEED
HLVKDCSRTSAEYRKKLLADSRAQRDRKRRFNDTKGGKGSVSSTNSSNEA
DNSALFSADPATGNRGDEEEWFNCEIGAT*
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mRNA from alignment at tig00000016_pilon:279359..280497-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10262.t1 ID=Ggra10262.t1|Name=Ggra10262.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1139bp|location=Sequence derived from alignment at tig00000016_pilon:279359..280497- (Gracilaria gracilis GNS1m male)
ATGCCAAGTCATACAAGAAGCCATGGCAATGAGACAGCGGGTGAAGCCCG
AAAGGTTCCGCAGACGATCGTGGAGACTTTGCAAGCACCCCGTCTTATTG
ACATTGATCGGAAGGACTTCGTTATTTTCAAACACAGACGCAGTGAGTAT
GAACGGTTAGTCAAGGAGAAGAACGAGCAACCCGGAGTGAATGTCATACC
CACCTCGTTGCGTAGCAGTTGTAGCGATGCTGTGCTGCAAATGATGATCA
TTCTGCAGCTGGTTCCCGCAAGCAATGTCGAAGCCATCACGGACGACCAG
CTAAGAGCATGCATTGAAACCCATACTGTGGTCAAGCCGGAAGATTACAA
CCTTGCGATAATTGAGCGTGAATTGGTTAATGTGTAGATACCTGACGGGG
ACGCTATGACTCTGGAGTACAAAGTGAGGCGCTTAGGAATTTTGTACCTT
AAGGCCTTACAGAATGTTGGGTGTCCAAACTTTGTGACTGACAAAGAACG
TCTGGCAGTGCAGCACGTATTCAAACTTGTCAAGGAGGAACGTTTGCGAA
CACAGATAATTTTGATCTGGCGACTCAAAAAGGAGGAAGGCTTTCGTAAT
GACTACGGAGTTTTCTTCCGAGCCCTTGTCAAAAAAGCGCGAACAATAGA
CACGCAAGATGCGGCAGTCTCATTGCGCGATGCTGAGATCTCTTCGGACC
CAGAAGAGCCTAAAGGGCGCAAGCGCGCCCCGACTAGGTCTGGGAAACTG
AAGAGTGGCTACAAGCGTTCCGAAGAAGATGGTCCTCCCTCGAGGAGGAA
GCGTAGGTCTTGCCTCAACCCCGAGTGTGAGGAGGACCACCTTGTGAAGG
ACTGCTCAAGGACGAGCGCGGAGTACCGTAAGAAGCTCCTGGCCGACTCT
CGCGCACAAAGGGATCGTAAACGTCGTTTCAACGATACAAAGGGTGGAAA
GGGAAGCGTGTCTAGTACTAATTCTAGCAATGAAGCAGACAACTCGGCAC
TTTTCTCTGCGTCATTTTTCAACGGCGCAGTGGAAACGTATGTTTTGGCT
GATCAGGGTTCCGACACCACAGTGATCCCGCCACGGGTAATCGCGGAGAT
GAGGAAGAGTGGTTCAACTGTGAAATTGGAGCCACTTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:279359..280497-

>Ggra10262.t1 ID=Ggra10262.t1|Name=Ggra10262.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000016_pilon:279359..280497- (Gracilaria gracilis GNS1m male)
ATGCCAAGTCATACAAGAAGCCATGGCAATGAGACAGCGGGTGAAGCCCG
AAAGGTTCCGCAGACGATCGTGGAGACTTTGCAAGCACCCCGTCTTATTG
ACATTGATCGGAAGGACTTCGTTATTTTCAAACACAGACGCAGTGAGTAT
GAACGGTTAGTCAAGGAGAAGAACGAGCAACCCGGAGTGAATGTCATACC
CACCTCGTTGCGTAGCAGTTGTAGCGATGCTGTGCTGCAAATGATGATCA
TTCTGCAGCTGGTTCCCGCAAGCAATGTCGAAGCCATCACGGACGACCAG
CTAAGAGCATGCATTGAAACCCATACTGTGGTCAAGCCGGAAGATTACAA
CCTTGCGATAATTGAGCGTGAATTGAATGTTGGGTGTCCAAACTTTGTGA
CTGACAAAGAACGTCTGGCAGTGCAGCACGTATTCAAACTTGTCAAGGAG
GAACGTTTGCGAACACAGATAATTTTGATCTGGCGACTCAAAAAGGAGGA
AGGCTTTCGTAATGACTACGGAGTTTTCTTCCGAGCCCTTGTCAAAAAAG
CGCGAACAATAGACACGCAAGATGCGGCAGTCTCATTGCGCGATGCTGAG
ATCTCTTCGGACCCAGAAGAGCCTAAAGGGCGCAAGCGCGCCCCGACTAG
GTCTGGGAAACTGAAGAGTGGCTACAAGCGTTCCGAAGAAGATGGTCCTC
CCTCGAGGAGGAAGCGTAGGTCTTGCCTCAACCCCGAGTGTGAGGAGGAC
CACCTTGTGAAGGACTGCTCAAGGACGAGCGCGGAGTACCGTAAGAAGCT
CCTGGCCGACTCTCGCGCACAAAGGGATCGTAAACGTCGTTTCAACGATA
CAAAGGGTGGAAAGGGAAGCGTGTCTAGTACTAATTCTAGCAATGAAGCA
GACAACTCGGCACTTTTCTCTGCTGATCCCGCCACGGGTAATCGCGGAGA
TGAGGAAGAGTGGTTCAACTGTGAAATTGGAGCCACTTAG
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