Ggra1178.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1178.t1
Unique NameGgra1178.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:92387..92746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31870.EFQ33058
Preferred nameMRP10
Max annot lvl4751|Fungi
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue2.17e-05
EggNOG OGs2E4V9@1|root,2SBQ7@2759|Eukaryota,3A5TR@33154|Opisthokonta,3P58I@4751|Fungi,3QYPT@4890|Ascomycota,21AU8@147550|Sordariomycetes,1F3GS@1028384|Glomerellales
DescriptionInvolved in mitochondrial genome encoded proteins translation
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1178Ggra1178Gracilaria gracilis GNS1m malegenetig00000237_pilon 92387..92746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1178.t1Ggra1178.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 92387..92746 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1178.t1.stop1Ggra1178.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 92387..92389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1178.t1.CDS1Ggra1178.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 92387..92461 -
Ggra1178.t1.CDS2Ggra1178.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000237_pilon 92573..92746 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1178.t1.exon1Ggra1178.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 92387..92461 -
Ggra1178.t1.exon2Ggra1178.t1.exon2Gracilaria gracilis GNS1m maleexontig00000237_pilon 92573..92746 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1178.t1.intron1Ggra1178.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000237_pilon 92462..92572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1178.t1.start1Ggra1178.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 92744..92746 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1178.t1 ID=Ggra1178.t1|Name=Ggra1178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MGKGVRLPKRSTIERLTRKGPECMLEMMSVLSCFKDSNFNEAKCASRMKA
LHECVSRQPEAKNKRKSTIFYHLKRLYYMQRR*
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spliced messenger RNA

>Ggra1178.t1 ID=Ggra1178.t1|Name=Ggra1178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000237_pilon:92387..92746- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAGGGAGTCAGATTACCGAAGCGCAGTACTATAGAGAGACTCAC
AAGAAAGGGTCCGGAATGCATGCTGGAAATGATGTCTGTTTTGTCATGCT
TCAAGGATTCCAACTTTAACGAGGCAAAATGCGCCAGCCGGATGAAAGCC
CTTCATGAATGCGTGTCACGACAGCCAGAAGCAAAGAATAAGCGCAAGAG
CACGATATTCTATCACCTGAAACGCCTCTACTACATGCAAAGAAGGTAG
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protein sequence of Ggra1178.t1

>Ggra1178.t1 ID=Ggra1178.t1|Name=Ggra1178.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MGKGVRLPKRSTIERLTRKGPECMLEMMSVLSCFKDSNFNEAKCASRMKA
LHECVSRQPEAKNKRKSTIFYHLKRLYYMQRR*
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mRNA from alignment at tig00000237_pilon:92387..92746-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1178.t1 ID=Ggra1178.t1|Name=Ggra1178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00000237_pilon:92387..92746- (Gracilaria gracilis GNS1m male)
ATGGGTAAGGGAGTCAGATTACCGAAGCGCAGTACTATAGAGAGACTCAC
AAGAAAGGGTCCGGAATGCATGCTGGAAATGATGTCTGTTTTGTCATGCT
TCAAGGATTCCAACTTTAACGAGGCAAAATGCGCCAGCCGGATGAAAGCC
CTTCATGAATGCGTGTCACGACAGGTAAGTGATGCAAGCGCGAACCTTGG
TTTTGATAATATGTTCTTGCGTGATGTTGAGAAAAGCTAGCGTCAGTGCA
ACTAACCGGCCAGCAATTGTGTATATGTACAACAGCCAGAAGCAAAGAAT
AAGCGCAAGAGCACGATATTCTATCACCTGAAACGCCTCTACTACATGCA
AAGAAGGTAG
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Coding sequence (CDS) from alignment at tig00000237_pilon:92387..92746-

>Ggra1178.t1 ID=Ggra1178.t1|Name=Ggra1178.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000237_pilon:92387..92746- (Gracilaria gracilis GNS1m male)
ATGGGTAAGGGAGTCAGATTACCGAAGCGCAGTACTATAGAGAGACTCAC
AAGAAAGGGTCCGGAATGCATGCTGGAAATGATGTCTGTTTTGTCATGCT
TCAAGGATTCCAACTTTAACGAGGCAAAATGCGCCAGCCGGATGAAAGCC
CTTCATGAATGCGTGTCACGACAGCCAGAAGCAAAGAATAAGCGCAAGAG
CACGATATTCTATCACCTGAAACGCCTCTACTACATGCAAAGAAGGTAG
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