Ggra1178.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1178.t1
Unique NameGgra1178.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Homology
BLAST of Ggra1178.t1 vs. uniprot
Match: A0A2V3J2X8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2X8_9FLOR)

HSP 1 Score: 133 bits (334), Expect = 5.040e-39
Identity = 63/81 (77.78%), Postives = 77/81 (95.06%), Query Frame = 0
Query:    3 KGVRLPKRSTIERLTRKGPECMLEMMSVLSCFKDSNFNEAKCASRMKALHECVSRQ-PEAKNKRKSTIFYHLKRLYYMQRR 82
            +G RLPKR TIERLT++GPEC++EMM++LSCFK+S+FNEAKCA +M+ALH+CVSR+ PEAKNKRKST+FYHLKRLYYMQRR
Sbjct:    6 RGPRLPKRRTIERLTKRGPECVMEMMALLSCFKESSFNEAKCAGQMRALHDCVSRKVPEAKNKRKSTVFYHLKRLYYMQRR 86          
BLAST of Ggra1178.t1 vs. uniprot
Match: R7QJK4 (CHCH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJK4_CHOCR)

HSP 1 Score: 129 bits (325), Expect = 1.120e-37
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    3 KGVRLPKRSTIERLTRKGPECMLEMMSVLSCFKDSNFNEAKCASRMKALHECVSRQPEAKNKRKSTIFYHLKRLYYMQRR 82
            +G +LPKRS IERLTRKGPEC+ EMM++LSCFKDSNFNEA+CA +M++L ECVSRQPEAK+K KST+FYHLKRLYYMQRR
Sbjct:    6 RGPKLPKRSAIERLTRKGPECLPEMMAMLSCFKDSNFNEARCAGQMRSLSECVSRQPEAKSK-KSTVFYHLKRLYYMQRR 84          
BLAST of Ggra1178.t1 vs. uniprot
Match: A0A5J4YLX5 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLX5_PORPP)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-14
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 0
Query:    1 MGK---GVRLPKRSTIERLTRKGPECMLEMMSVLSCFKDSNFNEAKCASRMKALHECVSRQPEAKNKRKSTIFYHLKRLYYMQR 81
            MGK   G  LPKR  IER+  +  EC   ++S+L CF+  NF+EAKC+ +M  L ECV RQ E  +K +ST+ YHL RL  + R
Sbjct:    1 MGKRPQGAGLPKRKVIERMVARQSECTPALISMLDCFRQHNFSEAKCSRQMALLSECVKRQ-EKTSKTRSTLMYHLIRLQNLMR 83          
The following BLAST results are available for this feature:
BLAST of Ggra1178.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J2X85.040e-3977.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QJK41.120e-3778.75CHCH domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A5J4YLX51.090e-1447.62Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 18..76
e-value: 1.7E-6
score: 29.9
NoneNo IPR availablePANTHERPTHR28066:SF137S RIBOSOMAL PROTEIN MRP10, MITOCHONDRIALcoord: 20..79
NoneNo IPR availablePROSITEPS51808CHCHcoord: 20..62
score: 11.903904
IPR017264Ribosomal protein MRP10, mitochondrialPANTHERPTHR2806637S RIBOSOMAL PROTEIN MRP10, MITOCHONDRIALcoord: 20..79
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 22..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:92387..92746 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1178.t1Ggra1178.t1Gracilaria gracilis GNS1m malemRNAtig00000237_pilon 92387..92746 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1178.t1 ID=Ggra1178.t1|Name=Ggra1178.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MGKGVRLPKRSTIERLTRKGPECMLEMMSVLSCFKDSNFNEAKCASRMKA
LHECVSRQPEAKNKRKSTIFYHLKRLYYMQRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017264Ribosomal_MRP10_mt
IPR009069Cys_alpha_HP_mot_SF