Ggra10229.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10229.t1
Unique NameGgra10229.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Homology
BLAST of Ggra10229.t1 vs. uniprot
Match: A0A2V3ILK0 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILK0_9FLOR)

HSP 1 Score: 456 bits (1173), Expect = 2.310e-160
Identity = 229/252 (90.87%), Postives = 240/252 (95.24%), Query Frame = 0
Query:   67 MSMLSRFGAVARRLAANPSSLHRTAPSVGLRALATT-PPTVANAGTLGAQTSSSELVAPRGPGALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            MSMLSRFGAVARRL+A  S L R APSVGLRALAT+ PPTVANAGTLGAQT+SSELVAPRGPGALP GYIDDYHNHPHR+MPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEV+L AIPLGESATIKWRGKPVFIRHRT+ EI+KAA DD+ ELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDY GWFCPCHGSHYD+SGRIRKGPAPLNLDVPTYRFEE+DTK+ILG
Sbjct:    1 MSMLSRFGAVARRLSATRSVLPRNAPSVGLRALATSSPPTVANAGTLGAQTASSELVAPRGPGALPTGYIDDYHNHPHRYMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVDLSAIPLGESATIKWRGKPVFIRHRTDEEIAKAAADDNIELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNLDVPTYRFEEEDTKLILG 252          
BLAST of Ggra10229.t1 vs. uniprot
Match: R7QDK5 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDK5_CHOCR)

HSP 1 Score: 431 bits (1109), Expect = 1.280e-150
Identity = 212/252 (84.13%), Postives = 233/252 (92.46%), Query Frame = 0
Query:   67 MSMLSRFGAVARRLAANPSSLH-RTAPSVGLRALATTPPTVANAGTLGAQTSSSELVAPRGPGALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            MS L+R+G  ARRLA++ SS + R+ PS GLRA+AT+PPTVANAGTLGA ++S+ELV+PRGPGALPVGYIDDYHNHPHR+MPGDPTKRAFTYMVLGTTKFIAASA RVL+LKLIYTMSASADVLA GSVEVELGAIPLGESATIKWRGKPVFIRHRT++EI  A +DDD  LRHPE D+ RVQKPEWLVV+GVCTHLGCVPIANAGDY GWFCPCHGSHYD+SGRIRKGPAPLNLDVPTYRFEE+DTKIILG
Sbjct:    1 MSFLTRWGGAARRLASHSSSFNARSLPSQGLRAVATSPPTVANAGTLGAASTSTELVSPRGPGALPVGYIDDYHNHPHRYMPGDPTKRAFTYMVLGTTKFIAASAARVLVLKLIYTMSASADVLAMGSVEVELGAIPLGESATIKWRGKPVFIRHRTDAEIELAKKDDDVVLRHPETDLSRVQKPEWLVVVGVCTHLGCVPIANAGDYHGWFCPCHGSHYDISGRIRKGPAPLNLDVPTYRFEEEDTKIILG 252          
BLAST of Ggra10229.t1 vs. uniprot
Match: A0A1X6NJZ3 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJZ3_PORUM)

HSP 1 Score: 313 bits (802), Expect = 1.000e-103
Identity = 155/204 (75.98%), Postives = 170/204 (83.33%), Query Frame = 0
Query:  118 SSELVAPRGPG----ALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            +SELV P  P      L  GY DDYHN  H    GDPTKRAFTY+VLG++KFIAASA RVLILKLIYTMSASADVLAKG+VEVEL +IPLGESATIKWRGKPVFIRHRT  EI+ AA+DD  ELR P+ D +R  KPEWLV+LGVCTHLGCVPIANAGDY GWFCPCHGSHYD+SGRIRKGPAPLNL+VP Y F EDDTK++LG
Sbjct:   61 ASELVRPMAPPDYATPLETGYKDDYHNSAHFNARGDPTKRAFTYLVLGSSKFIAASAARVLILKLIYTMSASADVLAKGAVEVELNSIPLGESATIKWRGKPVFIRHRTAEEIALAAKDDQAELRDPQLDSERSLKPEWLVLLGVCTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNLEVPIYSFMEDDTKLLLG 264          
BLAST of Ggra10229.t1 vs. uniprot
Match: M1VJ85 (Cytochrome c reductase Rieske iron-sulfur subunit n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VJ85_CYAM1)

HSP 1 Score: 285 bits (728), Expect = 9.410e-92
Identity = 144/213 (67.61%), Postives = 165/213 (77.46%), Query Frame = 0
Query:  116 TSSSELVAP-RGPGA----------LPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            +SSS+ VAP  G GA          LPVGY D+Y   PH    GDPT+RAFTYM+LG+ K +AASAVRVL+LK IYTMSASADVLA G+VEV+L A+PLG++ATIKWRGKPV IRHRT  EI  A  DD+  LR PE D  R   PEWLVV+GVCTHLGCVPIANAGD+ G+FCPCHGSHYD+SGR+RKGPAPLNL+VPTY F  DD KII+G
Sbjct:  109 SSSSDSVAPLAGDGAVASRAPQSTALPVGYADEYFREPHLLPRGDPTRRAFTYMMLGSAKLVAASAVRVLLLKFIYTMSASADVLALGTVEVDLSAVPLGQTATIKWRGKPVMIRHRTPEEIEAARRDDNAPLRDPETDASRAINPEWLVVVGVCTHLGCVPIANAGDWGGFFCPCHGSHYDVSGRVRKGPAPLNLEVPTYSFT-DDGKIIIG 320          
BLAST of Ggra10229.t1 vs. uniprot
Match: A0A5J4ZAV4 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZAV4_PORPP)

HSP 1 Score: 272 bits (696), Expect = 1.460e-87
Identity = 129/190 (67.89%), Postives = 156/190 (82.11%), Query Frame = 0
Query:  129 ALPVGYIDDYHNHPHRF-MPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            ALPV + D Y++ PH   + GDPTKRA+TY++LGTTKFIAAS +RVLIL  +YTMSA+ADVLA GS+EV+L  +P+G+SATIKWRGKPVFIRHRT+ EI  A +DDD  +R P  D  R   PEW V LGVCTHLGCVPIANAGDY+GWFCPCHGSHYDL+GRIRKGPAPLNL++P ++F E + K++LG
Sbjct:   86 ALPVAFEDSYYDKPHYHRLRGDPTKRAYTYLILGTTKFIAASTIRVLILNAVYTMSAAADVLAMGSLEVDLSNVPVGQSATIKWRGKPVFIRHRTQDEIEYARKDDDAPMRDPSPDALRCPDPEWAVFLGVCTHLGCVPIANAGDYKGWFCPCHGSHYDLTGRIRKGPAPLNLEIPPHQFLEGN-KLLLG 274          
BLAST of Ggra10229.t1 vs. uniprot
Match: M2XSR4 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSR4_GALSU)

HSP 1 Score: 259 bits (662), Expect = 2.160e-82
Identity = 117/189 (61.90%), Postives = 149/189 (78.84%), Query Frame = 0
Query:  129 ALPVGYIDDYHNHPHRFMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            A+P+GY D+Y +H HR+ PGDP+KR   Y+ LG  KFI A   RV+IL  IYTM  SADVLA+ S EV L ++P G + ++KWRGKPVFIRHR+E++I+KA +DD  +LR P+ D  RV+ P WLVV+G+CTHLGC+PIA+AGDY GWFCPCHGSHYD+SGRIRKGPAP NL++P Y+F ED  K+I+G
Sbjct:   89 AIPMGYADEYFHHVHRWRPGDPSKRTVVYLWLGICKFITACIARVVILCFIYTMMPSADVLAEASTEVSLDSVPEGSTVSVKWRGKPVFIRHRSEADIAKAKQDDHADLRDPQLDESRVEDPHWLVVIGICTHLGCIPIADAGDYGGWFCPCHGSHYDVSGRIRKGPAPSNLEIPPYKFTEDG-KMIIG 276          
BLAST of Ggra10229.t1 vs. uniprot
Match: A0A5J4XYX8 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XYX8_9CHLO)

HSP 1 Score: 251 bits (642), Expect = 1.540e-79
Identity = 125/209 (59.81%), Postives = 153/209 (73.21%), Query Frame = 0
Query:  117 SSSELVAPRGPGALPVGY-------IDDYHNHPH-RFMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            SS+  +AP   G  P  +       I DY  H H RF PGDP KRAFTY VL   +FI ASA+R+ +LK I +M+A+ DVLA  S+EV+L +I  G + T+KWRGKPVF++HRTE EI KA ++D  +LR P+AD DR QKPEWLVV+GVCTHLGCVP+ NAGD+ GWFCPCHGSHYDLSGR RKGPAP NL+VP Y F  DDT +++G
Sbjct:   57 SSNSALAPTTSGLPPTQHVMKNPTNIIDYDEHSHERFAPGDPGKRAFTYFVLTGGRFIYASAIRLGVLKFILSMTATKDVLAMASLEVDLSSIEPGNTITVKWRGKPVFVKHRTEEEIGKAKDEDISKLRDPQADDDRTQKPEWLVVVGVCTHLGCVPLPNAGDWGGWFCPCHGSHYDLSGRARKGPAPYNLEVPEYSFS-DDTTLVVG 264          
BLAST of Ggra10229.t1 vs. uniprot
Match: A0A7S0BTI9 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BTI9_9RHOD)

HSP 1 Score: 243 bits (619), Expect = 2.280e-77
Identity = 114/171 (66.67%), Postives = 134/171 (78.36%), Query Frame = 0
Query:  147 PGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            P D TKR   Y++LG  K I AS  R  +L ++Y +SASADVLA G+VEVEL  IP G +ATIKWRGKPVFIRHRT  +IS A  DD+ +LR PEAD+ RV+ P+W VVLGVCTHLGCVP+A+AGDY GWFCPCHGSHYD+SGRIRKGPAP NL+VP Y F ED  K++LG
Sbjct:    3 PRDKTKRTTAYLLLGAPKMILASMGRSAVLTVVYALSASADVLALGTVEVELAGIPEGSTATIKWRGKPVFIRHRTADQISAAGSDDESDLRDPEADLQRVKDPKWCVVLGVCTHLGCVPVADAGDYGGWFCPCHGSHYDVSGRIRKGPAPTNLEVPPYSFIEDGQKLLLG 173          
BLAST of Ggra10229.t1 vs. uniprot
Match: A0A7S3UF55 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UF55_9CHLO)

HSP 1 Score: 244 bits (624), Expect = 9.460e-77
Identity = 115/181 (63.54%), Postives = 144/181 (79.56%), Query Frame = 0
Query:  137 DYHNHPHRFMPGDPTKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            D  NH  RF PGDP+KRAFTY+VL   +FI AS +R+ +LK + +M+A+ DVLA  S+EV+L AI  G++ T+KWRGKPVFI+HRTE+E++ A   D   LR PE D  R Q PEWLVV+GVCTHLGCVPI+NAGDY GWFCPCHGSHYD+SGRIRKGPAPLNL+VP Y+F E++ K+++G
Sbjct:   91 DESNH-ERFTPGDPSKRAFTYVVLTGGRFIYASVIRLAVLKFVLSMTAAKDVLALASLEVDLSAIEKGQTITVKWRGKPVFIKHRTENEVTSAQSVDTSSLRDPEPDNVRAQNPEWLVVVGVCTHLGCVPISNAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNLEVPEYKFLEEE-KVVIG 269          
BLAST of Ggra10229.t1 vs. uniprot
Match: A0A7J7IIY9 (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIY9_9RHOD)

HSP 1 Score: 239 bits (609), Expect = 4.670e-76
Identity = 117/160 (73.12%), Postives = 134/160 (83.75%), Query Frame = 0
Query:  158 MVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGAIPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKPEWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNLDVPTYRFEEDDTKIILG 317
            M+LG+ K +AASAVRVLILK IYTMSASADVLA G+VEV L AIPLG++ATIKWRGKPV IRHRT  EI  A  DD+  LR PEAD  RV  PEWLVV+GVCTHLGCVPIA+AGD+ G+FCPCHGSHYD+SGR+RKGPAPLNL+VP Y F E+  K+I+G
Sbjct:    1 MMLGSAKLVAASAVRVLILKFIYTMSASADVLALGTVEVNLAAIPLGQTATIKWRGKPVMIRHRTPDEIEAARRDDNASLRDPEADSSRVVDPEWLVVIGVCTHLGCVPIAHAGDWGGFFCPCHGSHYDVSGRVRKGPAPLNLEVPKYTFTEEG-KLIIG 159          
The following BLAST results are available for this feature:
BLAST of Ggra10229.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILK02.310e-16090.87Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
R7QDK51.280e-15084.13Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A1X6NJZ31.000e-10375.98Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
M1VJ859.410e-9267.61Cytochrome c reductase Rieske iron-sulfur subunit ... [more]
A0A5J4ZAV41.460e-8767.89Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
M2XSR42.160e-8261.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A5J4XYX81.540e-7959.81Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A7S0BTI92.280e-7766.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A7S3UF559.460e-7763.54Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A7J7IIY94.670e-7673.13Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005805Rieske iron-sulphur protein, C-terminalPRINTSPR00162RIESKEcoord: 276..288
score: 71.73
coord: 254..265
score: 70.21
coord: 288..300
score: 72.69
IPR017941Rieske [2Fe-2S] iron-sulphur domainPFAMPF00355Rieskecoord: 244..301
e-value: 5.9E-11
score: 42.2
IPR017941Rieske [2Fe-2S] iron-sulphur domainPROSITEPS51296RIESKEcoord: 226..314
score: 19.276052
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitTIGRFAMTIGR01416TIGR01416coord: 152..316
e-value: 1.3E-52
score: 176.4
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyGENE3D2.102.10.10coord: 185..317
e-value: 6.8E-55
score: 186.8
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilySUPERFAMILY50022ISP domaincoord: 180..314
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainPFAMPF02921UCR_TMcoord: 149..187
e-value: 1.2E-8
score: 35.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..62
NoneNo IPR availablePANTHERPTHR10134:SF36CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIALcoord: 136..316
NoneNo IPR availableCDDcd03470Rieske_cytochrome_bc1coord: 193..317
e-value: 5.70858E-78
score: 232.065
NoneNo IPR availableSUPERFAMILY81502ISP transmembrane anchorcoord: 135..189
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
IPR014349Rieske iron-sulphur proteinPANTHERPTHR10134CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIALcoord: 136..316

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:160474..161427 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10229.t1Ggra10229.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 160474..161427 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10229.t1 ID=Ggra10229.t1|Name=Ggra10229.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MCGFSGPPIVLRCITVAARPPILPSAATSRYQPPPPHRPERYPRRDASRN
SPSRRSRTDRVTRTSKMSMLSRFGAVARRLAANPSSLHRTAPSVGLRALA
TTPPTVANAGTLGAQTSSSELVAPRGPGALPVGYIDDYHNHPHRFMPGDP
TKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGA
IPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKP
EWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNL
DVPTYRFEEDDTKIILG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005805Rieske_Fe-S_prot_C
IPR017941Rieske_2Fe-2S
IPR006317Ubiquinol_cyt_c_Rdtase_Fe-S-su
IPR036922Rieske_2Fe-2S_sf
IPR004192Rieske_TM
IPR014349Rieske_Fe-S_prot